Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CDKAL1 Gene 0 41.02 62.30 35.43 35.08 88.22 50.96 46.91 55.80 33.53 103.25 67.45 71.05 77.81 78.30 77.72 91.22 84.93 52.56 46.95 65.56 27.15 32.00 35.62 2 274695 Transcript 0 5.04 5.55 0.00 0.00 13.00 10.86 10.00 1.95 1.01 2.24 9.78 0.00 3.72 5.11 7.14 11.94 8.53 1.09 8.93 9.50 2.59 3.37 5.69 3 397216 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 378624 Transcript 0 5.04 8.85 7.70 3.45 9.21 3.46 1.99 7.00 0.85 11.70 7.90 10.05 13.39 11.12 16.32 15.85 8.56 4.56 1.88 5.75 1.20 5.79 2.13 5 378610 Transcript 0 65.13 62.02 37.36 30.93 83.54 38.04 32.73 51.74 24.64 80.54 43.85 29.01 36.42 51.75 75.12 76.42 62.46 38.27 49.84 49.14 23.48 22.04 32.56 6 476517 Transcript 0 7.87 1.87 3.36 1.30 3.53 8.27 1.32 14.07 5.47 14.43 0.61 2.24 0.00 3.39 3.36 0.02 3.99 14.30 13.47 15.86 0.00 1.31 0.02 7 ER1a ExonRegion 0 15.12 16.66 0.00 0.00 38.99 32.57 30.01 1.73 0.00 0.49 12.52 0.00 1.79 11.29 18.51 35.81 11.32 1.41 18.81 23.10 7.77 5.95 17.06 8 ER1b ExonRegion 0 37.44 46.63 1.84 4.22 89.40 64.56 90.92 7.84 6.33 16.78 43.22 20.80 26.69 44.59 42.08 111.29 62.75 8.99 33.40 66.62 22.67 16.63 43.84 9 E1a_E2a KnownJunction 0 9.71 24.86 6.80 15.72 93.12 42.08 47.12 27.72 18.49 48.81 41.48 37.06 26.95 24.78 4.45 16.32 39.18 14.59 36.24 35.92 8.90 5.39 3.41 10 I1 Intron 0 9.74 3.47 1.80 7.07 13.36 3.98 8.27 10.16 8.10 11.12 17.78 15.83 21.07 13.20 14.24 16.21 11.28 5.37 4.81 9.65 4.63 3.97 5.21 11 I1_AR1 ActiveIntronRegion 0 8.31 3.75 1.00 6.91 10.71 3.75 8.27 10.47 8.91 12.24 18.82 13.87 18.14 13.20 14.85 17.05 12.26 5.51 5.73 10.91 5.40 3.85 5.55 12 I1_SR1 SilentIntronRegion 0 15.79 2.36 5.15 7.86 24.58 4.99 8.37 8.98 4.88 6.59 13.72 24.22 33.55 13.42 11.91 12.96 7.37 4.88 1.08 4.54 1.50 4.51 3.86 13 E2_Aa NovelBoundary 0 5.78 9.21 1.83 4.40 21.48 18.06 10.91 2.05 12.30 7.63 7.95 12.60 35.87 21.37 19.66 39.90 13.74 0.00 9.60 12.14 2.72 3.12 15.71 14 ER2a ExonRegion 0 18.38 15.44 22.67 18.09 75.71 15.34 45.35 40.34 26.36 75.23 99.68 69.76 88.68 36.28 41.21 50.66 98.43 17.81 28.23 61.12 28.50 8.19 10.48 15 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 1.79 2.79 7.79 0.00 0.00 2.41 0.00 0.00 7.67 0.00 4.80 3.26 0.00 0.00 0.00 16 E2a_E3c KnownJunction 1 29.78 25.26 39.44 23.14 95.93 15.22 30.96 60.13 40.16 96.33 149.99 100.53 104.38 54.74 56.37 71.69 168.68 12.52 18.73 77.28 60.36 5.69 23.05 17 ER3a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.73 1.24 3.44 9.02 0.00 9.38 1.62 2.90 0.00 6.60 1.85 3.19 2.13 0.00 4.17 0.00 18 ER3b ExonRegion 0 4.66 3.25 6.62 6.27 16.59 1.83 8.74 12.10 7.66 24.31 35.57 15.59 28.14 13.32 16.83 13.08 36.31 6.28 7.64 22.55 10.14 2.08 4.11 19 ER3c ExonRegion 0 21.06 27.60 41.74 46.85 107.80 52.97 65.11 76.06 48.13 122.69 135.03 112.10 98.25 105.54 88.89 152.18 127.54 69.64 69.66 109.27 28.74 37.72 51.96 20 E3a_E4a KnownJunction 0 34.01 61.37 50.03 44.68 268.25 179.61 275.49 75.41 53.36 128.83 141.61 169.41 169.31 126.91 83.94 102.37 128.00 39.88 31.44 92.17 25.88 26.88 32.01 21 E3a_E5a KnownJunction 0 2.82 0.00 0.00 0.00 0.00 0.00 2.25 0.00 0.00 1.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22 ER4a ExonRegion 0 34.54 73.35 42.31 41.85 96.75 66.00 119.04 63.77 41.79 128.90 101.98 150.27 119.66 74.67 88.04 68.52 119.65 29.01 38.08 75.43 34.58 39.83 27.34 23 E4a_E5a KnownJunction 0 36.38 94.00 32.61 44.05 92.28 35.04 85.45 59.23 48.21 141.48 99.60 144.20 92.69 61.22 116.08 70.32 87.24 46.97 26.35 81.05 44.36 34.96 15.19 24 I4_AR6 ActiveIntronRegion 0 6.20 13.49 2.02 10.07 35.38 5.98 19.22 13.87 4.69 12.56 4.64 0.00 12.58 8.24 7.41 18.43 13.20 10.85 1.91 17.65 3.91 1.25 8.71 25 I4_AR7 ActiveIntronRegion 1 16.83 15.89 6.47 17.89 20.50 4.89 14.44 7.95 5.52 14.23 8.89 16.63 22.27 6.40 18.87 9.99 10.26 2.33 1.62 6.58 0.44 3.86 3.10 26 I4_AR8 ActiveIntronRegion 0 14.26 9.88 6.76 12.89 14.03 2.72 10.52 9.86 3.73 11.69 0.24 4.58 7.12 1.95 9.65 8.97 2.45 3.62 5.40 5.97 0.27 0.00 3.97 27 I4_AR9 ActiveIntronRegion 0 8.12 6.04 6.61 10.26 17.32 3.92 11.57 7.13 2.86 11.23 1.59 3.66 16.24 1.85 3.00 8.25 3.80 1.43 1.35 2.99 0.36 1.03 3.14 28 I4_AR10 ActiveIntronRegion 1 16.36 19.66 5.43 8.05 20.64 1.81 10.05 6.68 2.33 9.93 0.23 5.77 17.25 0.12 3.46 3.23 4.52 1.73 1.69 5.01 0.20 0.00 1.85 29 ER5a ExonRegion 0 37.87 64.09 29.78 33.46 70.99 26.88 43.52 48.48 35.89 106.85 71.54 104.47 72.34 92.15 69.15 104.23 116.35 54.85 45.27 63.58 34.35 30.10 26.74 30 E5a_E6a KnownJunction 1 37.27 39.60 43.46 24.94 124.87 77.97 43.99 42.63 34.17 102.21 78.76 105.93 86.52 112.07 52.91 60.24 142.68 53.23 51.30 76.06 27.74 27.74 49.60 31 ER6a ExonRegion 0 24.59 50.06 30.09 23.31 53.96 35.11 47.34 36.30 43.19 93.47 59.88 108.95 96.60 91.05 62.75 97.44 104.00 70.35 41.51 67.87 35.08 37.55 33.76 32 E6a_E7a KnownJunction 1 29.56 56.04 23.80 27.07 41.85 52.19 54.45 40.66 36.02 87.01 33.32 118.99 88.31 108.36 62.06 163.12 104.16 100.23 53.37 84.75 30.58 28.66 20.15 33 ER7a ExonRegion 0 20.34 61.21 37.01 31.29 59.47 53.37 48.85 48.36 43.46 95.68 61.81 90.39 86.14 108.95 49.56 128.77 108.66 86.35 42.51 69.17 39.40 25.47 33.86 34 E7a_E8a KnownJunction 0 20.15 62.82 44.94 35.39 56.20 52.98 58.34 53.15 41.70 93.80 70.23 77.43 91.55 97.65 96.79 99.29 108.74 56.96 45.08 78.43 53.50 16.17 53.52 35 ER8a ExonRegion 0 20.76 64.39 39.61 44.25 93.36 56.57 57.34 62.35 45.60 105.88 70.51 72.85 101.24 95.53 69.87 117.76 106.99 79.79 40.57 87.76 30.85 33.46 44.63 36 E8a_E9a KnownJunction 0 30.45 82.29 29.54 49.74 118.85 48.61 48.71 46.04 44.24 122.76 77.39 68.72 102.43 68.63 58.35 125.01 133.71 98.04 54.31 84.43 28.11 39.07 31.50 37 ER9a ExonRegion 0 22.39 71.72 29.35 38.55 106.10 47.08 52.69 42.86 41.57 132.25 72.17 90.00 94.57 99.84 74.90 129.57 99.57 72.74 48.91 74.43 28.58 42.73 58.03 38 E9a_E10a KnownJunction 0 36.30 78.08 18.80 43.05 117.32 37.42 66.33 48.02 42.71 146.56 76.81 89.43 108.76 100.59 69.47 105.78 126.88 67.40 57.88 98.37 28.48 47.58 60.01 39 I9_AR4 ActiveIntronRegion 0 3.49 2.65 1.64 5.44 1.77 2.12 9.52 2.56 0.83 2.29 1.73 5.95 20.78 0.42 0.68 3.61 8.25 0.69 1.58 7.88 0.36 0.00 1.45 40 I9_AR7 ActiveIntronRegion 1 3.14 6.50 2.14 0.00 0.00 4.45 7.10 7.02 2.60 1.41 0.00 17.19 2.98 0.17 5.23 3.87 2.90 2.46 7.38 5.54 0.00 0.00 0.00 41 ER10a ExonRegion 0 31.23 71.83 26.94 39.79 92.50 60.99 53.35 42.45 33.03 136.08 84.91 56.98 86.92 96.35 74.49 129.95 87.07 89.67 51.79 77.03 34.89 42.32 49.64 42 E10_Da NovelBoundary 0 3.48 0.00 8.28 7.56 7.64 0.00 10.51 2.22 8.45 13.91 2.32 0.00 0.00 4.41 10.01 7.26 12.25 16.37 0.00 8.31 6.30 8.76 11.44 43 E10a_E11a KnownJunction 1 30.38 140.44 38.94 48.68 167.15 29.24 47.12 44.03 33.28 129.15 81.39 61.07 87.82 115.43 40.67 113.90 67.13 90.87 53.08 63.79 23.85 62.76 70.77 44 I10_SR1 SilentIntronRegion 0 13.25 8.76 5.43 6.46 7.96 1.89 6.52 6.34 2.64 6.84 1.79 2.06 3.17 0.55 5.13 4.27 4.06 5.85 2.29 3.93 1.58 0.21 3.62 45 I10_AR2 ActiveIntronRegion 0 23.32 9.99 8.62 14.96 14.32 1.96 13.84 17.35 3.71 15.07 0.24 6.33 7.17 1.20 6.90 5.99 4.36 3.60 2.41 3.08 0.56 0.52 1.48 46 ER11a ExonRegion 0 34.72 112.42 25.60 35.23 110.13 39.44 59.32 46.62 33.28 113.17 69.33 73.19 80.08 86.93 65.06 105.49 85.73 57.12 33.18 52.89 35.68 39.13 37.65 47 E11a_E12a KnownJunction 0 41.64 157.60 34.33 42.62 113.16 34.18 69.38 68.63 37.76 126.33 63.75 85.38 93.18 93.41 113.48 92.03 69.57 49.83 27.20 38.29 24.90 28.84 32.35 48 I11_AR3 ActiveIntronRegion 0 10.66 13.34 3.35 12.40 11.44 2.78 14.52 3.15 3.37 5.72 0.00 2.18 10.62 0.45 3.13 6.35 3.53 0.28 0.97 4.55 1.01 0.00 1.35 49 ER12a ExonRegion 0 32.80 77.13 44.87 42.00 132.75 50.04 59.36 60.54 36.47 134.75 79.99 129.19 112.41 96.84 92.39 86.70 95.91 41.00 40.27 58.05 21.39 45.26 33.94 50 E12a_E13a KnownJunction 0 35.86 93.93 50.09 30.20 96.77 41.06 74.28 58.20 21.79 108.82 67.12 115.09 121.10 96.77 94.07 81.35 73.96 20.02 27.48 52.80 16.56 35.39 31.07 51 E12a_E14a KnownJunction 0 7.26 17.69 15.40 6.89 18.42 6.93 1.72 14.01 1.71 22.00 15.79 20.11 26.78 22.25 32.63 31.70 17.11 9.12 3.76 11.51 2.41 11.57 4.27 52 ER13a ExonRegion 0 34.03 78.05 37.05 28.84 101.13 62.12 45.46 59.73 23.78 98.49 80.11 115.11 112.49 91.11 83.63 73.12 78.75 43.11 56.02 64.74 16.06 53.54 30.67 53 E13a_E14a KnownJunction 0 24.45 101.76 28.36 40.75 148.05 52.13 35.64 61.45 26.82 108.25 80.76 85.23 134.08 104.24 94.94 51.10 62.18 48.13 83.39 75.29 19.40 45.74 19.80 54 I13_AR1 ActiveIntronRegion 1 44.66 20.84 5.05 19.08 23.87 3.42 15.82 5.35 3.97 6.54 0.47 8.23 26.09 1.00 7.71 3.97 5.50 3.01 5.02 5.35 0.54 0.34 3.54 55 I13_AR12 ActiveIntronRegion 0 10.50 2.73 1.12 2.72 6.17 2.31 8.05 2.24 1.80 3.75 0.00 3.99 3.44 0.00 0.36 2.10 1.71 1.44 0.55 2.48 1.11 0.00 1.92 56 ER14a ExonRegion 0 36.99 58.93 39.66 36.10 111.39 42.88 36.82 60.78 28.60 140.15 85.42 157.77 129.59 101.24 91.46 89.16 105.35 61.42 51.00 68.08 23.45 42.76 33.14 57 E14a_E16a KnownJunction 0 19.63 46.37 42.19 38.09 70.88 41.62 31.80 56.56 29.46 107.26 86.23 103.98 141.87 88.23 108.29 64.26 83.22 82.24 34.45 57.91 24.77 37.60 35.34 58 E15_Aa NovelBoundary 0 7.04 6.71 6.59 6.19 0.00 10.33 4.46 10.06 6.19 6.45 0.00 0.00 0.00 17.25 6.18 0.00 0.00 11.81 23.06 20.77 0.00 8.70 8.62 59 ER15a ExonRegion 0 15.73 3.74 2.34 0.99 7.07 14.44 2.63 13.98 3.77 13.22 1.22 4.49 0.00 6.78 1.65 0.04 7.99 10.95 8.02 25.45 0.00 2.62 0.04 60 E15_Da NovelBoundary 0 3.78 2.96 0.00 1.70 15.45 4.20 19.96 4.64 1.71 7.55 0.00 6.15 0.00 4.59 0.00 3.67 3.55 2.36 0.00 0.00 0.00 0.00 0.00 61 E15a_E16a KnownJunction 0 0.00 0.00 4.38 1.60 0.00 2.10 0.00 14.17 7.18 15.63 0.00 0.00 0.00 0.00 5.07 0.00 0.00 17.66 18.92 6.26 0.00 0.00 0.00 62 ER16a ExonRegion 0 29.68 64.64 49.93 46.07 109.28 79.98 58.55 71.18 32.41 136.35 94.36 113.38 105.80 104.37 91.61 91.76 107.09 86.56 59.56 84.13 28.19 44.20 29.51 63 E16a_E17a KnownJunction 0 22.00 44.27 43.02 43.52 190.07 277.68 54.72 92.25 45.37 115.00 94.08 146.75 107.14 147.74 86.66 120.82 107.06 130.66 67.30 110.32 28.36 41.39 30.13 64 ER17a ExonRegion 0 41.64 52.31 41.42 45.28 91.09 84.06 37.99 77.47 46.22 137.42 81.65 49.99 77.43 105.52 102.38 102.89 92.29 81.73 63.67 78.97 37.77 35.83 40.07 65 E17_Da KnownBoundary 0 128.62 120.37 41.31 53.67 115.70 173.93 94.11 83.63 66.38 167.14 71.33 107.28 115.74 126.38 157.24 98.18 135.02 60.07 24.19 104.19 42.44 47.33 32.18 66 ER17b ExonRegion 0 40.06 71.91 38.88 41.26 72.64 67.67 34.46 74.75 45.78 114.06 59.10 79.26 115.54 82.25 86.62 63.97 81.87 35.44 35.94 63.98 24.62 34.06 30.06 67 E17_Db KnownBoundary 1 55.79 79.26 34.56 22.11 91.60 62.18 35.73 59.15 23.00 77.60 35.80 86.58 55.03 46.21 38.32 38.54 91.26 30.97 19.67 55.42 40.09 17.57 25.10 68 ER17c ExonRegion 0 58.73 79.07 41.28 34.61 68.49 23.60 43.32 58.26 33.75 74.77 57.25 75.48 106.04 80.15 114.25 116.59 81.09 64.41 55.09 79.53 27.09 32.11 57.14 69 E17_Dc KnownBoundary 0 1931.08 1741.80 3792.98 4104.24 1539.13 1045.76 1777.90 4735.22 4208.93 4169.38 805.73 452.40 513.93 488.79 1031.71 1734.84 1626.55 5893.18 1251.33 1875.07 970.83 711.04 1836.76 70 ER17d ExonRegion 0 65.13 62.02 37.36 30.93 83.54 38.04 32.73 51.74 24.64 80.54 43.85 29.01 36.42 51.75 75.12 76.42 62.46 38.27 49.84 49.14 23.48 22.04 32.56