Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AL445309.1 Gene 0 15.72 15.40 12.85 18.77 28.22 14.11 16.21 27.36 13.89 33.95 12.76 5.00 10.47 5.80 16.35 7.70 7.82 9.45 15.02 23.68 9.96 8.27 22.74 2 499159 Transcript 0 7.31 7.79 11.39 11.51 14.25 11.00 12.52 15.28 8.37 23.56 4.67 1.83 4.15 2.12 6.39 2.82 2.86 10.35 10.44 18.39 3.64 3.03 8.32 3 ER1a ExonRegion 0 5.17 7.15 22.23 15.45 13.04 19.40 21.89 17.51 10.94 37.02 0.00 0.00 1.05 0.00 1.34 0.00 0.00 22.91 16.42 32.32 0.00 0.00 0.00 4 E1_Da NovelBoundary 0 0.00 3.03 43.43 21.24 16.38 38.33 20.93 31.71 17.68 34.11 0.00 0.00 0.00 0.00 4.45 0.00 0.00 42.66 21.27 84.75 0.00 0.00 0.00 5 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 I1 Intron 0 3.58 24.62 19.13 17.93 37.45 23.20 21.31 26.01 18.02 34.02 0.03 0.09 0.08 0.03 0.13 0.03 0.04 19.98 15.34 32.90 0.06 0.08 0.10 7 I1_SR1 SilentIntronRegion 0 0.00 2.31 4.99 1.64 3.47 5.67 7.82 3.89 5.11 11.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.93 1.95 23.89 0.00 0.00 0.00 8 I1_AR2 ActiveIntronRegion 0 0.61 8.45 5.42 5.82 31.30 26.68 15.11 17.95 12.64 34.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37.29 38.64 46.54 0.32 0.00 0.00 9 I1_SR2 SilentIntronRegion 0 5.69 38.48 31.77 29.57 63.06 43.11 31.38 35.37 20.93 42.04 0.00 0.00 0.19 0.00 0.21 0.00 0.00 24.40 16.99 43.37 0.00 0.16 0.00 10 I1_AR3 ActiveIntronRegion 0 8.03 44.35 59.63 42.92 38.33 53.61 21.12 39.21 28.76 60.14 0.31 0.98 0.00 0.61 0.42 0.00 1.58 50.32 18.56 61.20 0.00 0.74 0.00 11 I1_SR3 SilentIntronRegion 0 4.35 30.67 17.22 14.23 31.93 35.96 12.90 15.76 10.84 19.09 0.00 0.00 0.00 0.51 1.96 0.00 0.00 12.26 14.69 29.63 0.00 0.00 0.00 12 I1_AR4 ActiveIntronRegion 0 6.78 44.20 31.61 33.45 41.28 35.23 24.20 34.04 28.18 53.91 0.22 0.41 0.00 0.02 0.00 0.34 0.00 24.54 12.33 45.58 0.00 0.00 0.00 13 I1_SR4 SilentIntronRegion 0 4.37 29.74 32.86 31.53 53.12 17.53 46.06 28.22 34.93 45.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.42 22.51 61.60 0.00 0.00 0.00 14 I1_AR5 ActiveIntronRegion 0 10.58 35.25 31.25 42.25 53.07 23.84 45.46 27.37 39.52 40.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.17 7.43 62.06 0.00 0.00 0.00 15 I1_SR5 SilentIntronRegion 0 4.85 33.55 19.64 26.56 46.59 28.01 38.56 38.24 23.66 39.70 0.00 1.09 0.00 0.00 0.00 0.00 0.00 13.28 19.51 45.90 0.00 0.00 0.00 16 I1_AR6 ActiveIntronRegion 0 3.39 33.77 12.64 17.62 36.06 19.65 23.51 26.39 20.57 35.50 0.00 0.00 1.16 0.00 0.00 0.00 0.00 16.92 21.43 36.55 0.00 0.00 0.00 17 I1_SR6 SilentIntronRegion 0 1.65 19.31 12.24 14.29 35.55 19.82 23.32 28.97 22.92 29.10 0.00 0.00 0.00 0.00 0.09 0.00 0.00 16.08 13.63 27.03 0.00 0.07 0.00 18 I1_AR7 ActiveIntronRegion 0 1.44 12.27 9.64 7.86 38.04 16.96 22.78 22.98 26.89 32.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.31 14.49 25.61 0.00 0.00 0.00 19 I1_SR7 SilentIntronRegion 0 5.83 29.06 11.53 11.18 37.38 20.77 25.67 29.36 21.54 31.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.14 13.92 27.69 0.00 0.00 0.00 20 I1_AR9 ActiveIntronRegion 0 0.81 18.38 11.97 6.74 14.87 3.46 11.38 11.60 19.90 19.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.17 18.07 14.69 0.00 0.00 0.00 21 I1_SR9 SilentIntronRegion 0 2.63 14.21 18.20 14.68 30.91 10.54 16.94 22.58 15.65 30.50 0.00 0.00 0.00 0.00 0.22 0.00 0.00 21.42 16.82 26.86 0.12 0.00 0.47 22 I1_AR10 ActiveIntronRegion 0 3.20 14.36 17.11 15.73 24.02 7.37 11.91 16.55 7.93 28.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.73 15.42 28.15 0.00 0.00 0.35 23 I1_SR10 SilentIntronRegion 0 1.59 11.42 9.15 6.35 17.96 6.14 9.90 14.46 7.48 23.29 0.00 0.00 0.00 0.03 0.04 0.00 0.00 16.02 11.00 20.17 0.18 0.09 0.24 24 I1_AR11 ActiveIntronRegion 0 2.02 2.71 0.64 6.39 10.26 4.28 9.93 3.17 3.44 16.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.79 7.13 8.97 0.00 0.00 0.00 25 Ix Intron 0 6.50 16.87 20.85 19.73 14.71 9.45 18.30 23.80 15.08 45.02 15.22 9.47 10.51 18.75 12.70 16.87 12.22 37.99 18.47 41.95 8.00 3.06 7.85 26 Ix_SR1 SilentIntronRegion 0 6.15 17.47 18.71 18.78 15.18 9.37 18.58 22.85 14.74 43.06 14.16 9.31 9.70 17.75 12.35 16.24 12.10 32.83 17.04 40.60 7.45 2.69 7.43 27 Ix_AR1 ActiveIntronRegion 0 9.44 12.11 38.38 27.57 11.02 10.17 16.20 31.68 17.98 61.17 23.91 10.88 17.11 26.92 15.58 22.08 13.24 80.01 30.16 53.11 12.47 6.05 11.24 28 I1 Intron 0 7.98 34.18 22.30 19.48 32.47 9.92 23.45 11.83 8.60 29.85 4.28 3.76 7.17 5.68 6.24 5.36 5.15 16.34 12.80 34.02 3.61 1.20 3.85 29 I1_SR1 SilentIntronRegion 0 9.13 32.08 16.84 19.47 29.19 9.17 26.15 8.63 10.18 28.71 4.00 6.97 10.39 4.65 6.18 2.35 5.76 13.55 15.88 36.82 3.45 0.83 1.85 30 I1_AR1 ActiveIntronRegion 0 7.45 35.38 25.11 19.58 34.25 10.34 22.22 13.45 7.86 30.57 4.44 2.19 5.62 6.21 6.30 6.88 4.87 17.81 11.34 32.79 3.71 1.38 4.86 31 Ix Intron 0 6.12 8.22 9.42 14.48 13.28 4.70 8.74 11.43 6.41 21.17 3.11 1.29 5.06 2.35 5.17 4.00 2.06 10.23 9.84 16.29 2.61 2.46 10.71 32 Ix_SR1 SilentIntronRegion 0 6.13 8.23 9.43 14.50 13.29 4.71 8.76 11.44 6.42 21.20 3.12 1.29 5.07 2.36 5.17 4.01 2.06 10.25 9.85 16.31 2.61 2.47 10.72 33 Ix Intron 0 7.15 9.66 9.90 18.81 30.34 6.33 9.49 17.96 10.83 28.67 4.82 2.30 5.32 2.49 6.40 2.07 1.65 8.54 10.66 15.32 3.16 2.64 11.11 34 Ix_SR1 SilentIntronRegion 0 7.59 10.53 17.17 24.74 31.75 7.25 10.36 20.45 11.91 32.36 5.63 3.31 5.93 3.89 6.67 2.96 2.22 11.85 12.86 21.41 4.15 2.29 9.27 35 Ix_AR1 ActiveIntronRegion 0 11.77 8.13 9.39 16.02 39.15 10.02 11.98 15.64 7.42 22.10 3.44 0.53 5.35 2.42 6.98 2.21 1.68 6.89 5.99 10.89 3.24 3.80 9.88 36 Ix_AR5 ActiveIntronRegion 0 5.11 4.91 4.90 12.61 24.08 5.50 6.29 21.89 6.79 19.21 5.32 1.44 6.25 1.35 2.90 0.00 0.00 3.70 1.33 20.57 0.00 2.08 2.94 37 Ix_SR4 SilentIntronRegion 0 8.33 5.34 4.90 16.95 25.42 5.27 7.45 25.49 12.43 21.00 5.80 4.33 10.85 1.62 2.54 0.00 0.00 3.81 3.19 20.61 1.10 3.13 12.66 38 Ix_AR6 ActiveIntronRegion 0 8.89 7.32 6.13 24.80 18.20 3.67 5.12 32.03 16.63 24.54 6.57 4.33 9.38 1.62 2.90 0.00 0.00 7.39 3.19 17.30 2.20 2.08 12.53 39 Ix_AR7 ActiveIntronRegion 0 8.89 6.10 8.15 25.28 36.86 6.23 3.81 19.57 13.90 19.90 12.23 5.41 7.74 3.57 6.09 0.00 0.00 5.31 4.30 19.47 1.93 3.44 11.38 40 Ix_AR8 ActiveIntronRegion 0 22.61 33.74 6.75 23.06 63.77 7.87 19.39 22.14 11.70 24.42 6.58 3.39 9.35 1.08 7.88 0.68 0.00 2.30 4.91 16.47 2.26 1.32 7.47 41 Ix_AR9 ActiveIntronRegion 0 20.72 17.88 5.16 15.56 77.15 13.07 16.94 19.37 13.64 30.68 5.56 8.12 10.75 2.30 4.11 1.49 0.00 3.70 0.00 3.63 1.74 2.00 7.34 42 Ix_AR10 ActiveIntronRegion 0 14.30 15.71 6.51 19.93 66.62 11.95 9.86 20.56 14.44 32.59 7.20 4.33 16.82 3.25 5.40 0.00 1.82 3.95 0.00 16.43 0.00 4.67 3.54 43 Ix_AR11 ActiveIntronRegion 0 12.40 10.76 8.03 26.21 36.85 7.74 10.34 27.61 15.78 37.69 4.81 5.45 15.07 1.85 10.12 1.47 1.01 5.30 7.83 18.56 1.35 2.08 12.81 44 Ix_AR12 ActiveIntronRegion 0 8.40 12.39 11.37 9.50 111.38 6.13 15.64 19.45 15.63 48.31 7.31 13.53 4.54 4.42 3.54 3.99 5.26 4.56 7.27 13.70 1.58 5.01 9.54 45 Ix_AR13 ActiveIntronRegion 0 13.87 18.03 10.34 23.29 39.44 6.76 12.07 27.04 19.42 46.57 4.78 4.00 9.22 5.20 9.92 2.76 1.89 16.42 20.72 20.03 3.07 2.55 15.77 46 Ix_AR14 ActiveIntronRegion 0 2.12 4.75 10.21 7.84 13.82 3.67 0.00 14.98 9.47 30.01 1.45 3.97 9.38 4.20 5.08 2.97 3.03 15.40 1.33 4.43 0.73 2.08 16.64 47 Ix_SR5 SilentIntronRegion 0 4.47 8.25 7.68 15.28 25.55 5.68 8.14 15.09 9.74 28.40 3.94 1.01 4.24 1.27 6.45 1.75 1.94 8.23 9.45 13.11 3.26 2.86 12.26 48 Ix_AR15 ActiveIntronRegion 0 6.39 9.91 5.19 19.15 39.01 0.83 13.91 13.43 13.07 32.73 3.60 6.70 0.00 2.62 5.59 4.57 0.00 6.79 14.18 9.92 4.92 3.64 13.04 49 Ix_SR6 SilentIntronRegion 0 4.77 5.52 5.59 16.84 19.42 4.62 7.48 18.22 10.55 24.48 5.69 1.79 3.31 2.73 5.24 1.61 0.89 6.66 14.38 11.74 2.22 2.65 13.64 50 Ix Intron 0 3.84 2.55 7.09 8.77 9.88 5.51 4.73 12.09 6.22 22.78 7.86 1.50 2.45 1.50 8.59 1.30 1.65 9.37 8.57 7.46 4.69 2.48 14.33 51 Ix_SR1 SilentIntronRegion 0 2.39 2.48 9.04 8.70 12.10 4.80 4.35 13.82 6.95 24.62 13.08 1.86 0.83 1.49 8.00 1.55 1.66 8.34 8.50 12.61 7.11 2.04 15.91 52 Ix_AR1 ActiveIntronRegion 0 5.04 4.32 8.22 11.94 12.31 5.80 6.23 14.00 6.06 25.93 4.95 1.68 2.44 1.24 8.83 1.02 1.72 12.93 14.11 9.30 3.50 4.87 15.63 53 Ix_AR2 ActiveIntronRegion 0 3.97 1.09 5.20 6.45 6.32 6.08 3.91 9.71 6.22 19.84 7.51 1.20 3.42 1.78 9.29 1.50 1.70 7.31 3.81 2.76 4.53 0.70 13.04 54 Ix Intron 0 3.63 1.74 1.57 5.22 9.17 10.22 2.84 7.73 3.16 12.45 14.91 3.06 1.66 3.28 7.31 2.55 0.00 1.18 4.10 3.65 5.65 2.68 22.65 55 Ix_SR1 SilentIntronRegion 0 3.69 1.77 1.59 5.31 9.33 10.39 2.89 7.86 3.21 12.66 15.17 3.11 1.68 3.33 7.44 2.59 0.00 1.20 4.17 3.71 5.74 2.72 22.99 56 Ix Intron 0 4.79 2.89 5.53 8.65 14.77 7.11 4.47 11.56 7.84 24.13 4.52 1.40 3.07 1.75 7.24 2.28 1.39 6.90 7.70 10.53 3.04 4.32 14.75 57 Ix_SR1 SilentIntronRegion 0 3.11 2.49 4.40 7.42 7.37 6.04 2.40 13.08 8.06 26.82 5.72 1.00 3.08 1.84 7.89 2.09 0.98 7.57 7.01 10.43 2.16 2.33 13.50 58 Ix_AR1 ActiveIntronRegion 0 5.16 2.33 7.18 8.16 18.26 6.71 4.51 7.05 8.08 21.12 3.64 1.72 2.74 1.59 7.90 3.58 1.45 6.12 7.13 11.89 3.67 6.94 20.17 59 Ix_AR2 ActiveIntronRegion 0 7.01 4.28 5.22 11.31 22.14 9.38 7.77 15.11 7.20 23.91 3.78 1.61 3.49 1.81 5.39 0.89 1.99 6.91 9.57 8.96 3.65 4.07 9.72 60 E2_Aa NovelBoundary 0 6.52 12.76 13.75 14.32 56.37 9.31 8.04 16.84 12.12 34.20 5.16 0.00 13.64 9.59 11.50 3.85 0.00 15.50 4.80 15.28 5.62 3.12 15.71 61 ER2a ExonRegion 0 16.75 16.21 11.94 19.09 29.71 13.59 15.65 28.32 14.18 33.65 14.01 5.49 11.40 6.37 17.82 8.45 8.59 8.13 14.89 22.83 10.93 9.08 24.96