Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TBC1D22B Gene 0 37.88 46.40 47.77 45.83 59.21 85.21 35.42 55.02 52.49 63.55 179.91 48.00 96.27 131.09 99.25 99.26 111.99 60.43 45.24 45.83 54.68 64.36 57.49 2 373491 Transcript 0 29.69 57.14 38.36 45.06 57.16 91.05 39.84 55.06 54.55 73.07 199.92 58.62 134.11 156.75 88.62 113.06 125.49 76.21 53.57 57.61 56.21 74.95 66.09 3 ER1a ExonRegion 0 13.16 23.46 13.22 3.44 6.89 24.18 8.29 7.78 10.10 19.15 42.02 8.19 14.74 39.45 23.66 36.42 31.08 24.74 22.44 16.43 12.74 21.69 32.72 4 E1a_E2a KnownJunction 1 3.70 20.52 34.18 10.52 22.50 16.75 1.81 20.37 30.44 49.94 136.46 35.86 66.72 134.09 27.81 58.79 73.59 41.91 67.86 50.62 38.98 70.72 69.74 5 ER2a ExonRegion 0 2.67 37.82 37.00 27.40 21.55 14.77 7.01 34.45 35.15 65.09 140.32 40.33 66.07 150.96 81.79 150.12 82.70 66.36 62.31 62.19 35.65 77.75 119.84 6 E2a_E3a KnownJunction 1 0.00 46.90 47.25 36.76 28.95 17.26 12.81 57.46 44.91 69.36 135.77 86.13 119.15 103.36 68.85 207.55 67.13 84.40 52.52 56.57 30.39 68.52 127.36 7 ER3a ExonRegion 0 13.35 41.65 42.90 46.42 37.92 59.99 23.72 67.96 58.55 87.90 201.50 85.32 168.84 149.96 78.72 129.31 156.43 73.62 58.60 65.21 74.53 84.61 65.77 8 E3a_E4a KnownJunction 0 27.86 40.52 41.04 47.61 27.16 43.04 27.34 69.66 84.14 86.98 206.37 74.42 144.15 156.63 61.07 123.90 140.44 130.50 36.61 49.92 81.30 78.50 73.33 9 E3a_E5a NovelJunction 0 0.00 17.17 0.00 3.83 0.00 5.56 0.00 3.24 8.22 2.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.59 0.00 9.40 0.00 0.00 0.00 10 ER4a ExonRegion 0 8.30 34.16 22.13 24.55 44.71 78.90 25.91 38.18 43.00 59.11 161.52 59.51 158.26 157.11 75.75 124.90 121.33 89.59 50.12 38.79 74.63 69.14 60.02 11 E4a_E5a KnownJunction 0 16.97 16.97 13.33 25.70 53.23 80.98 30.60 29.04 26.36 48.35 136.35 60.77 127.26 209.43 98.77 71.43 101.54 64.34 34.92 62.13 52.08 39.07 39.10 12 ER5a ExonRegion 0 14.85 44.05 14.20 15.24 28.11 61.37 26.68 24.37 37.11 57.15 162.47 38.17 138.12 139.31 58.84 73.47 97.96 67.22 42.53 40.81 49.69 57.19 54.14 13 E5a_E6a KnownJunction 0 16.37 46.50 10.44 12.29 22.50 78.36 43.77 35.53 50.03 61.92 113.77 45.16 79.70 162.99 61.31 70.84 89.67 71.63 52.14 23.91 30.09 61.72 31.16 14 ER6a ExonRegion 0 20.30 73.81 16.93 35.34 57.39 76.47 46.87 45.89 59.66 70.19 205.88 37.66 117.32 163.27 81.98 80.41 123.54 78.06 40.10 57.41 54.63 66.79 47.83 15 E6a_E7a KnownJunction 0 42.16 43.54 21.32 45.48 74.28 147.64 52.69 50.93 57.12 69.57 150.04 49.97 175.48 158.16 67.50 86.47 142.78 61.85 64.66 91.53 49.48 88.18 55.83 16 E7_Aa NovelBoundary 0 9.63 6.71 0.00 2.90 4.24 8.01 18.20 8.34 1.79 1.67 2.32 0.00 6.01 0.00 0.00 12.30 8.42 0.00 0.00 0.00 8.15 5.14 4.35 17 ER7a ExonRegion 0 27.42 48.84 24.17 47.14 80.80 119.36 57.75 60.52 62.34 75.63 210.63 67.04 162.16 154.73 91.39 118.21 124.53 68.00 47.44 63.73 45.94 77.09 63.09 18 E7a_E8a KnownJunction 1 16.23 89.33 36.31 59.40 83.28 150.94 74.46 71.10 70.22 73.68 326.98 31.81 156.81 134.50 91.72 129.37 105.75 69.06 70.31 48.45 42.01 84.50 82.89 19 E7a_E9a NovelJunction 0 0.00 2.76 1.83 0.00 3.40 5.45 6.05 3.45 1.24 0.00 2.32 6.30 0.00 13.95 4.45 4.10 3.93 13.43 0.00 3.20 6.12 5.08 4.35 20 E8_Aa NovelBoundary 0 6.37 0.00 7.98 12.29 3.40 0.00 18.95 2.55 2.81 6.42 4.79 6.30 29.06 0.00 4.45 11.71 12.16 0.00 4.80 5.69 2.97 17.82 0.00 21 ER8a ExonRegion 0 11.65 62.42 37.58 52.97 69.90 95.92 51.81 54.66 52.74 65.27 210.13 58.28 152.98 151.82 81.82 97.23 133.18 61.70 54.40 68.95 55.84 64.48 58.63 22 E8_Da NovelBoundary 0 6.89 9.54 7.66 12.25 14.86 11.36 11.00 2.55 12.41 12.81 5.00 0.00 27.27 2.47 22.50 36.74 17.77 5.72 4.52 7.80 8.09 2.33 4.35 23 E8a_E9a KnownJunction 1 23.12 65.45 29.06 34.83 114.35 51.56 34.67 42.10 34.52 73.57 158.25 30.01 123.21 167.23 51.18 97.75 85.09 38.63 23.72 44.81 22.36 41.88 38.07 24 I8 Intron 0 7.33 7.43 3.29 8.33 11.01 8.72 12.80 6.73 6.24 6.12 10.12 10.36 28.90 6.00 7.57 12.62 15.42 9.27 4.67 8.94 8.75 7.52 10.49 25 I8_SR1 SilentIntronRegion 0 8.19 7.16 3.40 9.28 9.11 7.90 14.65 4.72 5.09 6.42 9.68 12.56 34.52 6.00 8.52 10.81 23.06 9.47 5.38 9.17 7.82 4.61 8.46 26 I8_AR1 ActiveIntronRegion 1 14.07 12.34 6.86 8.51 12.37 7.95 19.51 8.19 5.58 6.17 6.42 14.68 56.52 4.73 13.36 9.45 12.40 3.06 3.22 9.53 4.14 5.12 8.91 27 I8_SR2 SilentIntronRegion 0 4.17 5.37 2.05 5.53 10.49 4.91 9.41 6.04 5.41 4.39 7.37 10.07 31.88 5.15 5.31 12.37 13.51 9.43 4.52 9.28 7.36 5.87 9.62 28 I8_AR3 ActiveIntronRegion 0 3.94 5.61 4.00 4.90 8.54 6.44 11.58 4.65 5.34 4.88 7.39 3.73 9.63 7.16 5.72 15.23 13.20 17.65 6.07 12.03 12.73 3.05 13.14 29 I8_SR3 SilentIntronRegion 0 8.81 7.18 3.40 7.86 10.38 8.35 14.58 7.99 8.05 6.24 12.56 11.84 28.14 7.00 8.86 17.52 15.54 14.18 3.80 10.45 12.56 8.64 13.66 30 I8_AR4 ActiveIntronRegion 0 11.20 8.45 4.35 12.31 11.56 9.27 11.99 10.78 7.86 6.38 15.10 10.53 32.42 5.75 8.71 13.68 19.94 6.17 4.26 9.70 7.98 12.35 13.90 31 I8_AR5 ActiveIntronRegion 1 16.74 22.74 3.45 12.76 8.76 0.00 13.24 13.36 5.05 7.61 16.69 9.45 38.37 6.50 8.70 6.48 24.91 11.59 8.40 11.99 10.42 17.80 13.62 32 I8_AR6 ActiveIntronRegion 1 9.88 17.96 3.68 14.08 6.24 0.92 19.42 15.56 4.32 8.03 21.26 17.32 39.87 7.04 8.70 2.97 23.11 9.24 12.74 15.25 13.59 19.79 18.60 33 I8_SR4 SilentIntronRegion 0 7.60 8.30 3.78 15.09 12.20 12.24 13.81 10.63 6.16 7.53 16.61 14.88 43.38 8.90 9.17 14.80 19.08 12.57 7.26 18.80 14.64 12.79 16.71 34 I8_AR7 ActiveIntronRegion 0 9.13 8.35 3.63 7.67 12.48 7.05 11.20 4.75 5.13 7.99 10.06 6.22 21.01 5.23 8.11 12.30 13.40 8.51 0.75 5.83 12.62 8.55 10.96 35 I8_AR10 ActiveIntronRegion 0 2.32 1.91 4.29 5.72 7.53 10.33 12.84 2.42 6.62 4.55 9.68 2.91 10.44 6.53 6.27 13.02 11.88 7.62 2.49 5.66 8.94 7.50 11.94 36 I8_AR11 ActiveIntronRegion 0 4.34 3.83 1.76 7.22 12.10 6.84 10.94 4.80 3.68 4.87 3.81 5.61 19.52 2.92 2.85 6.04 2.92 0.62 3.76 5.53 2.27 6.62 6.47 37 I8_AR12 ActiveIntronRegion 0 11.95 17.94 5.37 16.44 17.93 24.56 18.41 13.55 9.22 11.75 19.38 17.95 29.31 8.75 9.53 16.47 15.23 9.02 9.32 7.25 11.78 16.50 11.60 38 E9_Aa NovelBoundary 0 21.04 9.21 10.02 18.55 22.84 23.45 27.07 15.85 9.90 19.42 19.95 17.26 20.13 9.54 8.90 19.31 4.11 13.64 8.47 5.43 8.90 15.80 7.94 39 ER9a ExonRegion 0 33.31 93.73 40.83 53.80 75.80 121.03 59.03 73.14 51.81 83.18 264.68 80.64 134.83 167.88 109.35 112.00 159.28 86.36 46.86 61.34 72.56 80.63 62.52 40 E9a_E10a KnownJunction 0 74.53 166.55 51.59 74.68 73.17 148.61 78.65 93.94 46.87 100.49 276.49 53.72 129.86 174.53 134.50 99.03 196.82 116.98 79.63 68.01 59.92 118.24 75.89 41 ER10a ExonRegion 0 49.38 78.03 51.85 53.40 74.08 134.64 46.77 64.09 49.47 82.79 269.92 63.40 138.66 169.36 96.50 108.95 175.99 91.29 51.34 68.34 62.98 79.83 60.74 42 E10_Da NovelBoundary 0 3.04 9.21 0.00 9.39 0.00 2.50 4.50 7.80 7.00 13.32 12.63 6.00 13.64 15.89 4.45 26.15 24.40 22.09 4.14 5.75 14.52 5.57 7.85 43 E10a_E11a KnownJunction 1 37.41 72.16 72.35 49.84 75.64 106.02 50.26 74.30 83.45 92.03 227.79 73.52 180.67 233.27 80.97 111.94 162.23 62.47 37.84 64.30 62.40 72.81 69.91 44 I10 Intron 0 4.29 2.26 2.94 6.32 6.24 3.67 5.66 8.30 5.16 5.98 11.16 5.48 15.50 6.91 3.74 11.55 12.28 17.21 5.39 6.85 9.42 5.73 10.44 45 I10_AR1 ActiveIntronRegion 0 2.61 1.79 1.13 5.67 7.24 7.16 8.90 3.93 3.49 4.66 9.78 9.42 6.35 8.15 4.66 9.91 5.18 15.94 6.25 10.93 1.99 2.70 7.54 46 I10_AR2 ActiveIntronRegion 0 4.97 2.07 4.92 10.06 3.34 5.40 5.28 11.14 6.96 7.96 14.17 10.88 20.78 8.76 5.62 23.26 23.46 20.40 11.77 9.92 12.84 4.27 12.75 47 I10_SR2 SilentIntronRegion 0 4.23 2.33 2.60 5.57 6.86 3.19 5.67 7.89 4.86 5.63 10.61 4.17 14.77 6.52 3.32 9.15 10.20 16.66 4.02 6.09 9.00 6.19 10.11 48 E11_Aa NovelBoundary 0 9.71 12.37 5.23 2.93 3.74 4.49 6.01 14.29 4.43 7.60 14.00 0.00 0.00 9.54 6.30 10.77 23.09 11.90 16.66 8.12 19.58 16.04 3.67 49 ER11a ExonRegion 0 40.28 55.62 63.09 72.07 64.59 117.61 49.39 78.23 73.45 90.05 263.15 81.41 166.50 179.00 119.70 140.55 155.22 106.62 52.96 58.71 78.95 84.84 65.59 50 E11_Da NovelBoundary 0 3.78 3.35 1.21 11.39 4.07 2.61 1.77 16.02 5.90 1.42 8.84 5.70 0.00 2.47 0.00 4.02 8.23 27.15 0.00 12.72 18.29 0.00 0.00 51 E11a_E12a KnownJunction 0 53.94 67.49 55.17 74.22 70.12 141.85 57.72 76.03 81.36 110.38 237.01 86.88 132.13 160.40 153.90 182.77 172.23 59.94 87.91 77.08 76.30 90.14 65.13 52 I11 Intron 0 3.47 5.93 1.66 6.29 4.87 5.01 4.58 5.16 5.03 4.99 7.04 1.95 1.41 2.19 2.92 4.33 9.02 18.57 3.48 3.10 15.65 2.28 3.74 53 I11_SR1 SilentIntronRegion 0 3.49 5.97 1.67 6.33 4.90 5.05 4.61 5.20 5.06 5.02 7.09 1.96 1.42 2.21 2.94 4.36 9.08 18.70 3.51 3.12 15.76 2.29 3.76 54 E12_Aa NovelBoundary 0 3.26 3.35 0.00 11.32 0.00 0.00 11.66 20.33 8.71 0.00 10.16 0.00 0.00 0.00 9.64 11.96 8.88 23.63 4.80 5.05 2.84 0.00 0.00 55 ER12a ExonRegion 0 50.16 50.23 62.67 70.32 71.94 135.15 41.06 79.22 83.05 82.05 307.79 96.87 177.49 175.35 114.54 142.69 151.53 102.36 70.64 68.02 88.45 90.83 69.59 56 E12a_E13a KnownJunction 0 93.94 65.25 62.33 102.58 82.17 164.39 50.26 70.03 83.48 93.48 282.91 82.23 254.53 204.66 189.38 179.70 185.79 138.12 89.13 93.38 102.92 144.33 107.81 57 I12_AR2 ActiveIntronRegion 0 10.63 7.86 8.11 7.74 9.94 3.68 10.15 6.10 7.23 6.12 7.17 7.52 13.56 3.37 6.36 2.26 6.43 4.54 2.95 5.96 2.28 6.93 7.39 58 E13_Aa NovelBoundary 0 6.59 8.35 6.83 7.76 24.28 0.00 0.00 2.55 5.67 2.71 17.43 0.00 0.00 0.00 0.00 4.36 4.77 6.09 3.48 2.62 5.00 2.57 3.59 59 ER13a ExonRegion 0 51.18 43.50 58.07 50.37 67.96 89.39 36.71 57.55 54.34 59.42 169.69 38.07 67.21 121.22 114.55 92.83 101.41 49.58 42.24 39.69 50.41 60.23 55.65