Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C6orf106 Gene 0 43.10 62.42 45.26 45.56 80.06 79.67 52.27 58.94 50.43 84.50 227.96 128.36 113.30 209.60 190.26 177.73 169.46 61.89 75.68 44.85 115.37 159.26 140.19 2 374026 Transcript 0 3.04 8.22 8.06 2.01 12.01 23.40 10.38 8.21 10.27 7.23 17.21 12.98 16.72 18.31 2.23 6.84 12.48 9.64 13.32 1.41 13.84 8.70 11.27 3 374023 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 374021 Transcript 0 0.91 0.86 0.38 0.43 0.56 0.00 2.54 1.09 0.00 0.00 13.20 6.35 23.94 0.30 7.86 8.87 6.34 1.18 2.05 2.69 1.86 0.44 0.00 5 IG47_AR1 ActiveIntergenicRegion 0 18.21 0.36 15.39 6.53 38.22 20.58 8.11 5.89 4.49 4.55 10.91 32.93 6.07 5.15 15.35 14.16 11.34 1.94 10.23 2.59 10.24 4.62 6.11 6 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 ER1b ExonRegion 1 16.02 12.41 20.07 12.79 31.32 57.04 19.66 30.79 30.18 49.70 151.34 26.83 46.30 140.01 159.14 98.10 127.52 42.65 44.95 38.00 112.51 81.38 80.37 8 E1a_E3a KnownJunction 1 23.26 34.47 64.04 36.83 108.74 214.08 64.96 78.04 69.13 127.57 448.96 96.48 134.57 411.62 504.24 194.14 296.49 70.55 73.79 89.10 236.11 161.47 172.69 9 ER2a ExonRegion 0 1.82 1.71 0.77 0.87 1.13 0.00 5.08 2.19 0.00 0.00 8.66 12.70 13.14 0.59 15.73 17.73 7.91 2.37 4.11 5.38 3.72 0.88 0.00 10 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.74 0.00 34.74 0.00 0.00 0.00 4.77 0.00 0.00 0.00 0.00 0.00 0.00 11 ER3a ExonRegion 0 42.49 50.22 71.49 55.76 72.54 158.14 79.46 100.24 97.53 140.14 474.76 158.93 237.71 445.16 393.71 292.38 332.39 128.47 116.09 83.98 244.01 251.35 229.04 12 E3a_E4a KnownJunction 0 72.01 55.71 60.05 49.48 84.89 125.04 74.46 113.78 85.88 141.08 417.11 171.06 198.20 434.81 305.46 248.99 356.90 100.07 107.67 67.82 243.59 208.93 256.00 13 E3a_E5a KnownJunction 0 6.08 16.44 16.11 4.03 24.02 46.79 20.76 16.43 20.54 14.45 34.43 25.96 33.44 36.61 4.45 13.67 24.96 19.28 26.64 2.81 27.68 17.39 22.54 14 I3 Intron 0 9.42 5.65 3.47 5.66 9.96 3.71 13.00 7.62 4.82 4.61 3.26 16.11 24.25 1.41 10.22 11.70 11.11 3.57 3.98 5.80 4.09 1.63 4.63 15 I3_AR1 ActiveIntronRegion 0 12.17 2.03 2.45 5.11 22.74 5.04 9.60 2.16 4.32 2.29 5.07 0.00 14.07 1.62 3.99 2.97 7.01 1.85 0.00 6.38 0.00 0.00 7.71 16 I3_AR3 ActiveIntronRegion 0 9.39 19.65 3.10 3.91 9.74 1.17 9.12 6.07 4.33 4.70 3.66 8.26 17.36 0.70 11.32 6.79 4.48 3.00 3.32 5.27 1.31 0.82 2.70 17 I3_SR2 SilentIntronRegion 0 9.17 5.73 4.95 6.55 10.32 4.68 12.11 6.49 4.56 5.80 2.34 14.12 25.76 1.41 10.97 14.70 12.09 3.20 5.78 7.88 4.57 2.00 3.38 18 I3_AR4 ActiveIntronRegion 1 5.27 2.64 2.36 3.86 12.53 4.32 14.07 8.33 3.83 2.83 2.66 35.70 27.80 1.98 5.76 5.86 7.80 0.27 3.76 3.73 0.97 2.78 3.87 19 I3_SR3 SilentIntronRegion 0 11.78 4.57 3.73 6.66 9.69 4.12 15.34 10.01 5.87 5.53 4.68 20.06 29.47 1.55 12.23 15.38 14.52 5.61 3.65 5.50 5.99 1.78 6.47 20 ER4a ExonRegion 0 52.98 44.63 76.67 72.91 86.45 96.30 60.79 114.53 96.10 157.27 469.57 247.81 336.76 462.04 413.69 366.01 409.89 138.65 168.50 97.67 273.38 292.47 303.02 21 E4a_E5a KnownJunction 0 20.23 37.16 61.80 64.86 59.85 124.87 60.81 100.38 94.44 160.34 503.34 300.85 325.14 425.92 324.74 283.69 431.70 143.47 112.85 122.27 326.80 288.65 265.22 22 I4_AR1 ActiveIntronRegion 0 21.52 5.60 1.73 3.82 2.81 0.00 12.52 2.67 1.91 1.55 2.56 10.40 18.46 2.26 14.36 12.08 13.03 6.65 4.88 9.23 2.12 1.43 6.98 23 I4_SR1 SilentIntronRegion 0 12.22 3.59 2.88 4.89 5.75 1.91 10.41 7.85 5.06 5.51 1.73 22.19 33.41 2.47 13.92 14.57 12.33 3.30 4.60 6.17 1.82 1.23 5.00 24 I4_AR3 ActiveIntronRegion 0 41.89 1.32 5.99 1.21 0.00 0.00 4.79 6.50 1.08 3.28 2.27 17.87 26.43 1.68 11.56 14.86 11.63 0.00 8.65 3.04 6.23 2.35 3.73 25 I4_SR2 SilentIntronRegion 1 6.53 5.16 6.27 6.45 7.80 2.67 15.00 8.49 5.47 7.28 2.23 20.69 39.76 1.35 10.20 16.53 15.52 3.64 4.11 8.08 4.62 1.45 6.99 26 I4_SR3 SilentIntronRegion 0 10.51 5.15 3.42 4.79 8.46 2.24 8.90 5.56 3.85 4.13 1.92 13.52 21.84 1.22 8.27 9.20 9.18 1.40 2.04 3.83 1.42 1.26 4.27 27 I4_AR5 ActiveIntronRegion 0 23.62 5.99 3.21 6.97 15.44 1.94 11.10 2.57 3.43 1.50 3.64 8.18 10.20 1.35 6.72 13.55 9.69 4.23 5.85 2.08 3.65 1.25 6.32 28 ER5a ExonRegion 0 58.03 73.34 81.07 92.45 139.85 157.04 98.79 123.29 122.54 186.61 476.95 314.75 387.91 472.14 387.35 403.27 402.69 146.99 169.19 104.94 282.09 281.76 342.96 29 E5_Da NovelBoundary 0 23.41 6.71 23.95 6.03 21.22 4.66 34.76 20.25 18.37 10.21 23.53 18.76 12.82 12.13 13.35 27.69 8.98 10.07 0.00 2.56 23.04 5.20 19.55 30 E5a_E6a KnownJunction 0 57.27 101.89 65.05 63.50 95.50 115.27 94.24 90.08 93.86 156.93 502.65 324.71 290.89 474.37 329.93 259.42 388.97 95.96 133.56 97.22 198.98 232.20 300.73 31 I5_SR1 SilentIntronRegion 0 21.06 8.32 11.11 15.13 17.65 4.38 23.94 11.28 9.21 11.17 10.88 17.91 35.87 7.21 15.56 12.68 15.20 6.44 5.07 7.50 7.52 5.21 10.18 32 I5_AR5 ActiveIntronRegion 0 12.70 5.08 1.43 9.54 12.93 0.00 13.46 4.03 0.21 4.21 8.38 11.55 4.69 2.71 18.86 8.92 7.15 3.39 3.19 3.90 13.22 2.78 1.96 33 I5_SR6 SilentIntronRegion 0 6.53 9.46 1.62 8.67 11.44 7.68 19.88 5.75 1.10 2.31 6.14 10.77 9.03 6.88 7.83 3.01 7.22 9.12 3.38 7.50 8.84 1.82 8.08 34 I5_AR6 ActiveIntronRegion 0 8.72 7.92 5.24 9.96 11.19 10.19 16.56 3.43 3.72 4.43 4.40 11.31 16.46 2.19 5.28 5.51 7.10 1.88 4.60 5.07 2.54 1.82 6.85 35 ER6a ExonRegion 0 56.57 105.53 77.78 78.68 141.76 142.84 88.42 97.98 99.28 154.79 441.08 374.31 333.25 504.52 389.27 448.37 339.88 159.39 168.69 88.25 248.23 247.78 318.94 36 E6_Da KnownBoundary 0 137.73 200.75 123.56 159.59 239.56 154.34 133.77 121.41 110.70 172.05 561.46 411.28 239.27 515.16 420.18 574.72 475.55 234.29 257.42 113.01 331.99 415.35 384.48 37 ER6b ExonRegion 0 45.60 70.44 42.24 43.29 81.13 70.79 50.39 51.30 40.75 72.09 186.78 109.77 70.01 163.15 150.84 145.04 128.61 46.82 62.03 34.47 82.57 147.09 112.05 38 IG46_AR1 ActiveIntergenicRegion 0 4.23 0.00 0.00 2.73 0.00 0.00 2.27 3.46 2.47 2.29 0.00 0.00 0.00 1.62 2.90 0.00 0.00 6.60 2.28 6.38 7.24 2.68 14.68