Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 HIST1H2BD Gene 0 67.79 70.37 167.43 110.24 81.14 26.63 123.26 51.73 51.84 240.77 109.56 52.62 52.00 122.99 270.59 109.64 65.91 31.58 93.82 108.26 101.63 35.99 15.48 2 377777 Transcript 0 27.33 7.56 29.21 3.97 2.38 1.10 3.63 9.65 11.63 8.84 19.94 2.43 0.00 18.50 27.35 9.06 6.92 5.27 4.97 9.19 8.73 1.30 0.00 3 289316 Transcript 0 141.61 122.96 157.63 131.29 91.64 27.84 138.54 53.25 48.13 286.25 96.73 41.28 46.94 146.29 297.26 78.48 36.86 18.66 83.14 118.44 86.07 35.19 12.87 4 IG40 Intergenic 0 2.75 0.77 8.99 1.87 3.47 0.10 7.95 0.98 2.09 5.73 9.51 7.38 1.67 3.11 7.19 1.61 2.32 0.50 1.90 1.38 3.33 1.80 1.43 5 IG40_AR1 ActiveIntergenicRegion 0 4.31 0.25 8.53 0.75 3.64 0.22 8.23 0.32 2.39 6.39 10.39 9.19 2.97 2.90 7.03 1.32 3.04 0.79 1.00 1.82 3.65 1.73 0.72 6 IG40_SR1 SilentIntergenicRegion 0 9.27 0.00 18.61 0.39 6.88 0.00 9.02 0.00 4.59 11.63 8.84 30.10 6.70 3.56 14.92 3.54 3.30 0.00 3.19 0.00 2.83 6.25 0.00 7 IG40_AR2 ActiveIntergenicRegion 0 0.72 0.10 9.79 2.43 3.00 0.00 6.09 1.60 2.68 3.94 7.43 16.53 2.40 2.77 3.36 1.63 2.17 0.00 0.35 0.00 1.26 1.25 1.83 8 IG40_AR3 ActiveIntergenicRegion 0 0.98 1.61 9.66 3.26 3.22 0.00 8.54 1.84 1.84 5.65 9.95 2.70 0.00 3.16 7.74 2.10 1.36 0.39 3.32 1.52 3.59 2.08 2.37 9 IG40_SR2 SilentIntergenicRegion 0 3.91 0.83 6.35 2.06 5.35 0.00 8.01 0.00 0.00 3.06 6.94 4.33 0.00 6.87 11.98 0.23 3.22 0.00 1.96 0.00 3.79 0.00 1.36 10 ER1a ExonRegion 1 58.44 57.98 206.50 102.92 62.43 27.39 128.91 54.12 61.58 214.19 162.75 52.56 30.54 153.53 353.10 160.85 98.72 45.67 137.86 126.01 156.22 34.66 24.63 11 E1_Da KnownBoundary 0 48.60 30.59 82.20 18.41 4.33 7.84 3.71 25.88 27.40 22.38 39.64 5.85 0.00 13.77 48.83 29.65 27.58 12.81 8.38 28.25 3.09 0.00 0.00 12 E1a_E2a KnownJunction 1 196.26 148.13 160.73 121.03 64.26 24.30 133.90 48.22 46.38 251.67 123.03 18.91 6.82 180.47 361.83 81.86 31.14 15.55 101.65 126.56 110.46 25.35 16.99 13 ER1b ExonRegion 0 27.33 7.56 29.21 3.97 2.38 1.10 3.63 9.65 11.63 8.84 19.94 2.43 0.00 18.50 27.35 9.06 6.92 5.27 4.97 9.19 8.73 1.30 0.00 14 E1_Db NovelBoundary 0 53.49 34.99 25.63 28.77 3.74 5.34 35.86 16.14 23.61 17.27 9.21 19.66 13.64 26.49 60.94 7.26 7.48 4.56 0.00 6.46 11.92 5.02 8.71 15 I1 Intron 0 16.39 16.44 28.17 22.36 11.55 3.24 13.93 9.54 12.51 13.56 5.29 5.83 7.26 3.59 15.63 5.38 4.79 5.09 10.79 7.43 5.19 0.75 2.53 16 I1_AR1 ActiveIntronRegion 0 8.76 14.07 35.77 15.83 7.89 3.80 10.66 15.30 23.91 17.53 9.51 9.63 8.55 4.49 29.19 8.68 9.88 8.19 13.40 10.15 9.39 1.02 2.51 17 I1_SR1 SilentIntronRegion 0 18.42 21.82 23.26 7.46 14.13 4.11 12.24 7.45 15.22 11.45 5.78 4.64 4.17 1.95 15.06 6.71 5.06 3.35 27.25 3.51 5.61 0.58 1.65 18 I1_AR2 ActiveIntronRegion 0 19.69 25.71 31.82 19.10 15.12 3.48 21.37 14.79 11.07 17.26 8.10 7.80 7.34 6.43 23.22 6.05 6.98 8.16 13.34 11.55 9.92 1.21 4.27 19 I1_AR3 ActiveIntronRegion 0 24.39 23.88 61.39 43.81 16.00 6.69 23.05 26.76 18.73 14.69 7.39 13.75 3.53 7.58 19.08 2.18 9.39 9.81 10.21 14.10 4.07 0.84 7.69 20 I1_SR2 SilentIntronRegion 0 75.18 33.80 53.95 43.24 16.83 0.98 14.31 13.05 17.41 22.99 8.67 8.86 13.62 3.99 19.76 6.99 4.13 7.96 9.04 9.31 4.74 0.13 3.18 21 I1_AR4 ActiveIntronRegion 0 21.33 25.02 36.98 26.93 19.54 3.71 21.42 8.32 14.69 16.27 4.67 5.90 9.14 3.62 15.79 8.58 5.10 7.23 16.46 6.54 6.26 1.62 2.67 22 I1_SR4 SilentIntronRegion 0 2.03 4.41 11.42 22.30 6.66 2.81 9.21 2.79 4.46 7.64 0.99 1.64 5.85 1.45 4.34 2.09 0.84 0.65 2.44 4.62 0.70 0.27 1.31 23 I1_AR2 ActiveIntronRegion 0 7.69 17.73 11.97 26.72 24.32 5.77 23.41 4.91 3.15 14.61 1.85 3.92 6.21 5.77 9.05 3.38 6.28 3.92 1.62 11.50 3.36 1.49 0.00 24 ER2a ExonRegion 0 86.96 97.79 154.52 141.56 119.02 31.38 143.18 58.29 49.88 320.83 70.43 63.66 87.06 112.12 232.69 75.10 42.59 21.77 64.63 110.33 61.68 45.04 8.76 25 IG41 Intergenic 0 11.34 61.37 51.98 40.26 42.67 5.65 41.03 13.78 8.97 61.47 2.15 4.89 6.59 5.68 9.88 4.54 3.26 5.00 14.03 20.94 3.61 2.10 1.25 26 IG41_SR1 SilentIntergenicRegion 0 8.41 93.62 100.27 91.47 99.66 24.03 99.92 29.81 18.30 160.61 6.20 11.53 19.92 12.15 18.05 4.86 9.30 4.10 36.69 65.60 8.47 4.19 2.90 27 IG41_AR1 ActiveIntergenicRegion 0 14.18 135.44 197.41 148.69 166.43 29.52 168.14 44.94 40.14 295.79 8.70 6.93 26.73 13.16 15.96 10.11 10.56 7.39 53.51 92.13 26.22 4.17 2.94 28 IG41_SR2 SilentIntergenicRegion 0 12.46 134.22 219.07 144.92 151.63 38.71 172.11 42.44 46.93 295.14 9.45 9.62 26.06 10.11 11.28 14.86 10.27 8.21 54.86 101.65 28.40 3.01 2.94 29 IG41_AR2 ActiveIntergenicRegion 0 16.66 125.77 136.44 114.69 68.43 21.20 79.30 43.49 29.95 228.52 3.08 7.66 12.39 11.10 16.99 8.92 13.43 17.26 68.13 88.83 16.65 4.95 4.81 30 IG41_SR3 SilentIntergenicRegion 0 10.44 47.02 73.93 48.98 39.50 11.95 45.49 19.59 15.55 90.67 6.38 4.95 4.78 16.45 19.08 10.45 11.69 21.97 46.27 39.30 13.35 5.22 5.18 31 IG41_AR3 ActiveIntergenicRegion 0 48.12 200.25 147.75 79.11 154.78 14.71 131.27 30.14 17.85 132.29 2.59 14.78 12.73 11.26 8.85 6.46 1.66 7.37 19.17 51.58 1.84 5.57 0.98 32 IG41_AR4 ActiveIntergenicRegion 0 39.84 176.26 165.39 134.00 144.65 10.12 103.41 38.25 21.51 139.24 3.06 6.83 13.78 8.54 14.91 5.70 2.74 4.26 12.21 40.43 1.51 4.19 0.70 33 IG41_AR5 ActiveIntergenicRegion 0 9.17 139.81 33.70 44.29 32.11 0.00 35.86 18.15 7.41 35.65 4.51 6.85 13.68 1.62 4.84 0.00 9.90 6.62 14.60 15.60 2.20 2.08 0.00 34 IG41_AR6 ActiveIntergenicRegion 0 15.27 118.67 34.49 40.98 42.05 1.83 57.69 16.79 6.44 31.70 3.45 8.66 6.70 1.28 5.80 2.55 6.84 4.62 12.29 6.38 1.26 2.08 0.00 35 IG41_SR4 SilentIntergenicRegion 0 6.13 43.60 18.38 15.87 27.85 2.74 34.87 10.02 1.24 13.32 0.10 1.47 3.82 1.16 0.64 4.53 3.52 2.10 2.11 0.83 0.00 4.13 0.00 36 IG41_AR8 ActiveIntergenicRegion 0 11.89 113.76 15.99 16.43 21.64 1.65 24.99 7.52 4.55 28.80 0.43 4.01 0.00 1.48 3.57 4.01 0.00 0.83 7.87 9.56 0.99 0.00 0.00 37 IG41_AR9 ActiveIntergenicRegion 0 0.86 12.38 7.39 12.34 7.58 4.45 6.97 0.00 2.23 20.04 0.00 5.77 1.90 3.63 0.83 0.00 1.34 1.11 0.00 8.61 0.00 0.84 0.00 38 IG41_SR5 SilentIntergenicRegion 0 5.24 51.16 9.46 9.20 12.29 4.35 6.81 3.25 2.10 13.51 0.37 5.48 1.84 1.71 3.05 0.14 0.00 0.00 1.27 3.40 0.42 0.79 0.56 39 IG41_AR10 ActiveIntergenicRegion 0 10.79 109.14 24.31 29.91 20.42 3.45 17.48 8.64 6.90 39.08 1.74 5.88 2.15 1.49 11.01 3.45 0.99 0.97 2.34 7.85 0.66 0.00 0.88 40 IG41_SR6 SilentIntergenicRegion 0 1.37 4.79 8.84 7.39 10.68 0.07 16.71 2.87 1.81 13.77 1.08 2.63 5.14 2.33 7.09 2.81 0.80 0.70 1.71 2.57 0.98 0.58 0.22