Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 BRPF3 Gene 0 33.47 59.80 73.98 73.50 84.46 135.88 54.74 102.42 144.27 131.63 94.74 51.91 71.31 92.09 72.06 69.19 72.87 140.86 120.56 88.53 119.36 159.04 107.02 2 443324 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 357641 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 339717 Transcript 0 0.00 2.96 0.00 2.06 0.00 8.40 0.00 4.89 1.79 4.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.99 0.00 2.62 0.00 0.00 0.00 5 446974 Transcript 0 0.00 0.00 0.00 0.51 0.00 12.32 0.00 0.00 0.61 1.08 0.00 0.00 0.00 0.00 1.15 1.33 1.48 2.35 4.08 0.95 0.99 0.00 0.62 6 454960 Transcript 0 0.00 0.00 1.22 1.00 1.04 13.57 0.51 0.00 4.72 7.45 4.56 0.53 0.00 2.23 2.75 6.82 0.00 6.83 7.99 3.39 2.90 0.00 0.00 7 441123 Transcript 0 0.00 0.00 0.00 2.06 0.00 8.46 0.00 2.14 1.07 1.05 2.68 0.00 0.00 2.12 0.00 0.00 0.00 0.00 0.00 0.00 2.35 0.00 0.00 8 394572 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 449261 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 441730 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 ER1a ExonRegion 0 0.00 1.29 0.51 0.03 0.00 1.06 0.57 0.78 2.77 2.89 8.44 4.08 3.84 9.45 2.63 4.43 3.42 6.81 14.28 7.56 16.64 6.95 13.53 12 E1a_E3a KnownJunction 0 0.00 15.59 7.48 1.30 0.00 2.56 4.02 8.30 24.59 20.15 20.58 11.40 21.26 19.01 10.63 8.12 9.44 43.94 29.65 9.14 39.72 33.07 28.17 13 ER1b ExonRegion 0 0.00 8.13 6.13 4.43 0.00 3.67 2.65 1.73 19.14 14.91 18.85 8.66 14.07 27.20 10.15 5.94 6.60 38.34 29.46 15.43 44.63 32.82 21.29 14 ER2a ExonRegion 0 0.00 0.00 0.00 1.03 0.00 24.64 0.00 0.00 1.21 2.15 0.00 0.00 0.00 0.00 2.29 2.66 2.95 4.70 8.16 1.90 1.97 0.00 1.24 15 E2_Ab KnownBoundary 0 0.00 0.00 0.00 2.06 0.00 56.39 0.00 0.00 4.92 2.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.38 3.67 0.00 0.00 0.00 4.35 16 ER2b ExonRegion 0 0.00 0.00 0.44 1.00 6.48 68.95 1.71 0.00 2.96 1.96 4.51 1.15 0.00 1.01 0.39 5.35 0.00 4.52 4.46 3.22 1.71 0.00 1.76 17 E2_Da KnownBoundary 0 0.00 0.00 1.39 1.60 16.38 122.03 6.36 0.00 4.77 5.32 7.42 6.30 0.00 3.00 0.00 17.17 0.00 5.97 13.65 12.14 2.90 0.00 0.00 18 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 ER2c ExonRegion 0 0.00 0.00 0.60 0.00 2.09 27.13 1.02 0.00 4.64 6.66 4.23 1.06 0.00 1.98 0.31 6.81 0.00 6.82 11.37 6.78 2.58 0.00 0.00 20 E2b_E3a KnownJunction 0 0.00 0.00 1.83 2.00 0.00 0.00 0.00 0.00 4.80 8.25 4.90 0.00 0.00 2.47 5.19 6.84 0.00 6.84 4.61 0.00 3.21 0.00 0.00 21 ER3a ExonRegion 1 3.39 16.88 20.58 12.87 7.01 48.46 7.57 17.30 56.18 54.92 36.29 10.67 11.73 44.07 14.03 37.31 23.20 43.96 49.00 52.46 75.45 39.78 68.88 22 E3_Ab KnownBoundary 1 3.78 31.11 23.59 19.91 11.97 109.37 27.03 22.71 93.23 67.37 58.75 12.15 19.80 62.22 13.35 32.38 42.26 66.16 70.40 90.06 72.90 28.96 36.11 23 ER3b ExonRegion 0 6.28 23.66 48.83 43.85 33.70 103.81 26.83 62.88 146.89 130.29 114.44 55.40 77.66 88.71 47.14 61.12 86.00 168.91 189.67 117.75 136.59 152.78 101.43 24 E3_Da KnownBoundary 0 7.04 25.06 52.25 63.63 38.88 62.07 32.33 100.02 187.06 167.97 114.77 67.22 94.64 91.59 54.89 45.29 60.03 172.40 142.59 131.99 197.56 124.18 69.40 25 ER3c ExonRegion 0 6.14 27.32 44.19 45.62 42.84 94.47 24.64 68.04 168.51 137.30 136.76 78.92 100.63 115.23 64.23 70.12 96.87 206.93 224.84 123.38 166.74 192.92 133.20 26 E3_Db KnownBoundary 0 9.71 32.82 82.34 68.52 57.39 78.25 33.17 74.51 177.89 156.42 133.24 111.64 126.29 111.25 76.77 75.36 118.47 204.28 291.77 155.57 171.12 247.87 160.31 27 ER3d ExonRegion 0 8.29 27.81 44.29 40.84 38.56 81.48 32.60 60.50 119.94 108.34 94.12 47.33 55.46 86.85 49.40 67.58 70.79 166.79 128.27 100.92 131.83 124.96 101.57 28 E3c_E4a KnownJunction 0 18.23 30.26 44.94 37.59 54.50 98.69 46.59 65.76 130.64 146.51 87.34 60.92 90.42 93.00 63.91 60.58 66.39 119.26 146.73 87.50 142.40 115.36 86.56 29 E3c_E5a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.06 1.77 0.99 0.00 0.00 0.00 0.00 0.00 0.00 3.65 4.02 0.00 0.00 3.15 8.39 8.54 30 ER4a ExonRegion 0 11.03 26.81 45.11 36.60 39.59 82.59 35.36 63.44 100.55 105.32 63.29 46.74 43.26 66.00 41.65 57.89 50.99 115.43 115.57 64.21 107.93 120.67 81.65 31 E4a_E5a KnownJunction 0 13.11 46.97 48.25 31.06 74.11 109.37 65.58 74.80 122.37 98.69 88.60 30.61 66.55 83.58 55.88 29.91 50.30 154.00 109.65 77.15 131.46 96.32 68.72 32 ER5a ExonRegion 1 8.77 52.29 45.30 24.53 74.84 93.52 54.81 70.08 120.86 110.59 92.67 46.14 45.56 88.82 62.50 34.99 79.98 147.34 103.39 73.25 151.74 122.63 83.23 33 E5_Ab KnownBoundary 1 10.82 76.83 56.00 23.31 101.61 100.85 48.49 79.89 144.50 127.78 82.76 56.12 41.56 96.12 91.48 39.05 99.39 151.97 115.58 77.53 157.72 162.88 102.18 34 ER5b ExonRegion 0 11.91 59.25 56.72 30.38 70.15 91.03 52.89 59.00 117.95 93.99 74.01 35.39 38.83 58.33 58.50 59.04 70.58 101.76 105.48 67.14 127.18 131.97 91.16 35 E5a_E6a KnownJunction 0 13.41 74.66 62.00 60.20 69.10 57.35 43.72 74.59 109.46 113.33 106.18 56.12 55.35 69.69 54.64 91.51 74.05 120.09 123.86 71.59 153.52 145.37 115.58 36 ER6a ExonRegion 0 23.51 62.49 66.67 52.57 44.45 123.26 49.40 87.86 140.79 129.36 106.65 59.20 61.08 109.36 71.29 72.99 86.80 170.08 165.84 118.55 129.51 181.51 112.43 37 E6a_E7a KnownJunction 0 0.00 20.92 10.32 5.56 4.33 19.87 11.00 4.60 8.94 11.52 12.63 0.00 5.84 9.48 4.45 3.85 4.77 25.66 0.00 5.62 8.71 16.90 13.06 38 E6a_E7b KnownJunction 1 19.86 58.28 103.31 62.93 43.63 119.19 38.33 75.58 141.75 144.79 113.66 121.84 28.08 64.16 83.81 43.41 101.54 117.19 125.84 86.42 101.99 130.86 86.73 39 E7a_E7b NovelJunction 0 0.00 18.02 1.42 5.09 7.81 7.55 12.90 4.48 10.10 11.82 2.68 6.30 0.00 4.41 14.46 7.09 8.98 11.28 4.42 26.01 23.23 19.41 12.21 40 ER7a ExonRegion 0 0.00 20.61 6.37 6.63 5.53 20.05 12.97 8.64 12.43 20.57 11.60 8.66 4.06 11.80 10.06 10.30 10.12 27.47 5.31 20.43 22.18 22.92 21.34 41 ER7b ExonRegion 1 16.93 63.04 87.00 64.06 42.81 111.86 48.99 88.15 144.51 152.54 131.44 99.58 32.83 82.83 89.94 44.58 102.33 157.06 143.34 104.25 130.02 139.60 129.21 42 ER7c ExonRegion 0 16.74 59.93 59.04 60.38 54.34 108.46 57.75 83.79 121.75 133.74 91.50 53.01 60.77 98.50 66.02 67.26 74.22 124.84 140.22 100.41 103.63 144.91 116.95 43 E7b_E8a KnownJunction 0 23.63 32.95 66.94 48.91 23.60 66.78 42.18 86.95 140.65 154.56 106.61 33.01 69.31 147.27 78.87 65.54 83.87 135.01 184.38 113.96 134.37 115.30 118.31 44 E7b_E10a KnownJunction 0 0.00 2.96 0.00 2.06 0.00 8.40 0.00 4.89 1.79 4.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.99 0.00 2.62 0.00 0.00 0.00 45 ER8a ExonRegion 0 9.88 30.44 54.43 35.02 20.58 76.43 40.34 64.93 120.29 111.65 86.43 32.15 51.73 80.75 50.89 46.76 73.45 143.65 86.61 77.81 133.85 102.95 82.60 46 E8a_E9a KnownJunction 0 3.63 39.99 43.29 45.58 23.34 54.57 34.45 68.35 143.20 130.33 95.66 43.21 40.91 71.69 71.45 98.44 48.53 168.96 92.43 90.76 174.03 134.96 114.13 47 ER9a ExonRegion 0 14.57 44.95 64.62 61.40 50.70 114.61 43.97 91.59 146.32 139.65 106.88 39.41 51.39 108.88 61.15 75.30 82.91 209.61 140.76 89.89 165.78 146.53 122.09 48 E9_Da KnownBoundary 0 32.30 34.27 80.07 110.18 92.61 134.01 101.93 101.17 156.88 165.98 111.66 48.62 66.07 132.14 64.78 95.19 49.65 223.02 163.11 80.92 157.90 105.57 114.64 49 E9a_E14b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 50 ER9b ExonRegion 0 12.79 40.60 51.73 46.70 43.16 88.63 42.47 68.12 100.93 107.09 78.31 19.75 30.60 82.76 50.93 53.28 60.04 119.21 87.30 76.03 122.53 108.12 89.33 51 E9b_E10a KnownJunction 0 10.89 49.53 74.01 44.72 69.78 114.42 40.67 77.34 129.63 133.26 83.76 17.71 45.78 104.95 44.87 70.58 75.36 123.74 123.49 111.98 158.27 172.49 121.98 52 ER10a ExonRegion 0 15.40 41.20 69.39 51.99 50.44 121.13 48.94 93.72 163.70 148.84 86.80 25.01 32.74 107.85 58.78 51.68 76.65 152.44 91.14 109.18 150.67 144.80 113.01 53 E10_Ab KnownBoundary 1 25.34 46.64 93.43 79.11 45.50 161.33 60.64 126.30 208.45 173.10 114.24 18.61 39.93 95.89 75.04 69.81 69.28 209.80 108.24 131.03 158.21 165.02 154.25 54 ER10b ExonRegion 1 17.25 40.21 77.81 71.11 55.99 115.21 42.83 98.57 166.31 142.99 129.41 16.99 42.80 83.93 67.09 68.80 87.06 220.02 94.53 126.54 140.82 148.40 123.49 55 E10a_E11a KnownJunction 1 28.89 47.43 88.94 77.55 86.08 61.44 39.30 80.63 145.51 124.16 118.82 5.85 61.36 79.17 87.52 96.64 87.05 222.31 111.16 132.82 105.15 135.75 125.23 56 E10a_E12a KnownJunction 0 0.00 0.00 0.00 0.00 7.98 0.00 2.21 4.23 4.54 2.79 0.00 0.00 0.00 2.77 5.32 0.00 13.00 12.56 0.00 0.00 2.90 23.33 4.35 57 E10a_E14a KnownJunction 0 0.00 0.00 0.00 2.06 0.00 8.46 0.00 2.14 1.07 1.05 2.68 0.00 0.00 2.12 0.00 0.00 0.00 0.00 0.00 0.00 2.35 0.00 0.00 58 E11_Aa NovelBoundary 0 16.67 32.56 1.21 8.42 23.09 15.62 30.65 19.14 26.30 7.55 2.26 6.00 0.00 2.47 8.90 3.76 4.11 15.59 0.00 14.19 12.17 8.21 11.27 59 ER11a ExonRegion 0 12.74 39.86 66.06 51.57 53.82 79.83 22.62 75.91 132.84 104.94 90.57 25.00 24.02 87.04 52.55 51.01 57.50 138.75 102.87 93.07 127.61 117.91 103.77 60 E11a_E12a KnownJunction 0 18.89 55.38 72.44 52.14 50.68 127.60 27.73 94.84 142.97 124.75 96.39 24.76 63.63 127.08 82.21 42.72 79.29 122.87 104.85 91.15 154.01 126.81 90.40 61 ER12a ExonRegion 1 14.64 50.96 64.09 40.04 41.88 96.74 34.77 75.66 117.63 118.74 82.01 11.31 34.51 88.23 64.06 49.86 75.45 134.90 77.23 97.42 131.50 97.84 79.95 62 E12a_E13a KnownJunction 0 34.23 73.14 69.96 35.53 31.66 124.87 34.31 68.96 118.72 93.88 66.54 11.55 24.84 87.47 98.77 43.92 37.96 126.72 56.38 80.66 116.88 85.05 54.12 63 E12a_E14a NovelJunction 0 0.00 0.00 4.49 3.46 4.33 0.00 4.46 0.00 4.22 6.39 5.37 0.00 0.00 0.00 8.90 8.54 4.21 8.58 0.00 2.62 0.00 8.82 0.00 64 ER13a ExonRegion 1 13.74 55.35 63.57 50.63 48.16 117.98 39.51 78.84 129.54 117.58 82.97 10.87 37.91 96.72 66.17 49.91 65.19 129.25 95.21 92.38 133.09 133.43 93.56 65 E13_Da NovelBoundary 0 6.89 6.51 6.24 1.50 15.28 42.31 18.24 8.30 18.11 25.38 7.42 0.00 0.00 10.95 14.59 6.41 13.18 29.02 17.51 36.50 38.24 8.94 15.45 66 E13a_E14a KnownJunction 0 3.78 60.12 49.67 39.19 28.95 111.64 36.17 49.00 122.74 105.59 54.22 19.36 33.44 73.11 38.69 56.57 72.65 78.06 76.99 50.11 80.99 71.83 50.11 67 I13 Intron 0 9.55 18.97 7.83 12.22 20.53 38.49 12.75 20.54 25.89 25.20 15.27 7.41 11.64 14.19 9.12 15.65 13.16 41.73 22.28 19.85 29.33 19.12 17.01 68 I13_SR1 SilentIntronRegion 0 3.33 7.68 1.72 6.39 8.42 27.71 6.67 9.73 12.17 9.14 10.34 2.08 1.22 10.26 3.87 9.36 8.31 27.76 16.04 13.40 14.57 11.81 10.19 69 I13_AR2 ActiveIntronRegion 0 11.55 22.60 9.78 14.10 24.41 42.03 14.72 24.02 30.32 30.36 16.88 9.12 14.97 15.49 10.81 17.69 14.74 46.29 24.34 21.96 34.09 21.50 19.23 70 E14_Aa NovelBoundary 0 13.04 16.97 22.06 23.24 24.28 72.29 26.59 31.13 38.34 40.35 25.64 12.30 6.82 7.12 13.35 7.35 12.16 75.90 39.25 17.39 45.90 9.00 26.72 71 ER14a ExonRegion 1 16.56 51.53 89.54 67.91 55.58 147.72 48.04 103.47 166.50 142.37 95.46 17.93 30.71 96.53 72.34 74.22 81.11 198.28 110.90 95.88 149.37 156.33 108.97 72 E14_Ab KnownBoundary 0 22.52 45.06 153.28 82.11 35.06 83.30 30.78 134.60 161.54 163.94 79.65 18.76 25.97 64.92 50.07 54.26 77.42 154.91 153.79 93.77 146.66 112.73 55.14 73 ER14b ExonRegion 1 19.38 60.91 101.65 63.58 43.84 119.09 38.01 95.21 151.98 132.00 106.50 18.88 37.07 81.70 54.08 66.03 78.47 137.22 103.62 98.10 151.26 174.71 89.55 74 E14_Da KnownBoundary 0 26.08 90.51 85.27 79.28 52.04 188.75 55.07 101.99 144.50 109.09 83.81 30.31 26.30 91.94 55.63 56.31 34.32 166.68 51.67 103.80 101.81 142.37 77.85 75 ER14c ExonRegion 0 80.24 110.52 123.81 138.96 179.16 234.23 96.04 181.36 207.57 185.44 119.31 87.21 126.07 117.72 118.76 96.39 90.24 148.86 142.89 96.38 121.54 244.33 140.74 76 ER14d ExonRegion 0 3.17 6.10 0.92 1.70 8.03 4.13 8.94 2.16 3.40 1.15 0.97 1.08 1.17 1.22 4.35 0.00 0.00 0.00 0.00 2.13 0.00 1.56 0.73