Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C6orf1 Gene 0 32.20 15.31 50.60 33.31 25.59 84.17 13.03 55.62 76.22 56.18 25.70 8.38 13.45 35.88 65.56 43.65 29.76 57.28 34.55 28.91 67.90 79.65 78.88 2 476320 Transcript 0 2.00 0.72 1.45 1.74 4.20 4.96 0.82 2.13 2.91 2.01 0.03 0.29 2.13 2.72 1.55 0.69 0.35 6.76 1.26 1.60 4.82 2.56 4.80 3 335352 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 495581 Transcript 0 7.94 4.22 12.45 10.06 8.35 25.62 5.19 13.28 19.63 15.77 3.53 1.76 4.09 8.47 11.34 9.92 4.40 19.12 4.75 5.72 12.42 12.55 14.48 5 394990 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 413013 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 468145 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 481533 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 463083 Transcript 0 2.33 2.54 8.63 5.77 9.93 17.82 4.12 14.32 18.45 8.21 2.62 0.45 1.16 3.34 10.46 12.04 1.96 13.41 3.78 6.13 2.72 4.90 9.08 10 ER1a ExonRegion 0 2.59 0.89 2.65 1.12 1.26 6.38 0.68 2.76 5.40 2.72 0.06 0.00 1.76 1.43 1.16 0.99 0.69 11.93 2.09 2.64 9.21 3.59 9.21 11 E1_Ab KnownBoundary 0 17.26 6.38 2.93 0.00 0.00 12.38 0.00 2.34 4.25 2.95 0.00 0.00 0.00 0.00 0.00 4.02 0.00 7.30 0.00 0.00 15.20 16.59 7.68 12 E1_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.36 0.00 0.00 0.00 0.00 0.00 13 E1_Ad KnownBoundary 0 22.00 6.45 0.00 0.00 12.48 65.98 4.33 0.00 8.91 4.97 7.69 0.00 0.00 2.47 22.25 16.92 8.79 8.62 8.75 0.00 18.29 5.76 46.86 14 ER1b ExonRegion 0 35.98 10.17 11.03 4.09 13.38 56.85 3.97 8.64 19.76 9.18 5.80 0.00 0.00 6.50 23.21 17.83 6.60 24.02 6.37 4.26 28.65 18.75 58.73 15 ER1c ExonRegion 0 34.17 11.62 13.13 4.09 15.48 67.72 7.57 7.16 21.35 9.91 7.73 0.00 0.00 12.76 29.01 17.83 6.60 25.08 9.56 12.77 35.89 18.01 54.96 16 E1_Ae KnownBoundary 0 71.12 16.12 29.95 13.19 16.55 93.18 36.92 8.05 25.64 9.35 8.00 0.00 0.00 21.31 56.12 7.69 12.81 32.33 14.02 26.01 35.40 14.33 63.85 17 ER1d ExonRegion 0 73.34 22.27 15.01 6.27 24.62 123.69 27.67 6.05 22.54 13.59 13.53 0.00 0.00 31.10 66.44 26.45 18.15 23.84 16.09 24.26 45.51 29.79 82.52 18 E1_Af KnownBoundary 0 229.23 51.11 40.98 14.18 57.05 297.56 40.67 12.08 20.63 36.21 34.75 0.00 0.00 41.44 57.85 67.93 54.70 37.52 38.40 72.23 119.54 137.04 155.19 19 ER1e ExonRegion 0 200.52 67.96 16.76 9.67 51.44 311.57 64.70 3.18 27.09 26.08 24.44 0.00 0.00 71.09 143.66 52.06 60.80 23.96 31.75 34.45 141.25 139.13 133.38 20 E1_Ag KnownBoundary 0 0.00 0.00 6.92 1.90 0.00 0.00 0.00 0.00 1.74 1.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 E1_Da KnownBoundary 0 3.78 3.22 7.98 1.50 4.07 39.41 0.00 1.97 4.40 6.53 2.68 0.00 0.00 4.59 13.35 3.42 0.00 3.40 15.81 3.07 16.80 7.96 23.56 22 E1a_E2a KnownJunction 0 159.44 58.15 36.96 22.08 50.76 241.57 46.59 18.48 59.26 56.89 13.90 0.00 0.00 10.77 47.72 31.10 48.15 6.84 16.00 0.00 125.84 124.37 44.82 23 ER1f ExonRegion 0 198.42 65.07 18.07 10.22 52.85 322.29 55.61 4.75 26.55 24.08 23.19 0.00 0.00 60.09 123.30 54.98 59.42 19.40 33.45 21.28 147.10 155.22 122.60 24 ER1g ExonRegion 0 198.60 65.07 19.81 12.04 56.19 332.53 57.37 4.32 25.73 24.85 26.74 0.00 0.00 47.37 111.21 57.96 59.42 21.87 38.22 23.76 154.26 156.26 127.74 25 ER1h ExonRegion 0 5.79 2.19 29.49 11.58 8.74 20.98 2.00 17.13 23.63 21.18 9.76 0.72 0.00 9.13 25.54 26.29 13.01 29.26 18.78 16.91 32.69 22.06 56.31 26 E1_Db NovelBoundary 0 0.00 0.00 13.13 6.53 3.99 12.72 3.97 11.25 26.62 8.86 5.00 5.70 5.84 9.30 15.20 7.60 4.58 16.95 0.00 9.01 31.51 3.12 0.00 27 E1b_E2a KnownJunction 0 10.00 5.13 19.40 14.72 6.79 17.32 2.12 24.44 19.59 13.24 5.32 0.00 0.00 9.65 0.00 16.49 8.32 35.28 12.80 6.07 8.53 13.53 41.74 28 I1 Intron 0 5.89 3.13 14.15 10.58 7.44 24.95 4.93 18.59 19.17 13.65 4.80 2.50 2.11 4.71 5.37 4.75 3.32 19.94 6.78 8.18 12.12 12.94 14.42 29 I1_AR1 ActiveIntronRegion 0 5.61 2.79 17.39 8.81 10.12 33.68 6.64 19.48 28.55 15.97 3.09 1.06 2.50 4.76 4.25 8.25 4.23 20.04 4.83 9.62 19.39 16.01 24.16 30 I1_AR2 ActiveIntronRegion 0 3.92 4.20 14.46 15.22 9.19 18.52 3.13 17.23 13.94 10.74 4.70 0.00 2.81 8.01 7.01 3.91 2.75 26.36 8.44 8.26 11.20 8.79 9.74 31 I1_SR1 SilentIntronRegion 0 6.34 3.22 12.03 11.21 5.50 20.17 4.05 18.32 13.71 12.57 6.01 3.80 1.74 4.28 5.95 2.54 2.82 19.20 7.92 7.27 7.47 11.52 8.63 32 E2_Aa NovelBoundary 0 3.63 0.00 17.30 14.38 7.81 30.15 4.33 14.01 23.70 7.23 5.00 6.30 0.00 2.12 0.00 7.95 3.74 20.69 0.00 8.50 0.00 0.00 4.35 33 ER2a ExonRegion 0 55.80 26.72 74.36 35.15 41.65 140.21 27.74 65.04 80.91 59.15 29.87 11.07 12.37 40.16 53.21 35.33 52.65 56.85 21.89 36.05 117.26 74.52 67.16 34 E2_Da KnownBoundary 0 61.57 34.14 97.34 74.98 43.55 163.09 22.08 124.95 168.08 139.63 91.50 7.65 6.82 76.81 124.11 78.44 104.91 121.75 35.01 74.53 241.49 103.30 106.36 35 E2a_E2b KnownJunction 0 3.41 5.72 13.99 3.80 4.07 0.00 0.00 15.57 28.96 10.13 0.00 0.00 0.00 8.42 14.22 7.69 4.21 3.56 8.56 5.43 13.41 7.47 10.16 36 ER2b ExonRegion 0 28.96 31.79 120.56 92.34 44.82 126.81 17.74 122.00 184.34 149.98 67.33 16.60 14.70 112.36 187.37 107.54 74.60 114.22 52.13 79.89 179.09 205.92 201.11 37 E2_Db KnownBoundary 0 3.78 6.71 13.07 9.26 12.22 8.06 1.99 24.44 25.87 15.23 0.00 0.00 0.00 2.12 6.30 7.60 0.00 21.39 0.00 3.07 10.81 8.63 19.55 38 E2b_E2b KnownJunction 0 12.82 12.04 124.63 88.70 29.03 111.75 16.83 112.01 170.66 122.30 31.74 0.00 14.77 67.16 216.95 99.97 48.99 71.22 57.60 37.52 85.19 270.35 211.79 39 E2b_E2c KnownJunction 0 0.00 3.16 10.41 17.65 0.00 0.00 4.02 12.28 8.28 31.40 2.21 0.00 0.00 4.77 13.85 18.88 0.00 4.73 0.00 11.63 8.03 17.39 4.35 40 ER2c ExonRegion 0 7.94 4.22 12.45 10.06 8.35 25.62 5.19 13.28 19.63 15.77 3.53 1.76 4.09 8.47 11.34 9.92 4.40 19.12 4.75 5.72 12.42 12.55 14.48 41 E2_Ab KnownBoundary 0 15.56 11.91 19.25 12.02 10.78 30.78 8.13 24.89 30.61 25.76 6.63 6.30 6.01 25.19 18.05 4.19 12.53 29.18 0.00 0.00 7.41 8.14 33.72 42 ER2d ExonRegion 0 36.83 21.88 139.30 94.37 57.80 160.79 27.38 160.68 212.54 156.44 76.47 11.08 15.76 99.66 224.44 144.56 63.64 109.09 86.39 64.68 139.01 258.77 284.74 43 ER2e ExonRegion 0 18.76 3.93 8.94 9.69 12.29 28.99 5.89 18.53 15.21 13.37 4.19 5.43 4.45 7.84 15.76 15.17 4.03 16.90 8.03 8.05 7.01 13.99 16.20 44 E2_Ac KnownBoundary 0 3.56 5.85 12.71 10.26 10.87 37.99 0.00 24.15 9.58 32.80 0.00 0.00 0.00 0.00 25.09 11.45 10.57 22.59 13.46 12.02 5.99 10.72 12.55 45 ER2f ExonRegion 0 34.11 27.15 140.68 115.98 108.33 357.07 39.35 203.25 258.26 200.37 96.39 40.12 60.21 120.28 205.93 164.63 81.52 199.77 123.53 94.55 205.57 264.79 287.96 46 E2_Dd KnownBoundary 0 7.56 5.26 3.10 5.49 4.33 22.54 0.00 2.18 10.97 4.65 2.11 0.00 0.00 0.00 0.00 0.00 0.00 10.94 0.00 8.76 0.00 0.00 4.35 47 E2d_E2d KnownJunction 0 37.71 35.65 228.17 148.93 67.74 423.56 77.24 273.39 345.45 243.56 92.02 101.88 75.00 157.93 270.10 145.26 156.05 292.83 161.04 89.55 220.05 311.25 350.24 48 E2_De KnownBoundary 0 3.26 2.70 3.25 3.86 8.66 16.98 0.00 9.49 6.08 5.00 2.68 0.00 8.12 2.35 9.64 0.00 0.00 9.53 0.00 3.00 0.00 5.27 3.93 49 ER2g ExonRegion 0 4.69 5.81 5.34 6.43 5.92 26.33 0.00 7.41 12.26 7.21 3.45 0.00 4.69 1.39 7.05 0.85 0.00 14.65 1.37 7.90 0.94 4.46 6.50 50 ER2h ExonRegion 0 2.33 2.54 8.63 5.77 9.93 17.82 4.12 14.32 18.45 8.21 2.62 0.45 1.16 3.34 10.46 12.04 1.96 13.41 3.78 6.13 2.72 4.90 9.08 51 E2_Ad KnownBoundary 0 0.00 0.00 9.28 4.79 4.33 12.89 0.00 13.43 25.87 3.49 0.00 0.00 6.01 0.00 10.75 0.00 0.00 8.08 0.00 3.20 0.00 0.00 3.59 52 ER2i ExonRegion 0 88.13 39.62 148.46 93.43 51.90 179.40 27.74 165.27 235.47 165.38 78.22 21.95 41.52 100.31 188.62 113.93 92.29 159.66 106.26 77.71 187.19 248.60 203.69 53 E2_Df KnownBoundary 0 3.41 6.38 38.76 18.88 8.23 28.05 1.99 36.43 53.96 31.05 19.22 6.60 0.00 29.31 48.71 14.53 13.00 24.00 14.02 28.89 45.65 41.58 25.01 54 ER2j ExonRegion 0 6.41 14.29 62.97 41.42 15.46 39.89 4.49 46.28 62.37 50.11 16.48 16.84 8.47 22.47 48.11 17.75 16.05 44.50 18.94 18.85 36.48 32.82 28.80 55 E2_Dg KnownBoundary 0 13.56 20.92 79.86 71.99 14.60 63.88 6.14 64.08 65.42 69.79 12.11 11.70 21.59 16.25 50.68 20.85 12.16 60.15 25.51 14.64 26.19 31.41 16.82 56 ER2k ExonRegion 1 73.88 54.98 46.97 46.69 56.54 170.85 25.35 29.45 40.07 40.42 11.06 8.90 26.49 51.16 70.81 48.32 5.75 33.26 58.46 20.84 66.03 70.34 68.14 57 ER2l ExonRegion 0 1.41 0.54 0.25 2.36 7.14 3.55 0.97 1.50 0.41 1.30 0.00 0.58 2.50 4.01 1.93 0.40 0.00 1.60 0.42 0.57 0.44 1.53 0.39