Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PRR3 Gene 0 71.64 161.69 137.70 117.52 111.16 97.87 74.03 105.40 83.21 180.92 48.49 65.74 72.54 75.38 82.31 71.08 80.33 135.72 169.64 111.04 50.70 45.90 46.86 2 416233 Transcript 0 7.57 6.40 9.47 6.89 12.06 9.27 6.50 9.81 12.55 13.37 1.43 4.14 1.99 1.50 1.80 1.87 2.51 2.41 4.90 7.51 5.11 4.02 5.12 3 376560 Transcript 0 1.29 1.04 0.00 0.00 5.65 7.87 2.66 0.00 0.28 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 4 376555 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 376557 Transcript 1 7.19 5.85 45.42 13.52 4.16 14.37 0.00 17.05 6.16 73.09 23.53 12.45 6.66 7.06 4.45 0.00 51.99 29.76 18.73 27.29 16.99 4.90 4.10 6 481741 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 498336 Transcript 0 11.34 0.00 5.94 9.86 0.00 0.00 0.00 20.13 13.74 37.28 60.38 12.45 19.80 72.28 127.82 102.20 98.64 5.80 130.73 12.91 64.87 20.02 29.62 8 491173 Transcript 1 28.43 35.42 29.02 40.87 66.30 44.76 39.35 33.47 43.01 53.21 13.38 55.74 41.23 20.66 21.80 15.05 22.13 12.25 24.69 25.18 10.45 30.05 19.70 9 470703 Transcript 0 47.49 32.83 39.07 52.86 64.62 41.30 36.49 52.59 59.16 76.81 24.00 40.73 39.74 37.84 38.95 38.05 33.44 44.56 35.76 36.56 25.19 31.64 37.84 10 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 E2_Aa NovelBoundary 0 6.37 8.42 81.25 27.20 118.76 150.71 145.91 78.99 67.62 123.19 57.59 29.86 19.80 33.32 67.25 20.34 28.14 50.28 41.22 80.15 40.59 17.21 56.17 12 ER2a ExonRegion 0 1.29 1.04 0.00 0.00 5.65 7.87 2.66 0.00 0.28 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 13 E2_Ab KnownBoundary 0 6.52 0.00 42.81 24.11 0.00 25.55 3.58 29.20 35.16 77.04 36.43 12.15 12.99 19.37 31.15 7.78 17.67 31.30 14.40 40.72 18.16 8.08 7.26 14 ER2b ExonRegion 0 2.93 1.99 8.27 3.19 3.75 7.72 3.37 5.45 11.72 9.87 1.98 1.03 0.00 5.52 4.95 12.26 1.23 5.32 4.54 5.12 1.77 8.99 3.27 15 E2_Ac KnownBoundary 0 24.08 6.25 5.77 3.60 7.98 32.94 12.72 13.35 21.01 17.76 4.58 0.00 0.00 0.00 4.45 7.52 0.00 14.34 11.95 0.00 3.15 15.00 0.00 16 ER2c ExonRegion 0 4.54 2.84 14.56 5.86 9.05 17.23 7.21 15.61 23.75 25.99 5.72 1.54 1.67 9.40 7.82 15.72 10.99 9.40 9.34 12.50 11.50 8.86 7.71 17 E2_Ad KnownBoundary 1 6.45 3.35 14.04 10.72 3.48 26.52 2.21 20.17 41.87 33.71 11.95 0.00 0.00 6.71 14.83 35.12 0.00 13.39 11.48 19.43 18.59 24.00 8.62 18 ER2d ExonRegion 0 17.80 21.05 34.27 15.59 20.30 46.87 17.99 26.84 35.02 40.61 17.62 0.00 0.00 19.78 34.39 39.25 26.80 33.86 45.34 28.03 26.25 18.38 12.96 19 E2_Ae KnownBoundary 0 0.00 3.22 6.89 1.76 0.00 2.78 0.00 11.38 4.83 7.60 0.00 0.00 0.00 5.30 0.00 8.72 0.00 4.97 8.09 3.07 8.46 6.12 3.59 20 E2_Af KnownBoundary 0 23.19 42.95 4.82 7.46 26.32 99.72 36.74 2.55 1.71 9.43 30.59 0.00 0.00 24.07 4.45 42.89 51.61 10.78 87.53 43.27 8.09 2.69 21.94 21 ER2e ExonRegion 1 81.49 133.20 81.49 32.03 70.91 156.79 103.93 50.13 36.44 84.87 52.19 0.00 0.00 50.35 116.05 105.51 117.18 113.64 216.60 108.51 56.19 29.17 33.77 22 E2_Ag KnownBoundary 1 285.38 487.28 193.96 103.92 241.60 576.54 369.33 130.29 67.65 243.23 175.20 0.00 13.64 69.69 254.78 237.89 295.09 419.72 631.17 345.15 142.46 43.29 108.58 23 ER2f ExonRegion 1 158.74 262.53 129.97 58.08 148.03 344.10 204.23 84.86 45.42 163.75 125.89 0.00 6.96 78.11 180.35 165.77 208.38 261.90 401.05 226.08 102.15 33.47 72.75 24 ER2g ExonRegion 1 73.44 161.94 101.00 71.78 125.68 197.44 141.56 94.13 61.94 192.98 83.51 11.31 6.15 56.12 62.00 82.41 118.10 267.21 249.17 170.32 86.16 19.90 60.16 25 E2_Da NovelBoundary 0 14.00 2.70 20.46 10.29 3.99 14.54 1.77 10.76 20.05 22.91 4.53 0.00 6.33 4.59 10.63 0.00 14.12 12.56 0.00 20.71 24.83 12.31 11.87 26 E2a_E3a KnownJunction 0 0.00 2.43 10.38 11.15 7.89 21.58 0.00 6.45 6.89 37.04 39.06 0.00 6.82 16.66 4.45 7.26 17.86 5.68 4.52 12.21 20.32 2.45 4.35 27 E2a_E4b KnownJunction 0 11.04 3.09 0.00 0.00 0.00 0.00 0.00 7.11 6.83 2.58 9.69 0.00 0.00 2.24 4.45 4.36 16.55 2.57 0.00 0.00 8.46 3.00 7.09 28 E2a_E4c KnownJunction 1 7.19 5.85 45.42 13.52 4.16 14.37 0.00 17.05 6.16 73.09 23.53 12.45 6.66 7.06 4.45 0.00 51.99 29.76 18.73 27.29 16.99 4.90 4.10 29 I2 Intron 0 27.49 17.95 19.72 30.08 32.80 31.97 16.52 25.74 47.67 53.74 13.40 17.26 21.42 20.56 14.94 25.37 21.43 20.91 24.87 29.65 26.20 20.22 23.78 30 I2_AR1 ActiveIntronRegion 0 27.57 18.00 19.77 30.17 32.89 32.07 16.56 25.82 47.81 53.89 13.44 17.31 21.48 20.62 14.98 25.44 21.50 20.97 24.94 29.74 26.28 20.28 23.84 31 E3_Aa NovelBoundary 0 21.04 37.49 24.98 44.75 37.44 50.14 35.60 32.24 45.98 40.80 12.11 24.46 0.00 11.83 10.75 7.95 16.92 4.81 22.40 17.07 22.61 20.57 0.00 32 ER3a ExonRegion 0 30.50 22.34 33.71 26.80 35.89 38.34 23.96 39.43 35.35 101.22 55.26 55.32 34.69 43.67 58.67 57.37 95.78 37.83 89.39 56.03 61.35 28.34 22.00 33 E3_Da KnownBoundary 1 14.52 18.02 26.64 31.80 59.59 37.31 52.91 31.22 29.75 51.66 12.37 84.03 27.11 16.72 10.01 22.13 12.53 12.19 13.65 29.85 14.83 21.06 11.18 34 E3a_E4b KnownJunction 0 11.34 0.00 5.94 9.86 0.00 0.00 0.00 20.13 13.74 37.28 60.38 12.45 19.80 72.28 127.82 102.20 98.64 5.80 130.73 12.91 64.87 20.02 29.62 35 E3a_E4c KnownJunction 0 3.70 13.29 46.36 15.25 0.00 13.86 4.50 36.47 18.87 67.15 16.74 12.60 0.00 27.08 10.51 14.61 39.93 49.74 91.20 65.71 10.50 10.90 0.00 36 ER3b ExonRegion 1 28.43 35.42 29.02 40.87 66.30 44.76 39.35 33.47 43.01 53.21 13.38 55.74 41.23 20.66 21.80 15.05 22.13 12.25 24.69 25.18 10.45 30.05 19.70 37 E3_Db NovelBoundary 1 36.30 34.14 33.62 69.92 63.41 51.39 43.81 49.58 67.68 64.90 16.64 93.78 31.98 11.48 15.70 19.48 13.84 10.57 19.20 33.56 9.27 31.47 24.41 38 E4_Aa NovelBoundary 0 10.96 18.94 33.53 33.76 40.24 26.92 27.12 21.19 44.99 38.33 10.00 38.71 13.31 18.72 27.20 15.21 9.07 16.08 13.27 33.36 10.75 26.15 32.18 39 ER4a ExonRegion 0 39.47 39.00 46.65 62.86 61.82 36.33 40.18 59.15 66.18 78.33 13.68 31.99 45.53 30.84 42.36 29.80 26.66 63.71 30.47 42.47 23.39 29.67 34.13 40 E4_Ab KnownBoundary 0 86.83 53.54 45.77 69.02 152.21 74.56 66.46 50.52 63.95 74.89 12.79 43.21 53.08 32.61 41.41 22.64 12.34 24.95 21.65 37.01 22.30 36.25 27.40 41 ER4b ExonRegion 0 73.27 34.77 40.85 62.45 83.88 34.64 35.69 64.42 73.40 88.66 68.97 95.90 61.77 73.72 80.94 96.71 74.63 28.95 94.32 39.00 48.90 47.78 48.16 42 E4_Da KnownBoundary 0 51.86 40.26 31.61 37.39 52.12 43.61 23.63 64.77 52.69 96.54 37.96 91.83 66.72 56.21 78.25 85.70 59.93 38.88 102.40 26.78 35.77 55.48 62.40 43 ER4c ExonRegion 0 51.51 45.78 36.87 44.36 116.83 63.45 44.15 67.39 63.82 94.18 44.38 60.02 52.41 62.98 52.08 65.13 67.05 32.10 76.41 33.01 56.00 38.99 33.00 44 E4_Db KnownBoundary 0 78.31 37.16 41.31 53.87 131.41 34.75 79.76 55.00 47.92 67.26 61.33 51.17 100.48 71.52 60.82 68.87 47.12 21.14 56.66 26.59 45.96 17.33 35.77 45 E4b_E4c KnownJunction 0 23.63 15.00 5.82 14.98 43.12 10.33 4.24 35.04 24.51 24.20 13.00 19.66 42.37 26.66 17.80 22.99 32.16 18.99 23.91 12.21 43.37 6.18 8.11 46 ER4d ExonRegion 0 55.51 26.65 31.48 42.86 67.43 46.28 32.79 46.03 52.13 75.30 34.31 49.47 33.94 44.85 35.54 46.30 40.22 25.40 41.04 30.64 26.99 33.60 41.56 47 E4_Ac KnownBoundary 0 25.93 11.25 23.33 41.39 32.60 25.89 7.55 23.33 36.31 55.87 17.00 0.00 13.64 19.13 16.94 16.24 21.69 23.21 28.99 10.93 28.85 25.84 44.05 48 ER4e ExonRegion 0 72.49 174.59 196.63 133.40 122.56 194.28 122.38 170.16 117.28 328.47 88.71 83.86 73.88 133.76 134.59 133.61 158.51 345.34 323.94 264.97 102.36 63.91 71.83 49 E4c_E5a KnownJunction 0 115.58 281.99 274.06 238.96 135.23 121.07 92.48 244.51 151.79 421.95 71.70 140.75 82.30 183.53 198.03 227.97 217.02 472.11 458.55 346.30 70.43 121.85 115.75 50 I4 Intron 0 6.13 5.50 9.88 10.99 17.57 21.26 6.39 13.43 18.49 25.10 5.23 2.66 4.48 3.60 4.85 9.19 3.83 4.61 7.38 10.28 6.81 8.85 10.21 51 I4_SR1 SilentIntronRegion 0 6.20 5.56 9.98 11.11 17.78 21.50 6.47 13.58 18.70 25.37 5.29 2.69 4.53 3.64 4.90 9.29 3.87 4.67 7.47 10.39 6.89 8.96 10.33 52 E5_Aa NovelBoundary 0 6.37 12.89 15.37 24.47 7.30 12.44 7.46 10.72 37.96 32.29 2.05 12.45 6.82 9.71 4.45 7.18 17.86 7.96 0.00 22.75 21.87 13.47 3.33 53 ER5a ExonRegion 0 165.86 481.18 381.63 306.44 257.02 222.80 164.86 248.49 165.95 444.98 114.87 155.38 182.47 186.19 198.68 162.81 192.73 322.75 465.47 266.83 109.39 98.85 92.64 54 E5_Da KnownBoundary 0 32.30 25.13 12.83 18.41 18.59 22.66 21.11 17.46 25.84 20.58 2.26 0.00 0.00 7.42 4.94 3.59 13.18 5.72 13.37 5.43 10.75 7.90 4.35 55 ER5b ExonRegion 0 15.14 12.80 18.93 13.79 24.12 18.53 13.00 19.62 25.10 26.74 2.87 8.29 3.98 3.00 3.60 3.74 5.03 4.82 9.81 15.03 10.21 8.04 10.25