Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 HMGA1 Gene 0 217.00 344.48 878.06 465.54 238.94 235.13 230.42 455.66 213.84 557.00 2343.50 911.64 838.44 2103.74 2565.23 1859.26 1536.17 651.25 1028.12 640.34 3347.06 1820.81 1355.04 2 311487 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 401473 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 395004 Transcript 0 0.00 0.00 3.67 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.07 0.00 0.00 5 374117 Transcript 0 0.00 0.00 2.42 0.00 0.00 0.00 0.00 2.26 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 0.00 2.66 0.00 0.00 6 430198 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 447654 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 357318 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 347617 Transcript 1 68.46 5.92 49.41 24.94 24.79 6.98 43.06 25.06 17.77 37.20 83.65 6.15 15.10 36.38 127.82 244.98 77.33 74.24 20.42 5.94 228.89 43.23 186.09 10 327014 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 478214 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 374116 Transcript 0 2.30 8.28 24.76 4.93 11.32 9.22 10.02 6.91 6.78 14.03 11.55 13.92 11.25 30.51 16.51 25.85 13.96 29.78 35.65 14.76 27.70 18.61 26.74 13 360434 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14 IG36_AR2 ActiveIntergenicRegion 0 0.00 0.00 2.15 0.00 1.95 0.00 0.00 1.73 0.00 2.06 2.54 37.73 0.00 3.90 0.00 0.00 1.98 0.00 0.00 0.00 0.00 0.00 0.00 15 IG36_SR3 SilentIntergenicRegion 0 0.42 0.00 0.55 0.40 1.59 0.58 0.16 1.55 0.73 1.96 1.60 24.62 0.00 1.75 0.69 0.13 2.26 0.00 0.00 0.00 0.87 1.49 0.00 16 ER1a ExonRegion 0 1.92 3.82 3.06 0.88 3.47 19.63 4.54 2.92 2.40 3.29 3.16 0.18 0.00 1.38 2.51 2.81 6.16 3.02 11.41 5.06 4.74 1.72 6.55 17 E1_Ab KnownBoundary 0 10.52 9.34 9.85 6.83 11.29 75.98 26.50 15.57 21.41 16.92 9.90 0.00 0.00 7.18 19.04 12.05 17.86 11.40 53.65 27.10 8.28 15.37 29.28 18 ER1b ExonRegion 1 275.48 212.53 101.05 44.35 140.98 414.78 274.41 124.89 43.90 99.41 843.62 68.50 75.98 951.66 820.47 911.29 485.45 244.13 659.62 160.35 1447.74 732.10 1017.94 19 E1_Da KnownBoundary 0 3.41 6.12 16.47 3.93 7.64 5.34 6.09 4.44 3.04 13.91 17.00 6.30 6.33 14.19 0.00 4.19 3.55 5.89 23.06 3.07 2.97 17.39 17.93 20 E1a_E1c KnownJunction 1 322.21 186.35 179.00 97.12 148.30 282.68 513.13 165.77 58.74 151.02 1036.89 98.58 77.11 745.19 778.42 932.66 612.15 445.25 309.56 202.17 2659.89 689.61 1053.38 21 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22 E1a_E4a KnownJunction 1 68.46 5.92 49.41 24.94 24.79 6.98 43.06 25.06 17.77 37.20 83.65 6.15 15.10 36.38 127.82 244.98 77.33 74.24 20.42 5.94 228.89 43.23 186.09 23 ER1c ExonRegion 0 9.50 13.20 20.12 5.00 11.87 20.40 22.27 11.37 3.61 28.62 58.42 7.53 2.67 91.72 28.87 68.06 44.24 15.21 80.26 44.05 133.98 120.33 62.12 24 E1_Ac KnownBoundary 0 44.90 62.09 70.49 40.02 40.83 94.04 134.30 39.68 3.44 99.79 357.72 17.26 0.00 129.08 153.53 490.90 309.86 61.85 174.69 208.56 1047.31 944.71 347.00 25 ER1d ExonRegion 1 63.33 63.06 101.09 23.37 36.84 86.46 113.92 65.73 23.86 88.31 739.92 114.37 79.40 470.98 570.49 330.72 493.94 86.52 146.16 145.04 1280.20 301.15 238.41 26 E1b_E4a KnownJunction 1 34.15 85.45 334.11 115.34 21.90 15.22 17.58 249.89 89.55 284.79 2107.69 257.03 293.49 911.24 746.40 402.03 1187.00 368.73 418.93 354.29 3839.46 496.73 411.88 27 ER2a ExonRegion 0 0.05 1.79 1.12 0.00 0.81 2.19 2.35 2.25 0.00 1.51 2.28 5.15 0.00 7.26 4.24 6.20 2.89 2.68 4.82 1.24 6.75 1.31 7.77 28 E2a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.34 0.00 0.00 29 ER3a ExonRegion 0 4.60 13.20 21.02 4.47 13.97 9.25 16.15 6.51 9.57 17.24 20.41 21.54 22.50 53.84 33.03 47.34 23.24 37.22 30.54 20.77 39.40 23.88 25.23 30 E3a_E4a KnownJunction 0 0.00 3.35 28.50 5.39 8.66 9.20 3.89 7.31 3.99 10.83 2.68 6.30 0.00 7.18 0.00 4.36 4.68 22.34 40.75 8.76 16.00 13.35 28.26 31 ER4a ExonRegion 1 145.15 210.95 563.10 252.86 107.33 123.52 89.53 353.14 152.19 419.92 2402.38 367.23 366.03 2492.48 1809.41 1974.75 1543.87 813.42 1409.42 691.16 4355.95 1909.52 1853.80 32 E4_Ab KnownBoundary 0 276.42 355.20 932.43 483.02 146.52 217.49 132.05 558.07 235.94 661.53 2442.93 568.69 543.47 4004.08 3078.07 3469.26 1725.48 1317.06 2598.85 1054.19 4014.85 3808.54 3352.98 33 ER4b ExonRegion 0 318.19 436.76 915.62 446.38 225.80 260.25 214.87 506.66 258.21 661.11 3259.25 825.86 581.29 2947.41 2853.94 2251.87 2304.38 930.81 1467.63 944.89 4393.52 2285.25 2011.57 34 E4_Da KnownBoundary 0 47.79 401.70 949.05 333.99 302.63 484.78 297.88 482.21 235.15 613.34 2114.75 835.47 697.84 1569.26 2001.12 1170.72 1604.11 567.12 510.04 768.54 3905.63 1161.84 713.21 35 E4a_E5a KnownJunction 0 38.90 70.91 169.27 88.53 114.01 145.26 71.99 155.26 86.31 145.94 871.91 276.54 213.46 584.20 824.90 364.18 501.26 184.84 186.55 139.08 1093.77 513.50 308.50 36 ER4c ExonRegion 0 42.52 346.20 911.45 350.67 395.28 540.41 350.25 458.98 209.89 571.75 2157.88 936.35 719.14 1745.24 1886.25 1454.36 1500.01 606.17 585.24 733.59 3603.20 1281.17 885.71 37 E4b_E5a KnownJunction 0 55.94 459.98 1186.77 488.65 618.17 801.87 627.29 600.58 264.35 715.87 2451.46 1116.81 936.79 1805.35 2183.58 1933.00 1622.44 818.29 894.99 929.93 3838.97 1694.58 1211.73 38 ER5a ExonRegion 0 159.40 462.90 1775.47 1002.78 502.80 685.29 638.05 1052.22 471.83 1178.20 4273.09 2410.03 2428.18 3399.79 4013.00 3587.05 2968.05 1737.57 1775.10 1404.00 6224.59 3712.30 2553.35 39 E5_Da NovelBoundary 0 55.34 210.55 1394.04 853.07 83.53 246.28 192.33 831.91 340.68 937.16 1368.40 481.06 505.81 608.69 700.29 1333.15 1015.15 1197.13 547.69 522.59 2519.53 1390.49 1010.78 40 E5a_E7a KnownJunction 0 0.00 0.00 3.67 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.07 0.00 0.00 41 E5b_E7a KnownJunction 0 0.00 0.00 2.42 0.00 0.00 0.00 0.00 2.26 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 0.00 2.66 0.00 0.00 42 E5c_E6a KnownJunction 0 339.17 536.94 2442.05 1592.01 632.60 693.86 931.35 1568.25 708.59 1746.24 6828.26 3606.28 3500.58 5388.87 8047.86 7166.75 4717.34 2093.89 4110.24 2549.66 8181.92 8015.89 5574.89 43 ER5b ExonRegion 0 262.45 524.66 2226.50 1407.86 470.93 673.00 787.76 1408.69 636.08 1576.99 5819.96 3580.47 3386.20 5102.98 6893.38 6051.25 4258.16 2278.28 3347.82 2063.82 7741.63 6856.86 4463.70 44 ER5c ExonRegion 0 264.70 513.73 2227.72 1427.62 502.04 668.88 788.50 1435.16 666.04 1622.22 6389.08 3509.30 3445.12 5327.01 7243.70 6401.59 4426.71 2260.14 3461.30 2175.79 7906.08 7035.91 4868.95 45 ER6a ExonRegion 0 104.71 253.64 1806.70 1180.61 235.94 278.85 322.19 1271.46 655.24 1517.69 5399.91 1865.66 2033.54 3242.03 4268.08 3658.75 3535.65 1682.47 1991.04 1471.92 6979.71 3842.05 2782.96 46 E6a_E7a KnownJunction 0 106.83 232.06 1465.74 978.36 216.38 186.65 206.77 1167.82 625.49 1430.43 5007.32 1493.44 1880.56 3340.59 4539.48 3007.59 3793.64 1467.20 1875.63 1296.18 7191.07 3482.29 2038.47 47 ER7a ExonRegion 0 217.57 383.17 930.77 492.06 212.13 232.12 212.47 574.14 299.57 767.37 3301.23 1778.52 1830.03 2859.93 3408.22 2143.63 2253.27 731.23 1168.87 846.16 4916.63 2444.74 1494.88 48 E7_Da KnownBoundary 0 522.61 692.44 850.27 410.04 609.59 452.98 491.09 458.55 244.27 656.59 3082.36 837.57 1069.09 3003.49 3020.34 1838.06 1775.31 737.21 1141.87 783.75 4617.98 1632.24 1194.57 49 ER7b ExonRegion 0 364.40 569.11 1423.60 752.99 398.35 328.41 341.85 670.98 304.92 806.60 3353.96 1208.50 1044.95 3129.59 4002.26 2831.14 2142.12 934.78 1538.47 903.61 4688.74 2638.96 2000.53 50 ER7c ExonRegion 0 0.00 10.17 4.90 2.73 0.00 0.00 1.32 1.73 0.00 1.15 9.66 4.33 4.69 21.11 20.31 5.94 3.30 1.85 9.56 0.00 13.22 8.33 11.75