Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C6orf136 Gene 0 43.75 25.09 45.33 37.74 51.15 37.86 14.98 70.77 46.87 45.35 87.59 35.26 36.02 76.67 80.91 65.37 60.07 50.31 41.25 34.27 24.54 22.36 28.29 2 484551 Transcript 0 0.00 0.00 0.00 0.00 2.68 0.49 0.55 0.00 0.00 0.00 0.45 0.00 0.00 0.43 1.11 1.05 0.00 0.00 0.00 0.75 0.00 0.00 0.00 3 488383 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 376473 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 463794 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 376471 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 493705 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.48 0.00 0.00 0.00 0.00 0.00 0.00 4.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 446773 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 293604 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 487873 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 465699 Transcript 0 35.50 17.30 25.22 21.73 57.60 19.34 10.34 48.30 32.11 23.54 28.05 14.21 14.16 29.91 35.96 24.23 21.11 33.78 18.45 16.70 5.07 9.40 11.58 12 467801 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 468785 Transcript 0 0.00 3.29 2.72 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 4.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 460172 Transcript 0 10.69 2.78 3.93 4.63 4.44 3.67 3.55 8.05 4.29 5.16 6.61 1.14 4.32 6.37 8.70 3.75 3.74 2.14 2.10 3.70 2.90 1.64 3.01 15 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 5.35 0.97 1.09 0.00 0.00 0.00 0.91 0.00 0.00 0.86 2.22 2.10 0.00 0.00 0.00 1.50 0.00 0.00 0.00 16 E1_Ac KnownBoundary 0 6.30 0.00 2.78 0.00 28.86 20.50 4.46 6.61 2.78 6.18 2.68 0.00 0.00 2.47 22.25 8.03 8.23 2.45 0.00 3.26 2.90 0.00 0.00 17 ER1b ExonRegion 0 0.94 0.00 0.00 0.00 10.70 6.72 2.65 0.00 0.00 0.00 1.93 0.00 0.00 2.26 13.06 2.97 0.00 0.00 0.00 2.13 2.08 0.00 0.00 18 ER1c ExonRegion 0 3.91 0.00 0.00 0.00 4.95 4.46 1.30 0.23 0.00 0.00 0.91 0.00 0.00 1.90 4.71 1.18 0.12 0.00 0.00 1.45 1.83 0.00 0.00 19 E1_Ad KnownBoundary 0 7.48 0.00 0.00 0.00 3.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.41 0.00 0.00 0.00 0.00 0.00 2.88 2.47 0.00 0.00 20 ER1d ExonRegion 0 14.04 2.62 4.39 3.66 9.51 7.82 3.94 12.92 0.55 3.98 17.90 1.82 0.00 25.05 19.32 48.10 24.84 4.42 25.99 5.32 7.48 7.07 26.97 21 E1_Ae KnownBoundary 0 36.38 3.35 1.83 7.56 24.11 16.98 13.03 9.98 0.00 4.41 52.17 6.30 0.00 58.80 39.43 115.01 48.71 19.90 56.19 3.26 9.08 20.45 76.40 22 E1_Af KnownBoundary 0 14.00 6.12 15.52 7.69 0.00 5.22 2.03 26.82 3.41 17.73 25.59 0.00 0.00 40.08 31.15 20.08 30.86 33.29 13.55 15.92 8.59 3.12 10.67 23 ER1e ExonRegion 1 22.80 6.10 11.59 6.81 8.88 12.75 7.58 23.33 2.58 12.72 45.60 4.33 1.49 59.80 45.76 78.63 52.36 16.63 44.16 12.67 11.22 14.87 48.86 24 ER1f ExonRegion 0 10.84 3.41 8.03 4.51 4.41 1.77 2.23 22.41 13.70 19.89 41.70 11.10 11.38 29.66 26.41 24.51 35.97 19.69 16.96 7.11 17.22 8.98 21.74 25 E1a_E2b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.48 0.00 0.00 0.00 0.00 0.00 0.00 4.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26 E1a_E3a KnownJunction 1 3.26 0.00 12.71 1.93 3.90 5.17 8.35 20.25 7.03 23.61 73.91 7.35 15.10 27.78 18.54 3.50 61.80 7.01 3.58 5.43 19.15 3.12 0.00 27 E1a_E3b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28 E1a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29 E1a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 E2_Aa NovelBoundary 0 6.52 0.00 3.13 1.50 0.00 5.68 1.99 0.00 7.09 2.18 9.90 0.00 6.01 12.01 14.83 4.02 4.30 10.28 17.98 5.37 0.00 2.88 7.94 31 ER2a ExonRegion 0 7.29 2.36 14.79 3.00 7.18 10.97 2.63 12.50 11.93 14.50 15.67 0.98 4.24 19.75 18.45 13.29 15.49 11.93 10.26 11.98 5.24 3.55 6.44 32 E2_Ab KnownBoundary 0 3.78 0.00 25.04 2.93 7.98 7.72 4.33 11.95 14.76 26.92 22.16 0.00 0.00 26.55 20.40 20.08 35.72 23.13 29.93 22.24 18.16 5.39 0.00 33 ER2b ExonRegion 0 3.55 6.31 23.71 8.31 10.07 16.24 4.79 30.63 22.33 23.39 23.74 7.76 4.69 36.66 29.64 23.83 21.03 39.90 19.03 19.51 9.25 2.70 8.98 34 E2_Da NovelBoundary 0 6.82 3.09 5.85 15.58 0.00 2.38 0.00 14.01 11.75 5.67 16.69 0.00 0.00 14.13 4.45 3.50 3.65 19.32 12.99 12.40 16.12 5.20 7.51 35 E2a_E3a KnownJunction 0 30.01 15.98 18.54 8.66 31.49 17.55 10.07 37.62 23.78 27.40 20.16 0.00 11.85 26.08 13.60 21.70 17.20 24.71 9.22 15.53 11.18 2.88 7.00 36 Ix Intron 0 8.53 9.33 12.70 18.14 16.71 17.69 7.43 25.46 17.32 12.70 9.16 9.26 8.41 11.82 8.99 10.58 7.05 6.32 9.57 12.79 4.36 3.29 4.18 37 Ix_SR1 SilentIntronRegion 0 9.49 10.03 13.86 21.36 20.48 18.64 9.14 30.11 19.58 13.62 9.68 11.24 10.71 12.65 10.02 11.61 7.54 5.45 11.84 13.88 4.34 3.81 5.16 38 E3_Aa NovelBoundary 0 44.75 39.34 22.53 89.33 85.57 58.21 27.69 97.72 41.03 29.23 27.38 31.51 27.11 9.36 10.51 20.42 8.51 19.40 22.21 36.43 3.15 15.25 26.46 39 ER3a ExonRegion 0 70.22 45.72 57.55 47.05 79.53 67.17 25.18 111.44 70.80 71.55 126.09 57.02 62.28 130.11 122.20 95.81 108.44 88.06 70.67 58.14 50.67 31.76 50.18 40 E3_Ab KnownBoundary 1 82.09 60.98 59.90 35.63 56.45 59.91 32.02 109.63 62.70 61.65 155.36 46.22 94.96 107.66 146.36 61.10 131.65 62.59 9.22 50.30 68.39 16.47 18.61 41 ER3b ExonRegion 0 77.49 48.11 75.62 62.79 96.52 68.31 26.94 118.35 81.56 85.49 167.80 69.16 76.52 159.09 139.04 121.68 121.96 98.22 80.95 57.83 59.97 47.45 57.80 42 E3_Ac KnownBoundary 0 14.15 48.15 37.96 34.93 20.97 38.39 27.47 67.44 30.73 35.70 81.86 37.06 63.96 95.36 61.44 54.77 58.72 43.07 30.97 50.11 16.37 24.19 31.58 43 E3_Da KnownBoundary 0 42.16 34.99 38.56 34.43 64.86 18.00 21.77 68.80 57.81 35.65 127.93 31.21 20.62 61.98 96.55 138.25 58.25 29.80 72.76 33.68 36.20 30.31 69.91 44 ER3c ExonRegion 0 38.40 59.55 61.79 54.71 62.31 45.32 33.10 119.51 71.99 70.45 168.99 81.64 91.12 151.04 157.50 155.82 105.16 79.72 84.64 57.45 46.59 48.81 84.32 45 ER3d ExonRegion 0 46.79 38.68 54.34 46.37 65.09 41.14 28.35 111.03 77.76 68.69 176.69 83.01 85.34 166.44 182.53 195.26 122.42 82.31 81.50 52.50 44.22 57.34 74.12 46 E3_Db NovelBoundary 0 6.00 26.71 14.52 16.12 39.47 13.17 2.25 22.39 19.50 11.50 17.69 0.00 13.47 27.55 38.45 17.00 25.62 20.69 3.67 21.22 0.00 3.00 16.30 47 E3b_E4a KnownJunction 0 53.27 21.97 58.75 43.45 64.69 51.39 26.72 110.24 74.65 69.73 183.94 132.04 87.01 139.03 134.37 137.49 161.38 85.06 56.28 67.88 35.65 45.07 49.68 48 Ix Intron 0 9.15 14.77 14.20 12.29 24.05 25.98 6.18 17.81 15.27 10.93 8.35 3.70 5.63 13.55 10.76 8.74 6.85 10.32 13.77 7.72 2.29 2.88 6.09 49 Ix_SR1 SilentIntronRegion 0 9.23 14.91 14.35 12.42 24.29 26.24 6.24 17.99 15.42 11.04 8.43 3.74 5.69 13.69 10.86 8.82 6.92 10.43 13.91 7.79 2.30 2.91 6.15 50 E4_Aa NovelBoundary 1 45.05 9.01 30.84 70.59 88.29 108.57 23.67 59.60 53.56 39.46 22.22 25.06 6.82 20.07 16.44 33.41 0.00 32.04 9.60 20.13 0.00 11.51 18.95 51 ER4a ExonRegion 0 51.70 44.61 73.26 62.54 95.41 83.84 20.29 112.89 84.60 78.01 235.62 105.11 59.89 129.40 120.38 90.53 149.95 85.51 51.17 61.63 47.43 33.54 44.34 52 E4_Da NovelBoundary 0 16.08 12.30 44.97 73.32 65.70 20.22 18.15 78.99 33.42 37.93 20.48 25.36 26.13 32.84 8.90 8.20 4.68 35.61 55.34 29.15 14.33 0.00 8.71 53 E4a_E5a KnownJunction 0 73.27 58.74 44.56 38.86 100.17 56.79 26.94 87.49 78.53 54.40 189.57 80.58 59.74 133.09 80.85 158.93 115.01 62.39 80.47 35.60 31.01 47.46 53.95 54 ER4b ExonRegion 0 72.82 53.55 77.74 68.09 132.40 74.23 33.34 114.97 94.69 73.02 200.38 66.71 99.53 152.13 125.94 118.22 89.74 93.48 97.68 67.45 41.22 36.81 54.06 55 E4_Db NovelBoundary 0 3.78 15.98 16.38 56.14 30.05 39.24 9.01 62.02 53.04 27.72 18.00 6.30 6.82 21.48 31.65 0.00 14.31 27.36 31.72 24.03 0.00 11.76 12.21 56 E4b_E5a KnownJunction 0 10.22 15.59 10.50 5.69 20.97 13.23 2.03 9.98 8.65 1.05 7.63 0.00 0.00 20.48 10.26 4.02 0.00 13.14 18.82 5.18 2.66 2.33 4.18 57 ER4c ExonRegion 0 57.15 54.91 66.17 59.97 104.35 53.18 26.48 112.35 91.40 61.93 201.02 77.93 98.49 167.28 145.06 139.69 102.33 77.61 114.67 55.32 35.26 47.92 41.11 58 ER4d ExonRegion 0 13.05 12.43 19.20 20.06 34.19 11.31 7.58 26.50 17.02 12.55 14.82 7.70 7.82 26.62 9.51 5.61 5.32 20.53 32.74 15.37 3.67 1.62 2.94 59 Ix Intron 0 30.09 11.94 23.71 37.67 54.59 33.44 13.50 70.10 30.15 26.94 21.51 9.29 17.31 25.48 12.08 28.48 9.18 23.29 20.68 14.47 4.77 9.66 12.71 60 Ix_SR1 SilentIntronRegion 0 30.62 12.16 24.14 38.35 55.60 34.04 13.75 71.39 30.71 27.43 21.91 9.46 17.57 25.96 12.30 29.01 9.35 23.72 21.02 14.74 4.86 9.84 12.94 61 E5_Aa NovelBoundary 0 86.02 39.27 26.97 57.27 61.21 47.02 32.19 42.59 54.54 37.55 12.27 6.60 7.30 30.73 22.37 3.59 31.14 31.71 18.26 24.86 2.72 16.23 12.46 62 ER5a ExonRegion 0 112.60 62.35 79.65 81.99 110.56 103.28 27.43 168.49 104.47 85.42 206.86 89.27 79.07 160.04 139.84 153.72 133.22 109.20 79.95 56.26 38.34 60.17 55.80 63 E5_Da KnownBoundary 0 227.97 100.71 122.29 142.11 170.03 169.11 50.48 274.29 148.44 131.78 217.16 61.82 100.97 143.86 163.05 154.75 148.11 139.49 72.85 82.26 54.36 67.85 73.41 64 ER5b ExonRegion 0 239.81 72.59 109.79 105.32 142.82 123.95 34.92 184.62 103.02 108.77 220.97 107.36 119.56 190.47 223.52 215.67 148.06 114.24 115.92 73.67 52.92 59.03 91.72 65 E5_Ab KnownBoundary 0 66.09 29.86 109.69 104.68 72.07 42.02 22.96 134.97 105.81 94.50 118.50 56.42 48.86 129.67 205.70 72.03 76.20 98.95 33.22 60.08 11.92 20.64 24.33 66 ER5c ExonRegion 0 62.00 30.88 99.85 74.54 81.28 50.34 23.82 119.33 91.49 91.56 133.49 63.20 73.04 114.42 145.66 111.24 94.32 75.94 45.29 53.50 36.36 35.09 30.19 67 E5_Db NovelBoundary 0 14.89 3.35 4.97 9.29 67.40 19.31 17.14 4.89 10.73 4.38 5.11 0.00 13.64 7.30 8.90 12.56 4.21 4.35 16.57 3.07 6.30 0.00 0.00 68 E5b_E6b KnownJunction 0 136.32 58.61 94.53 77.71 84.04 60.42 41.29 158.34 105.79 92.83 170.78 36.46 79.22 150.39 220.78 164.74 122.39 70.76 66.17 62.77 54.36 54.68 26.55 69 E5b_E6c KnownJunction 0 0.00 3.29 2.72 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 4.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 70 E6_Aa NovelBoundary 0 10.74 8.81 14.37 17.71 37.18 5.22 11.00 11.58 14.67 4.65 10.48 0.00 6.82 4.94 16.56 16.24 0.00 11.15 0.00 3.20 5.56 12.00 0.00 71 ER6a ExonRegion 0 10.69 2.78 3.93 4.63 4.44 3.67 3.55 8.05 4.29 5.16 6.61 1.14 4.32 6.37 8.70 3.75 3.74 2.14 2.10 3.70 2.90 1.64 3.01 72 E6_Ab KnownBoundary 0 17.34 3.35 6.74 10.45 4.16 5.00 4.24 18.65 2.86 10.61 7.48 0.00 6.82 7.42 14.09 7.01 7.67 0.00 3.58 5.75 5.56 0.00 4.35 73 ER6b ExonRegion 0 91.69 43.93 105.36 107.69 121.27 87.12 34.63 167.93 106.52 92.37 169.56 60.61 56.57 130.53 162.16 118.34 86.38 89.60 75.32 68.41 35.56 55.26 36.87 74 E6_Da KnownBoundary 0 3.78 11.91 1.63 6.49 10.78 10.11 1.94 17.95 11.75 1.40 7.21 6.30 12.66 4.47 5.19 10.51 0.00 1.99 0.00 8.18 0.00 0.00 4.35 75 E6_Db KnownBoundary 0 0.00 0.00 3.67 0.00 0.00 0.00 2.25 2.51 3.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 76 E6b_E6c KnownJunction 0 118.98 56.83 115.08 118.97 197.79 92.67 31.53 141.34 61.34 82.52 196.52 31.66 74.02 116.72 185.55 120.91 107.71 74.86 71.63 72.99 34.97 35.45 63.60 77 E6_Dc KnownBoundary 0 0.00 16.05 12.74 6.19 12.14 14.31 10.82 20.25 7.18 5.00 0.00 7.65 6.82 15.01 5.19 8.37 9.35 20.06 9.60 3.20 3.15 3.00 4.35 78 E6c_E6c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 79 ER6c ExonRegion 0 82.54 58.97 107.22 118.23 168.57 115.07 45.68 175.44 91.09 88.02 171.06 51.95 83.25 130.74 205.26 130.77 97.38 98.85 73.26 71.28 36.36 29.17 56.53 80 ER6d ExonRegion 0 13.28 25.88 19.72 19.95 11.19 15.67 13.24 46.67 31.10 15.01 14.23 24.40 20.89 23.77 42.99 14.32 6.60 36.62 21.72 11.99 2.20 6.06 8.81 81 E6_Dd KnownBoundary 0 14.30 21.11 11.38 16.81 11.12 5.56 8.35 29.41 23.64 12.17 20.22 18.91 21.59 28.49 40.55 3.25 7.76 29.39 23.44 9.78 0.00 3.12 8.28 82 ER6e ExonRegion 0 15.62 22.18 23.46 21.03 13.38 10.65 15.64 45.85 30.47 18.08 16.84 23.09 17.64 30.78 39.24 9.20 8.17 39.95 31.85 13.88 3.36 5.66 9.09 83 ER6f ExonRegion 0 35.50 17.30 25.22 21.73 57.60 19.34 10.34 48.30 32.11 23.54 28.05 14.21 14.16 29.91 35.96 24.23 21.11 33.78 18.45 16.70 5.07 9.40 11.58 84 E6_Ac KnownBoundary 0 96.31 17.56 23.39 14.55 81.24 35.04 4.24 45.02 26.42 19.05 17.58 6.30 0.00 35.08 57.48 41.70 30.39 14.43 4.80 18.28 0.00 10.04 12.98 85 ER6g ExonRegion 0 52.00 42.02 93.56 79.26 81.84 54.79 15.49 125.79 77.89 70.13 138.23 37.28 38.10 95.69 156.62 88.09 70.02 60.50 44.17 61.48 32.28 31.88 29.91 86 E6_De KnownBoundary 0 26.67 38.87 50.77 80.61 11.29 32.99 19.70 98.66 39.58 51.39 136.98 62.27 41.23 98.65 88.88 90.66 59.84 71.26 76.43 71.72 11.92 64.85 26.38 87 ER6h ExonRegion 0 52.58 30.06 62.84 66.44 31.27 26.93 20.36 94.90 48.48 52.69 128.48 43.02 45.73 101.86 99.46 88.05 66.84 63.81 94.76 61.77 20.52 61.85 28.54 88 E6_Df KnownBoundary 0 71.05 24.27 57.21 35.19 57.05 14.76 18.06 57.54 47.60 33.17 84.60 16.81 49.35 88.41 74.42 58.70 54.42 29.06 77.37 36.05 24.65 35.09 29.88 89 ER6i ExonRegion 0 30.76 16.20 38.49 40.46 46.82 13.30 13.13 45.40 32.54 26.76 59.51 22.46 23.33 43.96 61.34 28.40 34.14 18.88 24.91 22.86 10.04 13.64 11.88 90 E6_Dg KnownBoundary 0 8.89 14.60 7.42 8.26 40.15 19.14 10.60 11.87 9.92 6.34 4.84 7.65 14.93 4.36 0.00 7.52 0.00 12.10 20.52 0.00 2.41 3.12 0.00 91 E6_Dh KnownBoundary 0 22.82 9.67 1.71 0.00 17.91 10.56 19.48 4.27 3.12 2.34 7.16 0.00 0.00 4.94 0.00 15.89 12.62 2.11 4.24 6.52 5.00 0.00 3.84 92 ER6j ExonRegion 0 17.54 18.30 11.03 8.96 39.37 20.17 21.75 15.31 13.23 9.83 14.08 16.08 18.76 9.28 2.90 20.38 9.90 11.09 17.75 7.60 8.81 3.87 5.45 93 ER6k ExonRegion 0 6.17 8.20 2.75 3.58 11.07 7.12 8.72 5.39 5.27 4.38 4.50 5.43 5.04 5.93 5.65 6.10 3.76 4.32 1.90 2.78 2.49 0.33 2.75 94 ER6l ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00