Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 KCTD20 Gene 0 111.04 200.46 104.14 154.00 215.83 183.09 145.48 109.53 119.99 164.76 242.66 289.64 247.66 300.58 192.24 276.41 267.41 191.68 178.28 200.22 114.76 216.57 129.13 2 373731 Transcript 0 70.54 119.18 64.03 82.65 113.95 97.08 69.15 71.05 76.97 113.40 185.28 228.64 151.34 283.15 137.08 190.14 234.05 159.43 147.34 169.75 127.36 148.79 106.01 3 483557 Transcript 0 2.81 2.15 1.01 5.10 7.27 3.57 7.71 7.27 2.08 4.36 2.71 6.54 2.68 12.56 3.33 6.87 1.72 8.81 5.62 8.84 0.80 2.13 1.73 4 443316 Transcript 0 10.06 9.44 11.39 12.82 15.54 0.08 11.86 13.01 5.35 9.25 2.42 11.84 8.26 5.43 11.08 6.53 8.09 18.95 10.94 11.37 1.75 0.96 5.71 5 498267 Transcript 0 3.78 0.00 0.00 2.06 4.33 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 7.52 4.77 2.24 4.71 0.00 0.00 3.00 4.18 6 474988 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 0.00 0.00 3.12 0.00 7 481911 Transcript 0 0.00 0.00 2.99 0.00 0.00 2.84 2.12 5.09 0.00 4.46 15.37 0.00 0.00 2.12 0.00 8.72 0.00 13.97 19.20 2.75 0.00 3.06 0.00 8 449081 Transcript 0 0.00 0.00 1.51 1.50 0.00 0.00 0.00 0.00 4.63 0.00 2.68 0.00 0.00 0.00 0.00 0.00 9.16 0.00 0.00 0.00 2.53 0.00 0.00 9 265344 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 460983 Transcript 0 7.59 5.12 1.23 1.80 3.26 1.47 3.10 2.78 1.46 0.95 1.22 3.56 5.98 1.79 4.50 5.37 6.89 1.07 1.71 4.84 0.93 0.21 2.03 11 ER1a ExonRegion 0 0.40 0.28 0.01 0.00 0.57 2.96 1.01 0.16 0.10 0.44 2.37 0.00 0.00 1.18 1.11 2.81 5.92 0.38 3.46 1.09 1.12 0.35 0.52 12 E1_Ab KnownBoundary 0 0.00 3.16 0.00 0.00 0.00 17.21 2.25 0.00 1.36 0.00 6.69 5.70 0.00 3.00 0.00 19.40 8.98 13.10 0.00 0.00 5.44 0.00 6.74 13 E1_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 E1_Ad KnownBoundary 0 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 E1_Ae KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 E1_Af KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 5.74 4.50 2.51 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.92 4.71 3.26 0.00 0.00 0.00 17 E1_Ag KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 E1_Ah KnownBoundary 0 12.59 13.55 5.29 2.70 21.90 52.87 17.14 7.52 6.77 23.64 13.42 0.00 0.00 2.12 5.44 36.74 36.56 27.40 16.57 5.50 24.03 25.72 10.93 19 ER1b ExonRegion 0 6.35 2.03 1.23 0.00 0.00 48.78 14.83 1.73 1.48 4.36 9.66 0.00 0.00 19.49 16.25 23.78 25.09 6.28 12.74 12.77 11.02 6.25 9.98 20 ER1c ExonRegion 0 6.35 3.66 2.21 0.00 4.82 55.75 18.01 1.73 2.47 6.88 8.89 0.00 0.00 20.14 16.83 24.97 23.77 7.39 12.74 14.47 9.70 7.08 11.75 21 ER1d ExonRegion 0 6.35 4.07 2.45 0.00 5.35 60.52 21.18 1.73 2.47 6.88 9.66 0.00 1.17 21.11 18.13 26.75 27.23 7.39 15.13 14.89 8.81 10.42 11.75 22 ER1e ExonRegion 0 9.37 6.10 2.45 0.58 9.94 72.57 27.05 2.96 3.00 13.60 14.91 0.00 4.69 20.19 22.38 31.42 34.42 13.20 16.84 16.72 17.63 15.78 14.26 23 ER1f ExonRegion 0 15.61 14.74 2.45 1.36 21.41 93.98 34.09 5.83 4.94 22.51 27.06 0.00 8.21 23.55 29.38 53.13 47.45 28.18 21.50 21.54 31.40 33.86 24.59 24 ER1g ExonRegion 0 15.87 19.32 2.45 1.36 34.78 101.78 40.38 7.78 5.56 24.08 34.79 0.00 14.07 31.67 30.46 68.36 51.16 34.18 25.48 27.66 34.16 37.50 38.18 25 ER1h ExonRegion 0 10.99 17.58 3.11 6.95 37.57 69.43 35.40 12.50 12.72 28.69 48.06 4.15 10.60 38.27 37.24 62.78 61.27 67.18 39.88 42.12 43.56 33.68 44.81 26 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.49 0.00 0.00 3.16 27 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.70 0.00 3.58 0.00 0.00 0.00 3.84 28 E1a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 3.67 0.00 10.36 4.80 6.33 0.00 2.82 0.00 29 E1a_E6a KnownJunction 0 2.89 8.95 5.88 9.96 24.36 46.45 32.24 24.32 20.69 20.98 50.12 11.10 20.78 49.50 13.35 53.49 85.46 108.90 41.41 46.92 27.86 28.53 60.01 30 E1a_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 0.00 0.00 3.12 0.00 31 ER2a ExonRegion 0 5.34 7.74 8.48 8.79 12.81 2.32 3.66 9.15 6.27 5.47 5.47 2.41 0.00 5.06 10.58 13.44 13.76 6.08 9.53 12.20 4.99 1.51 6.78 32 E2_Da KnownBoundary 0 10.00 18.29 18.78 12.45 28.95 2.21 5.39 9.69 4.51 4.81 2.42 6.30 0.00 6.77 18.67 8.03 9.07 6.63 0.00 9.33 0.00 6.06 4.35 33 E2a_E6a KnownJunction 0 3.78 0.00 0.00 2.06 4.33 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 7.52 4.77 2.24 4.71 0.00 0.00 3.00 4.18 34 ER2b ExonRegion 0 10.06 9.44 11.39 12.82 15.54 0.08 11.86 13.01 5.35 9.25 2.42 11.84 8.26 5.43 11.08 6.53 8.09 18.95 10.94 11.37 1.75 0.96 5.71 35 E3_Aa NovelBoundary 0 11.04 6.38 30.07 29.63 23.68 2.78 7.91 35.90 13.74 12.65 2.63 25.96 46.10 0.00 0.00 11.28 4.11 6.84 4.80 11.63 3.15 0.00 11.27 36 ER3a ExonRegion 0 27.54 16.72 3.76 1.05 10.92 3.98 8.67 2.32 0.81 1.76 2.99 16.27 14.69 4.27 10.11 11.02 15.77 3.08 3.60 13.99 3.45 1.07 5.01 37 E3_Da NovelBoundary 0 144.17 89.19 48.14 67.99 123.51 63.71 124.54 69.74 57.41 51.95 27.01 19.66 55.84 7.00 41.04 71.35 51.89 74.24 37.27 77.66 40.65 5.57 34.32 38 E3a_E4a KnownJunction 0 3.26 0.00 0.00 0.00 0.00 0.00 2.03 2.34 1.33 0.00 2.00 0.00 0.00 2.47 0.00 7.78 0.00 1.82 0.00 2.62 0.00 0.00 0.00 39 E4_Aa NovelBoundary 0 80.61 54.73 30.34 49.18 45.25 85.80 64.12 32.37 34.23 31.56 14.42 12.30 14.12 12.54 4.57 27.51 20.10 41.95 50.17 61.17 16.62 10.90 21.77 40 ER4a ExonRegion 0 7.16 8.90 2.39 7.97 5.37 0.80 4.82 9.25 5.14 2.98 1.12 1.55 15.19 2.23 12.40 8.08 9.99 0.46 1.39 7.60 1.21 0.00 1.31 41 E4_Da NovelBoundary 0 63.05 33.42 112.50 104.42 76.99 35.15 92.34 87.73 97.57 103.77 6.95 16.51 23.86 7.06 26.45 48.53 26.09 87.92 17.32 34.07 18.72 2.27 10.93 42 E4a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43 ER5a ExonRegion 0 5.53 1.33 1.88 6.88 18.48 8.03 14.55 7.60 2.26 4.95 5.44 19.62 8.04 8.53 5.54 5.73 5.15 6.41 2.57 11.94 0.00 3.57 0.84 44 E5a_E6a KnownJunction 0 2.89 5.13 1.15 8.42 3.31 2.67 8.57 14.21 3.99 8.14 2.68 0.00 0.00 26.66 4.45 11.19 0.00 9.66 9.51 8.25 2.41 0.00 4.35 45 ER6a ExonRegion 0 15.34 34.10 24.38 39.16 37.89 43.67 35.64 42.32 68.51 84.29 181.81 143.40 92.23 167.27 63.11 180.87 196.39 150.35 95.84 158.85 109.88 111.98 98.56 46 E6a_E7a KnownJunction 1 3.41 46.64 35.16 63.06 80.73 95.12 61.03 46.91 102.26 129.45 187.73 168.81 155.35 262.11 72.07 145.35 221.51 252.33 120.66 150.27 131.40 103.06 81.86 47 E6a_E8a KnownJunction 0 0.00 5.20 1.83 7.46 3.74 7.10 8.79 6.90 13.69 8.95 28.48 41.11 18.99 21.13 8.90 39.22 26.65 25.08 12.71 20.13 8.46 27.56 16.05 48 E6a_E10a KnownJunction 0 0.00 0.00 1.51 1.50 0.00 0.00 0.00 0.00 4.63 0.00 2.68 0.00 0.00 0.00 0.00 0.00 9.16 0.00 0.00 0.00 2.53 0.00 0.00 49 ER7a ExonRegion 1 23.78 62.74 33.28 62.48 98.26 168.69 106.81 42.51 96.27 123.64 307.83 300.96 174.41 298.76 83.94 258.46 308.58 219.81 163.56 224.81 173.44 158.39 111.36 50 E7_Da KnownBoundary 1 28.89 82.09 39.21 55.94 84.30 105.45 109.70 41.61 71.12 98.99 268.17 384.73 294.95 412.03 91.60 205.50 322.95 139.70 111.81 225.76 165.07 122.34 69.06 51 ER7b ExonRegion 1 19.58 63.68 40.40 60.52 62.04 108.71 94.54 65.30 87.42 119.39 268.79 333.64 267.48 365.38 86.13 238.70 333.80 218.61 159.37 235.90 172.51 162.84 120.68 52 E7_Db KnownBoundary 1 32.15 58.54 17.00 41.69 59.51 119.53 100.65 51.96 58.82 83.27 233.74 318.70 273.03 338.87 79.61 264.03 303.79 166.23 196.52 230.80 155.06 173.17 157.92 53 ER7c ExonRegion 1 31.39 68.12 34.75 77.31 67.49 84.41 72.49 67.55 98.71 125.62 233.56 353.93 225.12 351.71 94.61 320.49 298.73 245.03 185.28 231.15 165.71 187.23 186.15 54 E7_Dc KnownBoundary 1 49.49 82.62 27.29 80.78 92.44 60.53 50.57 42.72 86.25 113.41 230.69 346.16 207.45 373.71 103.96 331.71 290.23 201.71 161.51 239.95 158.95 202.32 195.82 55 ER7d ExonRegion 1 19.35 81.05 42.88 85.12 105.30 106.76 68.40 63.11 97.53 145.91 274.66 372.87 218.47 425.88 113.87 293.19 334.68 271.46 212.96 248.59 196.17 186.37 142.30 56 E7d_E8a KnownJunction 1 30.45 131.23 37.17 69.39 109.68 119.31 69.60 65.10 91.14 127.94 265.07 429.14 257.29 459.95 63.79 224.73 354.28 219.33 231.35 246.85 194.04 214.50 154.59 57 E7d_E10a NovelJunction 1 0.00 2.76 4.17 4.99 0.00 0.00 4.46 4.39 3.21 2.47 5.16 6.30 32.47 12.01 5.19 11.88 32.63 6.30 22.31 11.76 3.15 0.00 3.33 58 E7d_E11a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.00 6.82 2.47 0.00 0.00 11.69 0.00 0.00 0.00 0.00 0.00 0.00 59 ER8a ExonRegion 1 30.95 111.83 41.62 89.32 114.49 111.26 91.79 75.62 107.78 147.64 308.16 350.77 270.15 359.23 109.74 301.92 347.88 276.28 226.28 245.49 174.46 237.14 154.10 60 E8a_E9a KnownJunction 0 32.15 104.98 26.26 103.12 123.60 135.94 130.15 66.01 109.06 156.93 314.03 301.00 385.36 413.68 133.88 271.04 291.26 282.71 242.08 287.12 113.61 249.96 153.91 61 E8a_E10a KnownJunction 0 0.00 0.00 2.99 0.00 0.00 2.84 2.12 5.09 0.00 4.46 15.37 0.00 0.00 2.12 0.00 8.72 0.00 13.97 19.20 2.75 0.00 3.06 0.00 62 I8 Intron 0 17.35 13.85 25.37 22.58 28.26 15.29 22.26 19.33 16.88 13.78 3.76 15.39 19.59 9.03 17.05 16.93 11.93 11.63 11.95 8.57 3.06 6.37 6.53 63 I8_SR1 SilentIntronRegion 0 17.45 13.92 25.51 22.69 28.41 15.37 22.38 19.43 16.97 13.85 3.78 15.48 19.69 9.08 17.15 17.02 11.99 11.69 12.02 8.62 3.07 6.40 6.57 64 E9_Aa NovelBoundary 0 31.12 18.62 28.44 35.06 43.72 36.63 39.44 41.77 30.90 17.30 0.00 18.91 19.15 9.36 14.34 27.51 4.77 3.27 8.94 17.83 3.15 14.88 4.10 65 ER9a ExonRegion 0 38.66 99.34 44.83 84.77 135.14 178.91 119.52 82.82 107.83 161.60 318.74 375.16 306.91 421.79 138.01 334.92 364.54 281.44 206.81 277.12 144.99 255.33 170.57 66 E9_Da NovelBoundary 0 46.60 20.26 18.57 20.48 93.55 54.29 69.64 17.50 27.66 18.19 7.90 31.96 6.82 9.83 8.90 19.57 7.95 7.59 17.88 8.76 8.59 5.51 4.35 67 E9a_E10a KnownJunction 0 33.34 117.81 39.24 93.73 129.46 147.07 76.75 78.94 95.28 186.37 299.08 390.88 370.59 393.02 127.33 420.15 324.82 322.55 172.15 301.69 117.81 249.04 158.43 68 I9 Intron 0 21.29 18.39 18.27 36.41 37.66 22.08 24.59 17.64 18.32 15.18 5.07 25.47 30.11 6.53 12.87 16.86 13.60 9.30 11.08 16.97 5.66 9.92 10.53 69 I9_SR1 SilentIntronRegion 0 21.09 19.53 17.73 35.86 38.71 21.84 24.94 18.28 17.61 14.68 4.51 22.84 29.48 6.57 12.22 15.66 12.12 9.30 11.65 16.92 5.55 9.88 11.13 70 I9_AR1 ActiveIntronRegion 0 22.92 11.51 21.98 40.43 31.64 23.97 22.73 13.87 23.11 18.60 8.70 42.50 34.53 6.36 17.14 24.69 23.18 9.48 7.64 17.50 6.39 10.35 6.87 71 E10_Aa NovelBoundary 0 33.04 15.92 36.01 48.58 18.59 12.66 45.93 45.26 24.45 24.63 4.74 55.22 52.11 4.89 0.00 23.58 21.04 41.45 12.52 30.17 6.18 14.21 11.18 72 ER10a ExonRegion 1 54.40 139.98 54.09 94.94 146.81 164.83 122.33 84.90 117.07 182.19 290.97 378.65 322.48 424.15 129.97 325.55 343.51 279.98 193.73 250.88 168.70 224.08 156.75 73 E10_Da NovelBoundary 0 17.04 17.17 40.30 25.04 43.55 44.46 19.70 26.62 36.43 30.84 12.74 43.66 41.39 21.78 35.48 31.27 17.67 24.58 11.39 15.15 18.22 21.25 19.97 74 E10a_E11a KnownJunction 1 49.34 169.77 49.35 77.78 193.46 202.10 169.94 87.45 99.02 189.91 383.31 230.48 220.28 498.97 131.41 377.00 395.51 287.94 238.78 219.17 173.72 280.33 106.36 75 I10 Intron 0 22.92 15.14 17.17 22.76 30.59 20.28 24.79 19.56 18.55 12.98 10.18 23.49 29.36 8.88 11.67 16.32 13.90 12.51 6.23 17.93 7.13 17.24 13.48 76 I10_AR1 ActiveIntronRegion 0 26.17 18.55 20.34 27.91 36.31 24.16 31.02 26.77 29.03 17.27 17.01 28.72 28.44 12.33 14.28 24.64 19.93 19.87 8.54 27.52 12.89 20.61 21.61 77 ER11a ExonRegion 1 53.07 144.00 56.36 80.05 230.52 218.01 157.61 97.76 129.72 191.75 320.04 403.46 334.43 498.74 126.90 436.39 322.15 286.45 239.53 208.87 145.66 248.39 178.45 78 E11_Da NovelBoundary 0 76.24 21.64 3.84 10.19 37.10 2.50 55.69 5.96 4.75 8.33 0.00 0.00 12.99 0.00 0.00 11.62 4.30 1.58 4.24 0.00 2.72 2.51 4.35 79 E11a_E12a KnownJunction 1 63.72 128.14 67.12 106.85 147.45 119.19 117.25 126.88 117.65 191.71 255.64 646.11 384.88 440.52 108.78 487.74 337.82 360.64 246.31 213.93 72.96 334.03 340.68 80 ER12a ExonRegion 0 50.04 130.97 62.19 115.05 160.30 199.39 144.22 93.96 146.57 173.56 285.28 344.66 234.11 425.33 131.13 405.05 330.63 363.32 248.63 239.12 165.27 276.81 199.61 81 E12_Da KnownBoundary 1 73.42 137.21 39.95 89.47 118.51 187.11 177.58 58.78 136.02 143.71 286.70 292.60 296.41 356.11 101.74 317.35 322.58 253.69 160.48 247.74 107.86 148.92 95.09 82 ER12b ExonRegion 0 55.26 156.59 68.09 115.07 222.51 230.45 172.46 112.24 145.45 168.49 309.33 264.41 275.56 389.60 139.17 317.60 368.51 233.54 200.67 242.55 163.99 235.97 137.29 83 E12_Db KnownBoundary 0 79.79 271.93 121.20 147.93 214.09 188.07 179.17 103.55 174.13 177.21 287.81 382.17 305.50 377.01 166.76 364.69 301.92 192.47 242.74 236.75 130.54 335.07 129.41 84 ER12c ExonRegion 0 89.71 321.85 100.42 200.27 308.44 254.36 211.85 126.13 178.49 203.92 353.18 639.67 414.46 416.08 178.88 399.84 375.54 254.36 258.98 281.61 157.63 313.92 146.95 85 E12_Dc KnownBoundary 0 91.87 345.99 141.98 243.49 430.22 281.60 221.83 146.92 166.06 211.54 314.40 621.95 605.32 404.62 215.59 385.88 431.23 394.01 321.23 341.96 221.72 284.86 245.59 86 ER12d ExonRegion 0 172.84 306.91 164.42 249.36 333.61 264.47 212.65 155.65 157.89 226.45 304.83 379.87 361.58 357.82 270.55 335.18 319.04 203.93 227.17 245.52 116.53 289.13 155.29 87 E12_Dd KnownBoundary 0 1373.87 1683.52 1574.22 1839.73 1429.37 1057.69 1394.44 1872.07 1707.85 1545.34 602.26 300.25 455.16 352.52 569.75 1453.89 1113.79 1872.16 1097.44 1239.29 776.60 692.92 1241.01 88 ER12e ExonRegion 0 231.97 264.15 176.06 176.08 240.24 159.28 137.58 155.82 119.12 179.30 199.01 112.53 129.61 245.61 369.57 239.82 241.33 146.54 141.59 182.48 118.09 193.96 126.63 89 IG32 Intergenic 0 20.10 13.55 6.56 12.06 18.73 5.42 11.66 7.39 8.55 7.25 1.55 3.59 5.94 3.16 8.25 9.64 7.01 8.54 8.86 10.74 2.91 2.69 4.30 90 IG32_SR2 SilentIntergenicRegion 0 20.64 13.92 6.74 12.39 19.24 5.57 11.98 7.59 8.79 7.45 1.59 3.69 6.10 3.24 8.48 9.90 7.20 8.77 9.10 11.03 2.98 2.76 4.41