Order	SeqName	SeqType	IsAE	NBL01_MYCN	NBL05_MYCN	NBL09_MYCN	NBL10_MYCN	NBL02	NBL03	NBL04	NBL06	NBL07	NBL08	NBL11_Rel2	NBL11_Rem1	NBL11_Rel1	NBL12_Rel_Left	NBL12_Rel_Right	NBL13_Rel_Left	NBL13_Rel_Right	NBL14_MYCN_Met	NBL14_MYCN_Pri	NBL15_MYCN_Rel1	SKP01	SKP02	SKP03
1	HLA-A	Gene	0	1981.91	39.84	615.94	310.39	568.17	454.93	110.73	758.29	768.05	185.66	1038.29	818.25	648.43	2916.81	4055.62	3272.82	2050.61	13.38	36.87	104.23	1044.05	889.54	489.06
2	396634	Transcript	0	0.44	0.00	0.00	0.00	0.26	0.00	0.56	0.00	0.38	0.00	0.38	0.69	1.19	3.36	0.60	0.58	0.00	0.00	0.00	0.00	1.21	3.57	0.57
3	376806	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.04	0.00	0.00	0.00	0.00	0.00	0.00	0.01	0.00	0.00
4	355767	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	376809	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
6	496081	Transcript	0	343.99	2.37	49.88	40.86	60.09	113.71	11.09	58.45	57.76	9.08	52.77	51.36	22.53	277.19	214.06	170.89	114.75	0.20	1.77	5.47	33.81	88.66	41.05
7	376802	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	495183	Transcript	0	17.86	0.00	6.59	2.03	3.57	0.00	1.90	7.27	8.13	1.53	2.68	0.00	0.00	15.19	14.96	28.20	26.93	0.00	0.00	0.00	6.18	6.25	8.02
9	461903	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
10	479320	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
11	ER1a	ExonRegion	0	1.73	0.00	0.00	0.00	0.00	0.00	2.25	0.00	0.12	0.00	0.00	0.00	3.20	2.27	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.30	0.00
12	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	9.25	0.00
13	ER2a	ExonRegion	0	0.03	0.00	0.00	0.00	1.04	0.00	0.00	0.00	1.38	0.00	1.51	2.78	1.54	3.58	2.39	2.31	0.00	0.00	0.00	0.00	2.42	1.73	2.29
14	E2a_E3b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.59	0.00	0.00	0.00	0.00	0.00	0.00	2.41	0.00	0.00
15	ER3a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.04	0.00	0.00	0.00	0.00	0.00	0.00	0.01	0.00	0.00
16	E3_Ab	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.48	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
17	ER3b	ExonRegion	0	0.22	0.00	0.00	0.20	0.00	0.00	0.04	0.00	0.05	0.00	1.53	1.87	0.00	4.44	0.00	1.93	2.38	0.00	0.00	0.00	1.64	3.29	0.00
18	E3_Ac	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.30	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
19	E3_Ad	KnownBoundary	0	12.89	0.00	0.00	0.00	0.00	8.06	1.81	0.00	1.33	0.00	7.53	6.15	0.00	0.00	0.00	4.36	15.99	0.00	0.00	0.00	33.11	3.12	0.00
20	ER3c	ExonRegion	0	5.64	0.00	0.00	1.36	0.00	0.00	1.32	0.00	1.24	0.00	7.52	0.00	0.00	4.87	0.00	2.97	13.94	0.00	0.00	0.00	33.79	0.00	0.00
21	ER3d	ExonRegion	0	74.13	3.69	0.26	1.36	4.72	12.06	9.06	1.23	1.27	0.00	9.05	1.25	3.83	2.99	2.21	3.05	16.33	0.00	0.00	0.00	49.41	0.00	0.08
22	E3_Ae	KnownBoundary	0	36.97	6.18	1.71	1.53	7.64	13.46	8.66	0.00	11.23	1.58	4.53	0.00	0.00	0.00	0.00	14.36	11.87	0.00	0.00	0.00	31.88	0.00	0.00
23	E3_Af	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
24	E3_Ag	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
25	E3_Ah	KnownBoundary	0	256.49	8.75	0.00	7.59	2.97	74.11	3.80	13.64	10.04	1.02	7.05	10.80	0.00	10.83	23.61	24.61	9.07	0.00	0.00	0.00	2.66	9.74	9.73
26	ER3e	ExonRegion	0	2385.31	52.87	2.45	1.36	184.63	627.16	206.54	3.46	2.47	0.00	9.66	8.66	9.38	12.99	40.62	23.78	16.50	0.00	0.00	0.00	39.67	0.00	2.94
27	ER3f	ExonRegion	0	2951.84	61.01	2.45	1.36	193.55	721.29	230.37	5.19	3.29	0.00	9.66	8.66	9.38	14.08	46.42	24.77	19.81	0.00	0.00	0.00	35.26	0.00	2.94
28	ER3g	ExonRegion	0	3628.77	65.07	24.51	17.04	204.69	833.46	246.92	45.80	54.35	9.18	8.70	12.99	9.38	16.24	56.57	26.75	19.81	1.85	0.00	0.00	30.85	0.00	2.94
29	ER3h	ExonRegion	0	3465.77	53.75	237.79	129.78	167.23	867.03	204.35	343.94	361.22	124.93	62.39	103.79	66.38	206.83	242.74	199.59	144.37	13.45	2.26	6.29	94.12	42.60	47.72
30	E3a_E4a	KnownJunction	1	352.66	11.84	167.50	70.79	41.34	215.05	10.73	179.99	191.03	88.08	190.36	356.37	167.03	632.29	773.10	477.14	321.74	6.09	0.00	20.84	198.00	118.36	122.33
31	ER4a	ExonRegion	1	270.03	4.71	143.74	49.66	26.02	114.37	14.58	165.90	199.72	64.04	59.27	175.70	153.81	487.58	660.06	472.23	159.49	2.39	1.50	12.83	122.62	127.84	54.39
32	E4_Da	KnownBoundary	1	1374.17	17.96	1216.87	683.03	150.25	277.79	46.11	1438.91	1520.59	527.25	4516.09	487.06	592.49	3010.96	3661.30	2747.74	4916.87	18.86	4.05	70.44	2905.88	1031.05	478.37
33	E4a_E4c	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
34	ER4b	ExonRegion	0	234.80	26.33	338.92	194.73	206.51	266.81	92.25	549.59	562.27	199.09	354.16	252.12	284.59	1636.70	2004.70	1576.76	1553.44	3.73	6.76	51.30	597.19	550.00	141.88
35	E4_Db	KnownBoundary	0	7.19	0.00	0.00	9.56	0.00	0.00	0.00	25.59	34.95	0.00	4.84	0.00	0.00	2.12	0.00	61.69	27.77	0.00	0.00	0.00	0.00	2.76	0.00
36	E4b_E4b	KnownJunction	0	358.29	73.47	978.59	431.35	1996.10	2463.64	659.31	953.33	1258.23	378.48	1438.52	534.32	461.17	3765.45	3878.62	3385.27	3597.19	25.49	31.53	152.06	1995.47	1190.44	407.52
37	ER4c	ExonRegion	0	410.91	2.26	30.93	18.87	25.15	43.07	4.27	48.13	49.10	8.89	110.01	38.54	23.51	313.92	166.94	157.19	111.08	1.19	1.43	6.76	28.39	41.27	32.29
38	E4_Ab	KnownBoundary	0	146.54	3.16	3.67	5.79	4.07	39.30	2.25	4.23	17.71	1.67	57.38	19.81	6.49	64.69	34.74	38.88	42.45	0.00	0.00	3.26	3.03	9.25	8.54
39	E4_Ac	KnownBoundary	1	681.31	33.61	199.52	299.70	41.85	986.82	74.19	580.13	425.86	204.77	603.84	193.26	340.72	575.49	420.30	1446.12	1375.03	0.00	0.00	46.28	8.83	630.71	84.34
40	ER4d	ExonRegion	0	466.63	47.13	596.32	320.36	467.47	1560.78	269.23	818.27	915.66	331.12	877.88	581.68	648.33	3161.21	3867.54	2370.71	2493.15	3.91	7.68	58.45	614.71	1046.78	188.12
41	ER4e	ExonRegion	1	259.61	51.45	334.39	189.54	10.40	625.19	73.44	680.49	679.55	253.21	439.86	815.25	1038.71	1450.52	1627.99	2622.99	1922.18	2.16	0.00	53.87	4.16	448.31	55.85
42	E4_Dc	KnownBoundary	0	622.41	87.16	786.13	164.11	167.66	536.91	62.84	1024.39	1208.90	266.95	797.57	423.74	586.97	1281.31	975.84	4533.08	2602.05	16.25	14.12	179.16	503.11	0.00	473.94
43	E4c_E4d	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
44	ER4f	ExonRegion	0	1601.21	60.08	336.47	188.29	118.98	448.71	65.94	655.51	814.63	247.51	1464.61	795.10	1026.20	2545.23	2869.19	4099.18	3253.23	2.76	4.22	135.29	991.33	1308.83	175.09
45	E4_Ad	KnownBoundary	1	3620.49	31.38	1922.76	702.84	334.13	588.41	130.37	1633.51	2061.35	676.81	2906.58	849.28	1244.24	1462.37	2306.95	4228.55	4292.28	12.48	13.27	174.69	1802.17	1321.66	449.52
46	ER4g	ExonRegion	0	609.68	11.47	519.85	108.51	98.63	90.70	38.47	567.87	898.05	116.57	445.80	372.85	471.63	2117.98	2420.69	3401.72	3080.00	10.53	24.85	41.49	844.95	262.52	224.59
47	E4_Dd	KnownBoundary	1	1865.81	24.27	2155.39	744.63	557.64	535.15	231.06	1922.80	2138.32	471.72	1199.51	192.81	271.57	2490.98	3216.52	10288.24	7524.72	46.34	60.80	106.81	2524.78	1081.69	1015.05
48	ER4h	ExonRegion	0	3247.77	41.74	769.82	366.90	614.05	592.27	132.46	1016.93	1185.28	293.67	1854.79	1855.56	2035.11	4090.47	5361.48	6449.63	3797.60	17.91	34.47	181.07	1443.12	1246.91	613.72
49	E4e_E5a	KnownJunction	1	12999.12	108.34	845.42	803.86	2013.41	1434.00	324.38	1467.82	1669.66	536.73	4871.65	4818.37	6351.53	1944.27	1654.87	11237.56	5033.28	35.07	25.88	506.80	1463.32	3648.90	539.75
50	I4	Intron	0	449.10	3.05	22.56	20.42	77.20	37.38	7.01	50.68	45.31	4.37	148.37	136.89	66.58	64.78	41.47	178.59	105.43	0.65	3.09	9.20	13.61	79.97	16.32
51	I4_SR1	SilentIntronRegion	0	339.19	4.11	32.34	16.56	36.41	32.33	5.73	25.66	50.91	1.37	99.17	44.89	28.34	103.10	77.26	200.04	111.08	0.56	18.28	7.35	30.90	68.12	43.92
52	I4_AR2	ActiveIntronRegion	0	709.50	4.29	52.65	35.08	67.39	38.85	8.24	51.41	78.50	4.59	172.46	102.78	42.21	191.53	169.24	306.68	185.09	1.85	9.20	10.17	34.61	112.66	49.38
53	I4_SR2	SilentIntronRegion	0	463.48	2.98	33.62	21.53	60.92	31.73	8.39	59.16	55.31	4.37	117.50	107.23	61.99	111.23	56.36	238.60	117.30	0.93	4.30	9.25	23.11	80.48	21.72
54	I4_SR3	SilentIntronRegion	1	411.77	4.54	31.14	33.87	78.31	74.51	16.00	85.41	74.77	14.64	158.53	181.69	84.89	100.02	62.14	250.95	153.27	0.80	1.38	14.82	15.54	121.78	13.80
55	I4_AR3	ActiveIntronRegion	1	471.51	2.57	12.33	17.34	96.66	34.39	4.84	46.19	32.52	2.90	174.90	166.94	77.14	20.25	13.88	130.06	85.79	0.42	0.00	8.63	4.72	74.01	7.55
56	E5_Aa	NovelBoundary	0	1506.12	2.96	2.99	56.44	257.64	51.67	15.85	84.00	83.19	12.03	279.97	301.15	166.39	36.73	30.90	236.26	120.43	0.00	0.00	17.64	13.96	173.90	20.57
57	ER5a	ExonRegion	0	4293.71	98.96	1044.97	512.67	636.30	886.20	207.99	1152.52	1250.69	345.06	1718.44	1052.00	1130.43	4764.10	6384.07	6155.79	3289.37	24.74	53.78	210.14	1723.84	1636.66	829.59
58	E5a_E6a	KnownJunction	1	3168.34	138.13	1466.83	970.17	596.18	1525.14	271.20	1988.52	2081.05	559.59	1557.18	516.77	596.55	2767.51	2744.92	7477.61	4270.96	46.05	44.61	144.45	1546.16	2322.71	1008.05
59	E5a_E6b	NovelJunction	0	21.41	0.00	0.00	0.00	15.03	21.46	0.00	2.55	13.57	5.48	53.65	17.11	20.45	6.83	4.45	10.68	27.40	0.00	0.00	5.43	5.00	2.76	3.67
60	E5a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
61	ER6a	ExonRegion	0	4626.16	114.05	2075.03	736.89	1862.16	989.73	365.58	2374.69	2379.27	415.44	3093.40	1657.45	1181.49	8159.21	10971.45	10073.91	6310.49	52.24	95.64	341.88	4153.35	2515.81	1487.85
62	E6_Da	KnownBoundary	0	364.21	49.93	20.40	33.03	51.36	16.87	41.91	47.85	55.32	2.90	61.23	52.82	26.62	49.44	11.37	162.01	178.31	0.00	4.05	66.73	43.06	81.81	3.50
63	E6a_E6b	KnownJunction	0	2554.08	47.16	357.56	526.14	417.06	820.15	159.87	1097.46	1232.34	289.20	2034.52	1653.54	1291.15	2986.54	4009.41	6031.92	3787.47	5.35	23.72	89.36	1055.65	2391.47	375.17
64	E6a_E6c	KnownJunction	0	17.86	0.00	6.59	2.03	3.57	0.00	1.90	7.27	8.13	1.53	2.68	0.00	0.00	15.19	14.96	28.20	26.93	0.00	0.00	0.00	6.18	6.25	8.02
65	E6_Db	KnownBoundary	0	477.49	0.00	69.78	46.01	92.02	21.35	22.57	61.69	48.38	12.68	117.19	18.01	19.32	24.96	18.05	228.23	168.86	2.28	8.28	6.52	62.58	154.25	25.61
66	E6b_E6b	KnownJunction	0	3.04	64.73	0.00	0.00	0.00	0.00	45.40	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.74	0.00	0.00	98.43	0.00	0.00	0.00
67	ER6b	ExonRegion	0	402.96	64.06	62.43	39.90	72.25	26.79	65.90	78.16	83.99	5.73	111.79	52.19	24.75	244.34	54.96	277.89	248.30	0.00	8.85	109.69	91.33	146.66	34.91
68	ER6c	ExonRegion	0	687.98	4.74	99.76	81.73	120.18	227.41	22.18	116.89	115.52	18.15	105.55	102.73	45.07	554.37	428.13	341.78	229.49	0.39	3.53	10.94	67.61	177.31	82.11
69	E6_Ab	KnownBoundary	0	679.60	0.00	0.00	40.39	7.47	21.46	6.54	81.66	80.67	5.32	28.90	19.36	0.00	0.00	0.00	200.03	175.78	0.00	0.00	0.00	0.00	198.76	0.00
70	ER6d	ExonRegion	0	3032.44	122.52	2039.02	962.20	611.41	1069.10	272.07	2493.29	2511.61	552.81	2746.65	2353.06	1466.81	6598.80	7620.14	9689.87	6276.65	25.87	82.82	264.36	3588.19	2875.26	1289.19
71	E6c_E7a	KnownJunction	0	3302.14	108.53	138.88	656.89	419.44	1058.14	260.30	1153.85	1120.33	307.35	2418.03	2712.13	1570.35	3114.44	4607.59	10089.75	3745.76	5.35	31.15	236.05	884.84	3952.07	511.75
72	ER6e	ExonRegion	0	2796.07	115.19	1976.83	1126.91	364.19	1020.31	257.56	2573.91	2629.52	646.44	2748.17	2468.26	1313.04	4846.37	5632.78	11344.07	5968.85	32.53	111.83	268.69	3198.92	3530.52	1286.35
73	ER7a	ExonRegion	0	3705.05	91.81	2447.47	1372.00	1211.72	1124.88	319.87	3031.49	2932.03	727.42	3837.89	2656.85	1532.96	10037.87	13434.19	14356.24	6349.96	58.86	205.06	430.81	4085.13	3810.02	1977.83
74	E7a_E8a	KnownJunction	0	1534.35	23.94	403.59	166.38	914.09	334.81	61.52	1459.20	1584.56	96.33	1184.14	1069.25	614.89	4587.40	6159.11	7978.16	4349.50	17.08	21.27	74.34	1051.33	484.91	640.31
75	ER8a	ExonRegion	0	5397.36	86.34	1713.09	906.61	2221.35	1027.45	260.26	2091.95	1966.33	451.82	3171.44	2836.53	1925.61	8979.79	13945.87	8247.63	5439.29	36.89	133.39	269.98	2971.62	2332.55	1590.08
76	E8_Da	KnownBoundary	1	9757.51	42.56	593.44	407.57	2619.87	628.10	262.50	670.37	641.86	106.16	369.78	1561.56	1780.08	4564.56	6948.41	2758.08	1572.13	27.23	46.40	44.29	358.74	714.59	725.84
77	ER8b	ExonRegion	1	2401.24	10.12	194.03	153.23	649.48	181.00	77.42	204.82	221.53	34.12	114.35	467.09	402.81	1727.55	2498.70	922.44	555.23	10.67	15.85	14.75	119.85	227.48	238.74
78	IG23_SR1	SilentIntergenicRegion	0	0.76	0.00	2.12	1.63	0.87	5.06	0.75	0.00	2.82	2.26	7.71	13.74	3.46	4.13	3.84	0.88	0.94	0.00	0.91	0.61	0.62	2.58	2.95
79	IG23_AR1	ActiveIntergenicRegion	0	2.12	0.00	2.45	4.77	8.03	10.39	0.00	0.00	7.20	5.16	21.91	29.58	9.38	12.18	0.00	2.97	0.00	0.00	0.00	0.00	0.37	4.17	5.87
80	IG23_SR2	SilentIntergenicRegion	0	5.53	0.00	3.25	5.39	3.46	20.07	0.72	0.00	8.29	5.29	13.64	37.40	4.89	10.92	2.50	10.20	0.00	0.00	0.00	0.00	1.56	15.25	9.26
81	IG23_AR2	ActiveIntergenicRegion	0	10.58	0.00	3.68	1.59	2.68	12.23	1.54	0.00	6.18	4.40	9.34	47.62	4.69	16.24	2.90	0.00	0.00	0.00	0.00	0.00	0.00	1.39	5.87