Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 HCG18 Gene 0 52.20 94.30 55.77 68.59 63.09 49.79 49.74 42.65 44.78 83.91 69.55 66.11 63.76 70.32 44.57 67.06 53.47 97.53 86.57 128.75 45.46 49.54 50.22 2 426882 Transcript 0 0.85 0.00 0.61 0.68 0.27 0.18 1.32 0.88 0.18 1.52 7.28 0.36 3.12 5.69 4.37 1.40 2.78 0.83 0.32 1.46 4.16 1.63 2.06 3 413358 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 412685 Transcript 1 20.45 30.06 1.83 6.59 30.14 28.85 11.22 4.56 2.60 26.06 48.22 6.30 0.00 88.94 39.43 45.63 38.80 23.21 74.54 54.33 8.09 10.72 15.11 5 438412 Transcript 1 26.03 182.08 24.19 56.06 55.95 22.99 34.64 37.28 55.27 107.08 38.15 125.19 124.77 42.76 15.40 29.76 22.69 24.27 38.48 139.86 18.33 46.50 20.50 6 454269 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 454129 Transcript 0 0.00 5.72 15.23 23.64 3.90 10.11 8.35 0.00 5.67 11.87 7.53 0.00 0.00 2.47 5.19 6.92 0.00 28.35 3.67 7.93 5.68 2.82 0.00 8 449544 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 444126 Transcript 0 0.00 0.00 8.93 0.00 0.00 4.20 1.94 1.64 5.01 1.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.13 4.33 8.31 0.00 2.76 4.01 10 ER1a ExonRegion 0 1.70 0.00 0.00 0.00 0.54 0.37 0.00 0.03 0.37 0.74 12.62 0.72 1.55 8.14 2.95 2.80 5.56 1.66 0.64 1.03 3.66 1.18 4.13 11 E1_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.55 0.00 0.00 2.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 ER1b ExonRegion 0 0.00 0.00 1.06 1.11 0.00 0.00 0.00 1.73 0.00 1.43 4.96 0.00 2.66 2.02 2.59 1.29 2.77 0.00 0.00 4.20 5.48 0.90 0.00 13 E1_Da KnownBoundary 0 0.00 0.00 1.63 1.53 0.00 0.00 0.00 4.35 1.79 6.07 0.00 0.00 0.00 0.00 0.00 4.36 0.00 7.01 0.00 0.00 5.07 0.00 0.00 14 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 E1_Ac KnownBoundary 0 0.00 0.00 0.00 2.06 0.00 0.00 0.00 0.00 1.65 1.67 8.05 0.00 0.00 0.00 0.00 0.00 0.00 2.24 0.00 0.00 0.00 0.00 0.00 16 ER1c ExonRegion 0 0.00 0.00 1.23 1.36 0.00 0.00 2.65 1.73 0.00 2.29 1.93 0.00 4.69 3.25 5.80 0.00 0.00 0.00 0.00 1.89 4.65 2.08 0.00 17 ER1d ExonRegion 0 8.18 12.73 5.83 5.60 6.56 19.08 7.64 4.96 4.57 16.98 16.82 3.51 4.36 20.90 11.87 13.90 13.09 21.06 16.85 22.79 10.69 6.12 12.99 18 E1_Ad KnownBoundary 0 3.48 19.21 3.13 3.20 4.33 7.33 3.71 6.20 4.92 21.06 23.80 10.80 8.28 7.95 5.32 16.41 4.39 25.33 24.94 38.09 11.37 2.69 7.68 19 E1_Ae KnownBoundary 0 0.00 0.00 1.80 3.73 0.00 0.00 0.00 4.68 3.56 6.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.19 0.00 0.00 0.00 0.00 0.00 20 E1_Af NovelBoundary 0 17.56 38.35 11.24 21.94 35.65 34.98 17.22 7.97 8.74 25.60 52.17 6.90 6.49 61.98 31.77 58.19 30.11 32.96 33.70 73.89 25.76 8.45 27.15 21 ER1e ExonRegion 0 19.05 54.91 11.03 20.44 29.43 44.01 10.59 20.74 19.76 58.49 83.11 25.98 32.83 90.95 49.32 92.14 56.12 94.24 98.75 108.51 50.69 22.92 35.24 22 ER1f ExonRegion 0 24.76 71.79 15.81 27.12 34.78 54.83 13.11 23.85 22.73 63.31 81.38 24.25 33.30 96.96 57.73 90.95 68.33 108.65 123.59 135.11 54.87 25.21 41.11 23 E1_Db KnownBoundary 0 7.11 48.41 3.49 2.06 15.70 13.51 6.58 0.00 1.36 0.00 5.05 0.00 0.00 7.42 10.14 0.00 9.16 2.03 36.14 25.25 3.15 0.00 8.19 24 E1b_E1g NovelJunction 0 0.00 0.00 12.80 20.11 0.00 0.00 0.00 9.94 1.79 14.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.13 0.00 0.00 0.00 0.00 0.00 25 E1b_E2a KnownJunction 0 20.45 30.06 1.83 6.59 30.14 28.85 11.22 4.56 2.60 26.06 48.22 6.30 0.00 88.94 39.43 45.63 38.80 23.21 74.54 54.33 8.09 10.72 15.11 26 E1b_E3a KnownJunction 1 55.64 54.86 18.83 25.30 63.50 134.24 41.73 29.00 32.49 64.23 85.44 6.30 26.95 146.63 87.89 82.12 65.08 109.56 228.81 130.65 95.57 40.97 72.30 27 E1_Ag KnownBoundary 0 3.78 20.13 1.83 2.06 12.99 8.46 6.76 5.09 0.00 1.67 2.68 0.00 0.00 3.00 0.00 0.00 0.00 9.37 19.20 29.21 0.00 0.00 4.35 28 ER1g ExonRegion 1 57.05 114.99 28.91 51.36 105.81 138.79 54.52 33.31 41.10 97.28 114.30 24.60 29.42 180.13 95.61 125.77 105.18 143.87 241.36 209.38 103.87 42.05 81.43 29 E1_Ah KnownBoundary 0 47.27 58.34 43.05 68.62 76.40 106.36 69.16 20.25 37.73 52.76 32.96 19.06 6.82 26.13 11.25 46.48 13.93 68.73 80.76 120.36 36.39 30.31 54.38 30 ER1h ExonRegion 0 29.03 75.82 31.86 55.10 76.45 77.02 54.66 16.30 26.82 41.78 22.64 15.46 1.34 40.60 39.37 33.12 18.86 53.85 90.56 120.36 39.04 17.26 38.18 31 ER1i ExonRegion 0 30.12 78.37 37.61 57.24 79.24 85.48 56.12 19.15 28.88 43.23 31.82 18.98 4.69 43.35 35.26 38.41 20.57 58.84 92.13 132.24 42.21 20.84 46.76 32 ER1j ExonRegion 0 12.99 25.49 55.42 60.88 25.63 22.38 21.28 18.68 23.32 42.88 38.61 15.43 10.87 28.90 30.50 29.56 20.45 63.71 52.43 104.42 19.27 15.37 34.60 33 E1_Dc KnownBoundary 1 6.30 33.74 32.32 28.73 11.80 10.96 9.32 19.10 21.79 22.62 49.64 6.15 6.17 12.07 30.04 43.41 0.00 35.77 30.49 98.62 14.09 13.72 8.02 34 E1c_E3a KnownJunction 0 3.33 3.35 6.18 18.38 4.24 9.54 0.00 9.12 10.85 17.86 11.32 6.30 6.82 4.94 8.90 12.65 4.21 47.22 50.45 52.28 2.35 23.70 23.47 35 ER1k ExonRegion 0 3.88 20.38 38.50 24.74 11.59 14.32 14.63 8.36 12.96 16.92 22.96 1.28 7.83 11.91 11.24 15.51 11.16 37.89 16.64 38.48 7.05 5.12 8.91 36 E1d_E2a KnownJunction 0 0.00 0.00 8.93 0.00 0.00 4.20 1.94 1.64 5.01 1.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.13 4.33 8.31 0.00 2.76 4.01 37 E1d_E3a KnownJunction 0 0.00 5.72 15.23 23.64 3.90 10.11 8.35 0.00 5.67 11.87 7.53 0.00 0.00 2.47 5.19 6.92 0.00 28.35 3.67 7.93 5.68 2.82 0.00 38 Ix Intron 0 8.25 13.29 6.65 9.27 12.10 3.28 21.70 10.02 13.01 14.96 7.24 28.18 30.80 6.56 7.54 11.59 16.76 7.80 8.78 36.74 5.26 3.59 10.31 39 Ix_AR8 ActiveIntronRegion 0 3.12 1.36 0.95 2.54 0.00 5.40 6.33 2.69 2.44 2.20 6.98 3.25 9.38 1.58 11.28 15.69 9.35 4.21 7.34 9.99 4.35 0.17 2.77 40 Ix_SR5 SilentIntronRegion 0 10.28 4.87 1.71 2.92 0.00 10.54 17.83 7.28 5.69 4.75 11.94 6.18 21.11 10.32 19.89 22.29 16.50 16.50 27.99 19.83 7.87 2.08 8.18 41 Ix_AR7 ActiveIntronRegion 0 13.55 14.84 10.04 14.40 16.53 4.00 23.81 13.03 13.08 14.86 9.92 10.61 27.24 5.45 18.43 16.42 19.11 16.30 16.32 38.19 8.01 2.51 14.02 42 Ix_SR4 SilentIntronRegion 0 10.94 15.57 5.23 8.46 13.72 3.49 25.66 8.10 8.54 10.56 5.33 23.18 27.43 4.91 8.07 6.85 11.82 2.96 5.04 29.17 3.27 2.14 6.97 43 Ix_AR6 ActiveIntronRegion 0 6.07 8.86 6.41 8.42 14.40 3.75 24.05 9.08 19.93 20.71 7.94 36.70 28.71 7.79 5.71 12.44 18.11 10.13 6.96 37.45 6.09 2.37 13.13 44 Ix_SR3 SilentIntronRegion 0 6.20 10.09 5.37 12.61 9.56 1.61 17.07 10.48 16.85 20.20 4.45 41.18 35.56 6.97 3.38 10.01 12.41 4.41 4.11 42.21 2.51 3.54 6.50 45 Ix_AR5 ActiveIntronRegion 0 9.00 19.45 8.12 13.80 12.38 0.92 34.09 14.91 26.94 19.86 2.66 39.78 49.54 9.64 6.53 12.45 6.81 12.47 5.57 51.60 2.62 6.64 13.03 46 Ix_AR4 ActiveIntronRegion 0 4.14 11.44 10.12 10.25 10.29 2.87 23.50 10.22 16.61 19.46 9.26 42.24 43.49 10.80 7.88 17.32 28.52 10.07 14.68 45.58 6.66 8.08 14.34 47 Ix_AR3 ActiveIntronRegion 0 1.59 2.39 4.79 0.76 0.00 1.38 1.21 4.60 5.92 6.92 3.92 13.50 0.83 1.00 2.18 15.04 13.49 9.40 5.71 20.49 4.96 1.44 6.00 48 Ix_AR2 ActiveIntronRegion 0 7.78 21.59 11.00 13.63 11.06 3.51 19.74 19.54 18.77 25.09 9.24 33.96 40.09 9.08 6.38 24.30 28.71 17.78 18.33 61.99 10.14 5.47 18.47 49 Ix_AR1 ActiveIntronRegion 0 12.70 11.12 8.65 8.90 5.82 7.77 22.90 11.49 25.21 28.61 15.69 29.80 21.52 6.59 7.51 6.82 33.40 12.50 19.11 53.07 2.20 5.02 29.37 50 Ix_SR1 SilentIntronRegion 0 4.59 11.08 5.27 4.55 9.69 3.10 12.96 9.98 12.54 11.53 10.58 28.05 33.13 7.28 3.59 10.28 17.59 9.13 9.27 36.82 7.62 5.83 11.15 51 E2_Aa NovelBoundary 0 13.93 9.60 12.03 10.72 24.96 5.51 28.26 12.49 13.22 19.50 12.69 31.96 28.08 4.59 4.45 16.24 26.46 2.57 14.12 27.80 5.81 6.06 15.11 52 ER2a ExonRegion 0 14.91 24.40 20.26 15.82 22.11 22.73 22.19 18.91 25.75 38.64 62.94 31.88 33.53 51.08 33.16 43.92 43.44 46.08 53.03 78.99 25.17 15.09 22.94 53 E2_Da NovelBoundary 0 10.15 20.39 14.49 8.42 16.64 0.00 34.71 24.15 18.58 20.28 9.79 23.86 27.27 7.06 23.12 23.07 27.21 2.57 4.71 52.80 5.44 2.88 29.11 54 E2a_E3a KnownJunction 0 6.22 16.05 17.36 13.75 0.00 5.34 10.33 2.42 8.62 37.20 52.80 36.16 34.90 44.85 19.66 59.98 39.46 54.72 39.91 48.45 11.31 26.21 29.79 55 Ix Intron 0 18.95 25.95 14.40 21.49 22.23 10.20 27.44 15.88 17.09 20.85 12.71 28.49 31.40 13.31 11.27 21.98 24.34 17.43 18.36 43.45 11.23 6.45 14.53 56 Ix_SR4 SilentIntronRegion 0 12.22 16.95 9.11 14.14 17.23 5.56 24.18 15.96 16.55 25.21 7.83 26.74 37.39 10.06 8.26 14.92 22.04 10.47 13.24 37.80 6.91 3.40 9.35 57 Ix_AR3 ActiveIntronRegion 0 11.59 25.95 6.83 13.97 27.87 4.90 22.06 13.61 7.38 16.11 4.58 9.41 15.22 6.90 6.24 9.46 13.42 3.60 10.61 23.46 2.45 2.34 8.11 58 Ix_SR3 SilentIntronRegion 0 10.56 8.70 7.26 11.92 8.94 4.15 10.56 9.39 9.85 17.32 5.20 4.44 10.88 5.52 11.69 14.66 14.09 6.67 11.67 27.59 3.40 4.92 11.95 59 Ix_AR2 ActiveIntronRegion 0 41.39 51.44 35.34 34.05 36.24 9.02 33.03 38.81 31.33 46.09 13.69 57.21 75.98 17.25 23.86 42.89 43.45 32.90 42.73 76.71 18.74 11.16 27.93 60 Ix_SR2 SilentIntronRegion 0 29.96 33.66 17.47 22.85 27.09 10.35 29.38 17.07 18.80 20.84 13.37 30.23 36.76 12.22 14.19 20.93 24.58 13.71 17.02 44.38 11.54 5.48 13.05 61 Ix_AR1 ActiveIntronRegion 0 16.37 25.66 16.21 20.22 23.91 13.87 29.44 12.54 17.73 17.53 14.87 30.13 21.13 15.47 10.88 24.02 25.33 19.80 15.51 41.87 13.42 6.62 15.38 62 Ix_SR1 SilentIntronRegion 0 15.26 22.58 11.51 25.50 17.79 11.46 27.70 14.02 15.15 16.98 15.23 26.50 28.47 15.10 9.66 23.48 23.51 22.02 21.42 45.42 12.37 8.56 16.28 63 E3_Aa NovelBoundary 0 13.34 17.76 20.40 39.46 11.46 18.46 31.49 4.56 7.90 21.44 15.37 19.06 12.99 22.78 17.80 26.49 13.18 42.45 11.95 35.28 14.21 16.84 23.30 64 ER3a ExonRegion 0 40.61 67.59 64.92 75.18 78.35 82.24 56.91 45.53 52.60 126.68 117.74 77.81 65.04 125.99 92.89 112.27 93.36 141.89 201.61 175.39 115.49 100.52 95.77 65 E3_Da NovelBoundary 1 13.26 24.47 19.28 19.74 70.12 11.13 20.93 21.19 17.16 17.35 14.95 50.57 13.64 33.73 18.67 34.52 36.75 40.62 38.50 89.16 8.15 12.37 14.68 66 E3a_E4a KnownJunction 0 20.30 50.39 55.65 88.17 63.50 42.59 38.95 27.60 49.54 135.95 127.40 48.92 38.80 71.52 38.07 74.25 81.44 87.09 151.53 154.87 113.30 68.34 42.94 67 E3a_E4b NovelJunction 0 0.00 6.58 1.83 5.33 23.94 14.71 3.89 4.97 1.45 6.29 0.00 0.00 0.00 2.41 4.45 3.93 0.00 6.51 0.00 10.67 0.00 0.00 0.00 68 Ix Intron 0 15.79 37.01 17.03 25.99 31.33 20.76 29.72 15.74 17.76 26.16 21.38 38.79 35.76 26.94 19.55 30.97 24.63 26.66 32.57 66.50 8.36 8.84 17.19 69 Ix_SR1 SilentIntronRegion 0 13.72 36.22 13.53 19.90 27.56 20.23 29.57 11.85 17.19 20.44 17.65 32.37 25.45 21.69 17.35 26.59 21.45 24.81 31.36 52.07 8.32 6.68 16.84 70 Ix_AR1 ActiveIntronRegion 0 20.13 38.80 24.33 38.70 39.21 21.93 30.14 23.86 19.00 38.08 29.19 52.22 57.23 37.91 24.17 40.14 31.28 30.60 35.21 96.64 8.45 13.36 18.00 71 E4_Aa NovelBoundary 0 30.38 66.04 63.21 62.03 46.60 20.67 36.66 59.15 34.11 61.97 42.12 41.71 60.39 42.26 37.70 33.92 32.91 28.06 47.15 121.12 12.73 8.63 18.01 72 ER4a ExonRegion 0 84.16 99.51 111.96 124.78 99.30 90.14 85.25 70.26 84.33 150.77 148.52 141.29 109.23 158.15 93.26 148.25 120.43 257.76 186.63 242.41 123.17 98.90 113.31 73 E4_Da KnownBoundary 0 42.45 58.67 30.57 36.56 28.18 51.22 42.93 33.31 28.21 77.09 65.17 12.60 26.62 72.81 34.24 49.30 53.39 114.62 50.45 125.09 64.50 35.76 50.79 74 E4a_E4b KnownJunction 0 70.53 53.15 46.69 51.08 119.10 67.01 99.01 32.74 19.73 67.99 55.54 54.17 13.47 72.58 38.82 56.74 34.88 103.92 69.27 81.94 54.24 38.27 28.43 75 ER4b ExonRegion 0 45.10 59.34 32.62 39.53 45.60 38.90 38.50 31.05 30.77 55.01 50.70 40.19 48.70 46.91 27.57 53.28 40.86 89.68 67.00 104.24 31.53 30.86 46.33 76 E4_Ab KnownBoundary 0 74.53 69.92 4.29 3.70 119.10 136.23 77.33 1.77 2.72 6.80 2.58 5.40 13.47 2.47 5.19 19.31 4.58 12.73 0.00 9.08 0.00 0.00 8.28 77 ER4c ExonRegion 0 91.49 189.37 101.41 130.33 114.43 78.02 85.31 76.76 75.41 143.57 102.90 112.84 104.70 108.04 72.91 99.08 78.36 120.16 126.02 188.96 62.98 88.12 64.67 78 E4_Db KnownBoundary 1 40.45 393.02 36.63 82.54 75.72 30.49 76.09 50.69 71.58 125.82 52.91 142.40 144.47 34.02 4.45 36.32 47.50 10.65 43.48 161.58 18.97 50.70 18.87 79 ER4d ExonRegion 1 26.03 182.08 24.19 56.06 55.95 22.99 34.64 37.28 55.27 107.08 38.15 125.19 124.77 42.76 15.40 29.76 22.69 24.27 38.48 139.86 18.33 46.50 20.50