Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 BTN3A1 Gene 0 380.68 21.33 63.47 47.57 114.64 300.52 23.34 71.17 137.68 15.89 44.51 102.34 90.83 126.54 87.09 110.70 76.23 19.96 9.32 16.47 61.34 43.27 41.17 2 396934 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 425234 Transcript 0 125.39 10.82 19.27 18.71 44.47 116.79 9.27 27.65 54.49 5.81 17.68 47.81 28.15 64.28 37.45 51.61 29.09 13.16 3.67 5.14 19.03 12.43 15.04 4 414912 Transcript 0 45.79 7.70 22.44 25.14 20.88 78.14 11.57 21.77 67.79 5.35 15.32 51.77 49.35 54.27 22.75 36.06 58.44 13.85 0.00 7.48 41.95 14.08 9.73 5 465690 Transcript 1 73.23 2.15 7.56 7.55 34.74 54.14 15.82 19.05 60.38 2.12 9.87 44.14 53.72 30.31 8.31 27.29 22.87 1.42 1.17 4.31 10.80 20.49 9.44 6 427334 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 82468 Transcript 0 78.04 1.13 13.51 3.58 39.15 44.97 4.33 13.77 20.53 1.68 17.90 36.99 49.40 41.89 18.16 34.50 25.47 1.39 5.78 5.20 11.02 4.89 8.20 8 289361 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 476549 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.05 0.00 0.00 0.00 5.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 450085 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 IG15_AR1 ActiveIntergenicRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.50 0.00 0.00 0.00 0.00 0.00 0.00 12 ER1a ExonRegion 0 1.97 0.00 0.00 0.00 0.00 1.31 0.00 0.86 0.88 0.00 1.24 0.00 0.00 2.09 0.00 6.79 0.94 0.00 0.00 0.00 0.00 1.64 0.00 13 ER1b ExonRegion 0 2.91 0.00 0.00 0.34 0.67 3.21 0.00 2.59 1.39 0.00 1.93 0.00 0.00 4.47 0.00 8.92 4.13 0.00 0.00 0.53 0.00 2.08 0.00 14 ER1c ExonRegion 1 206.11 13.87 5.20 12.62 83.91 362.98 41.12 19.70 37.94 3.65 31.16 0.17 0.00 141.82 35.40 70.14 72.42 9.28 10.38 18.17 22.17 16.92 28.49 15 E1_Ad KnownBoundary 1 592.85 34.27 12.95 25.54 234.89 893.63 127.06 39.35 83.22 8.70 83.13 16.06 6.17 278.83 81.22 153.98 155.59 23.50 22.02 41.35 67.89 41.88 101.67 16 ER1d ExonRegion 1 409.64 35.59 18.67 29.89 211.97 763.02 103.93 56.40 126.30 15.68 84.33 22.21 48.63 176.82 52.47 148.74 109.22 28.20 20.36 31.73 85.18 52.36 102.78 17 E1_Ae KnownBoundary 0 468.68 69.66 21.02 24.71 279.97 753.26 86.65 63.09 156.94 19.50 94.39 81.63 111.19 120.96 53.03 167.65 76.86 16.29 31.25 31.19 85.50 88.30 123.35 18 ER1e ExonRegion 0 186.44 29.73 18.74 17.65 89.55 328.00 23.95 44.94 118.89 12.44 41.19 96.52 63.80 37.49 18.81 82.04 52.47 14.34 14.11 17.86 44.80 49.18 47.04 19 E1a_E2a KnownJunction 0 0.00 2.76 0.00 0.00 0.00 0.00 0.00 2.55 3.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 E1a_E3a KnownJunction 1 37.41 18.68 15.49 6.09 3.57 26.86 1.90 17.33 37.50 1.61 14.00 30.31 6.82 27.31 10.75 7.69 62.09 2.03 0.00 20.90 16.06 5.14 3.93 21 E1a_E3b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.05 0.00 0.00 0.00 5.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22 I1 Intron 0 48.30 2.37 5.22 5.21 36.69 70.19 13.14 10.07 26.53 2.29 9.70 47.10 65.82 23.98 10.65 23.07 16.37 1.88 1.49 3.72 9.77 12.39 11.82 23 I1_AR1 ActiveIntronRegion 0 30.15 2.86 7.06 3.57 57.88 115.13 23.75 9.97 26.22 2.10 6.79 16.57 29.94 20.33 10.29 17.77 13.35 2.59 1.68 4.86 12.79 6.23 12.39 24 I1_SR1 SilentIntronRegion 0 57.51 2.14 4.32 6.05 26.26 48.04 7.89 10.16 26.77 2.40 11.18 62.47 83.93 25.87 10.86 25.79 17.93 1.53 1.40 3.17 8.30 15.50 11.58 25 E2_Aa NovelBoundary 1 346.28 13.16 12.24 13.75 108.40 236.06 21.42 36.47 70.34 2.79 25.01 95.88 180.02 56.86 31.77 54.43 49.93 8.33 0.00 9.78 57.02 32.39 12.46 26 ER2a ExonRegion 1 30.47 3.94 2.42 3.03 19.42 52.21 6.41 8.68 39.54 4.87 5.49 50.84 52.15 36.04 7.96 27.64 12.96 1.83 0.00 2.29 15.88 9.52 16.80 27 E2_Da KnownBoundary 0 142.40 8.75 9.73 9.16 44.31 125.44 29.81 17.54 70.17 6.42 4.84 55.97 39.45 59.39 15.20 78.01 35.25 1.82 0.00 12.27 21.75 30.13 31.58 28 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29 ER2b ExonRegion 0 73.23 2.15 7.56 7.55 34.74 54.14 15.82 19.05 60.38 2.12 9.87 44.14 53.72 30.31 8.31 27.29 22.87 1.42 1.17 4.31 10.80 20.49 9.44 30 E2_Db NovelBoundary 0 61.64 0.00 7.48 16.31 26.32 56.90 28.26 19.51 71.67 4.32 17.53 62.72 55.84 30.67 4.45 15.12 16.55 2.07 0.00 5.50 11.31 14.33 7.00 31 I2 Intron 0 30.77 1.41 2.95 3.51 16.99 36.61 6.42 8.03 28.88 0.79 9.14 34.67 27.19 28.30 5.77 22.98 15.23 1.91 1.10 2.21 17.55 5.77 5.42 32 I2_AR1 ActiveIntronRegion 1 30.91 1.41 2.96 3.53 17.06 36.77 6.45 8.07 29.01 0.79 9.19 34.83 27.31 28.42 5.80 23.07 15.30 1.92 1.11 2.22 17.63 5.79 5.45 33 E3_Aa NovelBoundary 0 88.53 0.00 15.76 23.47 27.42 55.76 27.65 32.12 63.69 1.48 22.16 42.31 33.93 56.04 14.59 30.93 22.07 6.14 13.27 5.50 16.56 20.64 8.54 34 ER3a ExonRegion 0 64.00 9.04 32.98 29.62 42.03 141.22 11.03 65.65 143.98 17.18 68.31 129.02 69.03 153.07 57.31 120.21 100.28 15.72 13.56 27.21 83.97 63.58 52.71 35 E3_Ab KnownBoundary 1 69.35 6.58 37.20 30.17 119.86 422.14 23.36 54.34 117.39 16.92 39.33 176.91 60.06 114.13 34.49 59.39 67.51 8.42 13.93 32.09 87.54 55.97 28.17 36 E3_Ac KnownBoundary 1 105.50 15.19 22.86 20.64 83.53 504.14 50.48 59.02 118.69 11.58 56.75 49.67 64.12 128.79 33.01 87.07 49.56 17.33 9.04 22.05 71.11 26.94 25.69 37 ER3b ExonRegion 0 83.89 11.92 38.04 32.34 107.03 534.14 41.76 72.05 157.48 18.25 60.18 146.41 68.65 135.47 45.76 84.71 74.72 19.91 15.49 30.37 103.47 48.30 31.50 38 ER3c ExonRegion 1 113.56 16.51 39.75 31.54 63.77 417.08 27.72 68.99 132.66 14.83 60.15 139.63 55.22 150.02 61.27 125.57 87.12 26.07 12.06 20.44 93.97 37.08 39.23 39 E3a_E4a KnownJunction 0 246.04 26.18 35.63 34.73 54.50 198.41 23.76 69.78 128.15 19.88 43.01 126.49 79.22 148.80 62.92 127.74 134.83 36.85 4.80 28.19 114.47 41.03 41.66 40 ER4a ExonRegion 0 175.24 33.23 34.28 24.90 44.21 129.12 11.77 50.56 117.31 18.09 39.27 82.56 69.07 115.16 40.88 84.37 70.37 24.78 6.01 23.16 77.63 29.64 27.70 41 E4_Da KnownBoundary 1 74.68 16.90 38.26 20.54 78.35 197.16 15.24 85.76 99.65 26.81 21.79 5.70 19.48 57.33 10.75 84.25 23.75 11.23 4.33 22.31 35.89 35.82 3.93 42 E4_Db KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43 ER4b ExonRegion 0 116.41 32.54 29.41 19.08 24.08 78.85 9.27 38.03 97.57 12.62 25.13 38.97 46.90 82.83 34.82 65.39 36.31 11.09 6.37 14.89 46.28 27.09 17.62 44 ER4c ExonRegion 0 69.47 6.98 21.02 24.42 13.86 124.29 8.06 31.80 70.93 7.12 23.13 30.45 26.07 80.91 45.44 74.57 43.41 24.49 8.04 19.26 33.42 26.05 28.16 45 E4c_E5a KnownJunction 0 65.34 0.00 32.41 25.30 19.69 77.80 7.73 43.87 109.26 7.90 38.06 31.81 26.62 85.70 65.15 70.24 68.44 13.76 3.67 20.96 67.34 33.68 19.72 46 E4c_E5b KnownJunction 0 45.79 7.70 22.44 25.14 20.88 78.14 11.57 21.77 67.79 5.35 15.32 51.77 49.35 54.27 22.75 36.06 58.44 13.85 0.00 7.48 41.95 14.08 9.73 47 I4 Intron 0 14.36 1.08 5.23 3.66 7.09 35.97 2.11 10.38 24.97 1.27 4.71 12.66 19.28 28.24 5.45 24.58 17.85 4.68 0.68 3.16 3.27 5.96 5.29 48 I4_SR1 SilentIntronRegion 0 14.48 1.09 5.27 3.69 7.15 36.27 2.12 10.47 25.18 1.28 4.75 12.77 19.35 28.48 5.49 24.79 18.00 4.71 0.68 3.18 3.30 6.01 5.34 49 E5_Aa NovelBoundary 1 87.94 5.59 17.39 6.86 36.25 134.41 8.26 16.55 60.47 4.94 8.74 42.01 46.26 79.23 24.60 29.48 33.94 12.97 0.00 8.18 13.47 0.00 7.51 50 ER5a ExonRegion 0 105.85 9.00 58.59 41.95 42.01 222.75 15.36 69.06 161.71 12.87 46.19 84.66 87.59 133.61 73.46 140.92 99.80 35.65 16.27 17.62 86.49 53.92 60.70 51 E5_Ab KnownBoundary 0 168.47 11.77 59.87 41.75 64.01 305.39 33.34 62.35 185.50 13.08 61.49 148.55 116.39 168.11 96.42 118.17 123.05 31.01 0.00 20.01 106.26 50.76 32.95 52 ER5b ExonRegion 0 116.80 10.57 48.52 41.52 52.66 241.59 13.78 52.60 139.31 11.88 37.20 74.95 67.87 153.64 74.25 96.99 97.02 25.54 3.98 19.22 97.83 36.40 38.86 53 E5a_E6a KnownJunction 0 76.38 0.00 32.26 22.37 19.10 66.61 4.50 33.15 84.06 8.76 12.48 43.51 13.47 53.74 14.09 39.56 49.56 11.40 0.00 6.39 43.92 9.31 35.77 54 I5 Intron 0 59.01 2.04 4.28 4.36 28.70 77.06 4.79 13.81 20.48 2.75 6.47 17.46 25.15 25.19 9.20 17.13 9.07 1.48 0.43 1.71 9.00 4.19 3.94 55 I5_AR1 ActiveIntronRegion 1 30.54 2.01 1.44 6.02 16.93 64.52 6.80 7.64 22.19 0.68 9.55 11.58 32.07 36.52 10.05 18.20 9.79 0.54 0.00 2.52 11.32 5.77 4.05 56 I5_SR1 SilentIntronRegion 0 81.22 2.31 5.47 3.57 34.76 69.54 3.65 15.41 19.57 3.89 5.02 20.54 22.57 13.89 7.51 14.30 7.25 1.71 0.80 0.98 6.34 3.52 3.55 57 I5_AR2 ActiveIntronRegion 0 43.42 1.07 6.96 3.29 35.34 143.28 4.27 23.86 20.12 3.55 4.46 20.62 18.03 42.63 14.12 26.35 14.94 3.03 0.00 2.61 14.11 2.86 5.30 58 E6_Aa NovelBoundary 0 96.09 8.42 8.52 13.68 56.88 166.04 15.85 14.62 28.21 14.88 0.00 5.85 6.82 41.03 4.70 24.27 11.87 0.00 0.00 8.50 8.65 5.02 3.33 59 ER6a ExonRegion 0 271.24 20.36 61.70 49.02 80.99 341.88 19.37 65.74 149.90 20.20 48.26 123.47 87.48 171.66 87.11 128.94 85.18 21.51 10.05 23.19 95.01 39.22 57.51 60 E6_Da NovelBoundary 0 10.22 0.00 0.00 1.60 0.00 0.00 0.00 5.09 7.03 0.00 4.63 0.00 0.00 7.00 8.90 4.36 13.00 6.88 14.31 0.00 0.00 3.12 4.35 61 E6a_E7a KnownJunction 1 303.61 22.63 52.22 40.19 108.91 278.19 19.08 55.74 120.57 16.06 55.86 136.99 74.35 112.13 58.59 145.69 21.41 20.56 8.38 26.01 77.28 29.27 77.25 62 E7a_E7b KnownJunction 0 258.12 2.96 41.78 45.82 69.78 244.92 14.35 56.11 124.33 14.75 40.69 88.23 46.75 113.01 78.62 63.83 72.84 14.76 4.80 22.37 94.95 21.06 12.46 63 ER7a ExonRegion 0 325.04 15.98 69.90 62.17 117.10 336.98 17.97 81.32 183.97 19.99 67.47 156.69 97.82 165.81 95.47 148.89 66.49 24.99 11.22 30.60 112.39 38.30 62.37 64 ER7b ExonRegion 0 78.04 1.13 13.51 3.58 39.15 44.97 4.33 13.77 20.53 1.68 17.90 36.99 49.40 41.89 18.16 34.50 25.47 1.39 5.78 5.20 11.02 4.89 8.20 65 ER7c ExonRegion 0 307.06 17.68 69.19 51.84 105.90 289.74 18.03 78.84 186.60 16.94 69.29 139.54 117.97 144.98 105.45 111.91 75.92 16.91 15.56 21.69 103.66 35.02 29.25 66 ER8a ExonRegion 0 355.73 24.63 80.19 60.02 117.14 352.29 20.50 88.28 211.94 23.58 78.18 172.54 149.91 179.31 108.64 148.94 88.64 17.11 14.63 16.86 110.27 43.29 61.78 67 ER9a ExonRegion 0 392.89 19.28 78.61 69.05 94.54 383.13 24.08 107.74 222.37 24.38 81.40 165.32 159.29 204.64 103.91 172.38 107.71 23.06 20.88 19.31 108.96 74.78 78.42 68 I9 Intron 0 54.82 3.09 8.84 8.19 22.06 53.58 4.98 11.08 22.43 3.06 11.43 21.91 21.44 34.55 14.88 28.51 18.34 6.84 3.15 2.48 6.71 1.31 3.16 69 I9_AR1 ActiveIntronRegion 0 54.92 3.10 8.85 8.20 22.10 53.67 4.99 11.10 22.47 3.07 11.45 21.95 21.48 34.61 14.91 28.56 18.37 6.85 3.15 2.48 6.72 1.31 3.16 70 E10_Aa NovelBoundary 1 155.88 6.18 22.41 30.37 73.51 130.61 23.54 30.97 35.88 15.98 26.27 31.96 18.99 60.80 15.95 118.94 38.06 11.15 9.51 3.26 33.73 3.12 26.12 71 ER10a ExonRegion 0 90.14 10.70 11.47 16.85 29.67 87.72 7.57 24.69 39.46 6.27 9.45 18.01 12.91 42.93 19.39 35.58 16.81 8.61 3.19 4.26 11.83 8.23 8.57 72 E10_Ab KnownBoundary 0 114.69 3.35 19.28 4.03 79.97 101.82 6.27 18.52 26.13 3.33 10.00 0.00 20.94 33.37 11.00 38.79 13.37 6.59 0.00 0.00 6.30 6.25 13.06 73 ER10b ExonRegion 0 173.98 7.02 38.91 41.53 104.62 211.12 19.76 63.05 78.46 12.01 33.29 82.91 47.49 102.32 54.11 75.57 36.06 12.84 3.82 5.80 21.60 20.00 16.81 74 E10_Da KnownBoundary 0 277.60 9.54 48.55 66.49 219.44 280.86 28.00 57.79 97.83 8.25 52.22 131.74 136.19 251.99 154.65 183.88 89.01 12.10 13.93 6.26 43.74 24.86 42.77 75 E10_Db KnownBoundary 0 464.30 11.38 68.42 52.64 274.11 298.46 33.96 108.60 179.11 27.43 82.97 296.35 154.54 289.84 284.07 317.35 159.23 13.39 16.85 14.38 94.33 83.16 97.48 76 ER10c ExonRegion 1 148.64 8.32 26.35 40.39 77.11 186.71 17.99 47.85 79.44 7.77 23.28 91.12 23.66 81.21 69.89 65.12 33.01 11.59 3.19 3.09 27.85 17.99 15.75 77 ER10d ExonRegion 0 160.64 10.95 27.07 20.57 59.27 145.85 10.96 30.61 69.51 5.34 25.91 77.61 43.40 85.62 55.51 67.63 41.37 17.72 4.15 6.01 26.24 16.63 21.51 78 E10_Ac KnownBoundary 1 214.04 9.54 27.29 24.11 66.89 170.98 13.65 23.91 78.59 3.76 35.32 24.16 38.47 96.12 30.04 36.32 33.38 17.78 0.00 16.30 28.85 7.47 37.73 79 ER10e ExonRegion 0 701.44 34.63 108.19 76.22 196.18 453.14 33.87 110.19 196.49 24.16 60.62 144.44 140.72 166.60 139.10 152.41 104.79 24.65 11.97 20.36 80.00 62.80 54.53 80 ER10f ExonRegion 1 43.92 5.59 4.90 2.73 17.39 17.88 7.28 5.62 3.40 2.01 0.00 0.00 21.11 3.25 12.33 2.97 14.03 0.00 0.00 0.00 1.10 0.00 0.00 81 ER10g ExonRegion 0 5.03 2.54 1.68 0.00 3.68 8.02 3.48 0.86 0.00 1.00 0.00 0.00 0.59 1.02 5.80 0.00 2.89 0.00 0.00 0.00 0.00 0.00 0.00