Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TBC1D7 Gene 0 45.72 52.24 53.58 48.45 41.05 64.60 28.75 58.37 44.02 69.00 112.00 42.95 27.46 86.39 69.07 76.77 82.71 70.45 69.99 62.06 22.03 22.50 22.40 2 379307 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 343141 Transcript 0 2.89 12.23 5.26 4.13 0.00 0.00 0.00 3.86 3.10 0.00 2.68 0.00 0.00 2.30 4.45 0.00 0.00 1.78 4.80 0.00 0.00 0.00 0.00 4 334971 Transcript 0 0.00 0.00 25.25 26.87 0.00 0.00 0.00 39.10 34.37 40.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28.15 0.00 0.00 0.00 0.00 0.00 5 421203 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 379291 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 2.47 4.45 7.26 4.02 0.00 0.00 0.00 0.00 0.00 0.00 7 446018 Transcript 0 0.00 0.00 1.24 0.00 0.00 11.36 2.08 0.00 0.00 0.00 2.37 0.00 0.00 0.00 0.00 7.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 422136 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 450347 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 452989 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 379300 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 356436 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13 416436 Transcript 0 0.00 28.74 3.02 3.56 3.48 19.87 6.40 0.00 2.55 4.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.85 0.00 6.07 0.00 0.00 3.67 14 428109 Transcript 0 0.00 0.00 0.00 0.00 0.00 2.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 420456 Transcript 0 0.38 2.21 0.33 0.00 0.00 6.96 1.20 0.47 0.67 0.32 1.40 0.55 1.40 0.01 0.37 0.54 0.60 0.33 0.58 0.77 0.00 0.38 0.00 16 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 1.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 ER1b ExonRegion 0 0.00 2.03 0.00 0.00 2.68 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 ER1c ExonRegion 1 29.43 47.69 11.52 0.94 23.87 55.77 38.39 4.29 4.71 13.92 33.89 0.00 0.44 22.22 29.71 53.38 42.43 20.10 8.79 13.02 4.41 9.47 9.87 19 E1_Da KnownBoundary 0 16.52 61.37 11.38 1.73 10.19 58.38 34.27 2.55 7.35 22.94 25.53 0.00 0.00 21.66 11.00 43.66 46.38 34.49 9.60 12.53 5.87 0.00 0.00 20 E1a_E4a KnownJunction 0 0.00 0.00 1.24 0.00 0.00 11.36 2.08 0.00 0.00 0.00 2.37 0.00 0.00 0.00 0.00 7.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 E1a_E4b KnownJunction 0 50.23 38.55 20.22 10.09 16.13 50.48 24.25 9.08 10.71 12.01 7.11 0.00 6.17 12.30 5.56 27.60 12.16 29.51 0.00 24.35 2.90 2.76 7.09 22 ER1d ExonRegion 1 2.22 12.80 8.21 3.40 2.73 10.07 4.09 7.06 9.36 19.67 30.86 1.73 3.35 20.12 10.13 14.61 37.56 19.45 6.85 10.79 8.97 5.57 3.00 23 E1_Db NovelBoundary 0 0.00 2.83 3.52 2.93 4.16 0.00 0.00 5.26 5.21 9.05 23.95 0.00 0.00 17.19 8.90 6.41 23.56 15.59 3.86 10.87 2.53 8.33 4.18 24 E1b_E4a NovelJunction 0 9.78 0.00 1.69 0.00 0.00 0.00 0.00 0.00 1.59 3.06 5.05 0.00 0.00 2.41 14.83 8.72 4.39 4.52 0.00 3.00 0.00 5.88 0.00 25 E1b_E4b KnownJunction 0 3.19 11.58 19.31 7.86 8.32 16.13 1.81 13.51 16.78 15.74 33.80 12.60 13.64 25.25 14.09 31.44 30.11 32.21 22.31 12.59 3.15 6.06 8.54 26 E1c_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 2.47 4.45 7.26 4.02 0.00 0.00 0.00 0.00 0.00 0.00 27 E1c_E4b KnownJunction 0 3.78 11.71 7.21 2.06 8.49 8.46 2.25 11.83 10.07 20.63 18.43 0.00 0.00 21.84 22.25 23.67 3.74 20.89 4.61 19.43 3.15 10.90 3.41 28 ER1e ExonRegion 0 2.12 4.98 5.02 2.59 7.76 5.13 1.32 10.11 7.97 16.06 22.61 0.00 0.70 23.71 22.77 26.15 15.51 20.97 4.78 12.02 3.31 11.98 3.96 29 E2_Aa NovelBoundary 0 0.00 30.26 0.00 4.59 3.40 21.81 5.74 6.61 5.64 4.46 10.11 13.50 6.82 4.94 5.19 4.36 0.00 6.26 17.13 11.44 5.56 0.00 0.00 30 ER2a ExonRegion 0 2.54 4.60 3.76 2.20 2.38 4.03 2.49 2.64 4.52 3.52 5.99 4.27 3.31 1.57 1.78 4.07 2.82 4.65 6.54 5.22 0.38 1.07 1.63 31 E2a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 2.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32 E2a_E4b KnownJunction 0 0.00 28.74 3.02 3.56 3.48 19.87 6.40 0.00 2.55 4.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.85 0.00 6.07 0.00 0.00 3.67 33 ER3a ExonRegion 0 0.77 4.41 0.66 0.00 0.00 13.93 2.39 0.93 1.33 0.64 2.80 1.11 2.79 0.01 0.74 1.08 1.19 0.67 1.15 1.54 0.00 0.75 0.00 34 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35 ER4a ExonRegion 0 2.04 3.93 0.70 1.79 0.55 11.41 4.34 3.28 5.52 2.81 6.93 0.15 10.03 13.61 11.05 10.56 4.21 2.39 4.06 1.03 0.15 5.21 1.27 36 E4_Ab KnownBoundary 0 6.59 13.16 0.00 4.06 0.00 8.69 6.54 4.31 8.83 3.98 13.53 0.00 6.82 14.54 0.00 12.22 8.79 2.57 9.22 3.07 0.00 5.88 4.01 37 ER4b ExonRegion 0 34.63 69.96 70.67 60.72 52.64 98.07 31.59 66.18 58.56 88.53 142.61 55.77 39.29 95.86 77.92 100.25 103.85 92.68 51.72 75.25 21.98 36.70 31.91 38 E4_Da NovelBoundary 0 0.00 0.00 0.00 17.55 0.00 0.00 7.42 0.00 1.13 2.53 5.05 0.00 13.31 0.00 5.19 7.78 0.00 2.40 4.61 3.13 0.00 0.00 0.00 39 E4a_E5a KnownJunction 0 23.26 43.87 49.64 59.63 52.12 127.14 37.10 77.42 61.69 94.85 145.83 80.13 64.44 80.99 89.62 98.86 129.50 82.28 52.24 107.32 36.20 32.03 45.93 40 E4a_E6a KnownJunction 0 5.85 11.05 63.24 30.03 10.61 54.40 15.15 35.16 19.10 40.00 49.75 11.55 0.00 45.44 18.17 43.49 32.45 45.23 35.01 34.83 10.87 23.57 15.79 41 ER5a ExonRegion 0 27.88 42.38 54.05 51.54 43.77 84.63 33.64 69.74 58.14 95.70 162.24 66.76 63.40 115.37 91.37 101.24 119.16 81.42 78.85 99.32 32.73 31.46 24.15 42 E5a_E6a KnownJunction 1 53.05 56.77 54.61 33.46 60.53 73.59 32.42 61.82 44.59 87.27 177.15 43.81 52.43 127.38 86.53 52.72 155.03 63.13 116.71 58.55 42.81 35.82 10.76 43 E6_Aa NovelBoundary 0 12.59 6.31 4.73 16.05 24.11 7.89 2.16 3.74 4.89 8.95 0.00 0.00 0.00 0.00 5.19 0.00 0.00 13.47 4.80 20.65 6.30 2.51 8.11 44 E6a_E6b KnownJunction 0 0.00 0.00 25.25 26.87 0.00 0.00 0.00 39.10 34.37 40.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28.15 0.00 0.00 0.00 0.00 0.00 45 E6_Ab NovelBoundary 0 46.08 93.34 93.11 85.87 148.81 148.89 91.33 108.64 81.97 126.12 203.47 100.53 40.26 141.21 110.39 95.79 106.50 118.93 131.77 121.95 58.01 27.68 30.65 46 ER6a ExonRegion 0 33.29 69.60 104.88 80.10 86.72 124.45 53.86 109.21 79.27 134.29 225.36 81.87 44.77 157.32 110.64 110.51 148.09 122.46 118.29 101.16 55.29 43.66 29.50 47 ER6b ExonRegion 0 35.56 71.99 95.33 81.23 109.17 125.07 62.23 101.29 81.76 128.22 230.40 95.25 49.71 139.02 114.89 106.40 132.70 120.84 121.04 118.30 53.33 35.00 40.53 48 ER6c ExonRegion 0 74.72 110.58 98.45 108.79 76.53 123.60 58.62 121.79 102.91 144.89 267.45 111.36 81.62 194.98 149.95 144.21 201.97 166.58 157.15 151.90 47.00 45.50 52.97 49 E6_Db NovelBoundary 0 0.00 6.12 3.25 9.72 0.00 0.00 1.99 17.79 5.27 7.04 7.37 6.30 0.00 6.71 0.00 0.00 13.56 10.69 4.33 9.14 3.03 0.00 8.02 50 E6b_E7a KnownJunction 0 81.57 145.57 77.23 94.63 79.29 133.79 61.56 102.11 89.44 127.30 215.32 173.46 60.06 199.66 187.28 126.04 178.21 118.47 123.11 169.06 52.26 41.58 39.69 51 E6b_E8a KnownJunction 0 2.89 12.23 5.26 4.13 0.00 0.00 0.00 3.86 3.10 0.00 2.68 0.00 0.00 2.30 4.45 0.00 0.00 1.78 4.80 0.00 0.00 0.00 0.00 52 ER7a ExonRegion 0 60.99 134.40 72.63 87.60 66.89 113.70 51.03 94.12 78.37 120.42 220.00 118.08 75.04 181.90 164.84 111.32 169.85 124.14 108.59 140.81 46.88 34.28 41.11 53 ER7b ExonRegion 0 73.15 129.26 71.38 88.67 90.64 110.60 53.29 100.25 82.68 120.86 234.12 84.70 50.12 159.37 147.78 92.69 158.65 135.58 99.14 128.72 42.42 33.99 40.01 54 ER7c ExonRegion 0 135.08 111.18 87.04 95.02 108.21 150.79 59.32 115.10 90.81 130.05 212.52 75.09 40.98 187.12 135.22 130.14 153.74 148.67 129.66 120.58 39.59 39.28 49.68 55 E7_Dc KnownBoundary 0 207.15 101.30 107.77 103.48 135.99 191.42 68.85 105.27 102.72 142.66 197.68 49.97 79.05 201.54 124.98 144.49 189.06 131.99 174.50 119.72 48.62 40.35 34.15 56 ER7d ExonRegion 0 112.51 104.65 96.66 81.45 104.57 162.88 49.07 90.36 81.05 113.41 196.19 83.91 68.85 189.11 134.44 147.95 162.47 123.39 146.21 98.89 58.57 34.59 44.46 57 E7_Dd NovelBoundary 0 2.96 0.00 3.28 5.13 3.40 0.00 8.13 2.18 4.11 1.42 7.32 0.00 19.48 2.47 0.00 7.78 9.54 2.03 0.00 2.81 0.00 0.00 3.33 58 E7d_E8a KnownJunction 0 142.40 118.01 110.94 81.47 69.95 151.84 42.13 110.24 72.34 93.21 161.67 59.27 52.92 164.81 144.51 119.97 99.49 114.91 127.16 93.89 55.78 46.11 18.61 59 ER8a ExonRegion 0 105.12 88.25 93.92 91.10 63.69 80.99 45.40 123.03 65.88 112.09 196.60 99.28 36.88 178.24 120.72 125.60 124.19 113.45 113.25 95.77 47.02 36.00 33.31 60 E8_Da NovelBoundary 1 7.04 0.00 2.90 3.76 0.00 0.00 6.09 1.89 4.02 6.80 7.63 7.65 26.13 0.00 4.70 11.11 8.42 4.73 0.00 8.18 0.00 0.00 4.10 61 E8a_E9a KnownJunction 0 75.57 93.54 142.72 119.43 92.87 140.09 77.37 113.98 66.87 167.54 178.68 197.76 82.46 139.91 89.00 118.60 165.68 78.89 101.37 72.42 36.57 27.43 33.46 62 ER9a ExonRegion 0 62.87 104.48 125.62 100.04 88.73 149.68 71.53 124.54 60.59 155.05 196.42 92.79 40.18 139.98 130.56 140.81 153.36 66.92 117.86 92.87 33.89 34.52 35.08 63 E9_Da KnownBoundary 1 84.61 151.88 117.32 113.01 156.71 181.20 85.28 141.01 60.18 138.80 215.32 42.61 13.64 144.62 209.04 156.45 136.89 69.02 131.96 127.77 39.29 43.05 35.51 64 ER9b ExonRegion 0 59.31 114.85 110.66 98.31 123.03 144.19 79.61 133.35 65.11 126.81 177.41 44.80 23.25 141.72 138.06 95.17 123.78 94.11 85.59 111.24 30.23 34.29 33.32 65 E9_Db KnownBoundary 0 56.75 105.24 102.51 85.50 133.96 123.22 72.96 118.09 62.21 108.79 162.73 87.93 26.62 167.64 141.79 81.77 86.77 123.41 53.27 94.09 25.88 27.56 33.21 66 ER9c ExonRegion 0 67.19 83.33 111.14 95.43 89.72 147.45 45.75 127.21 74.97 128.18 199.75 49.56 28.34 165.73 117.90 212.41 107.10 183.91 171.60 99.32 31.37 41.58 39.24 67 E9c_E10a KnownJunction 1 85.87 58.81 129.30 104.72 76.23 144.69 47.92 118.09 85.99 134.93 156.88 43.66 32.79 161.87 182.58 337.86 109.86 206.27 303.35 101.56 32.62 72.50 65.90 68 ER10a ExonRegion 0 83.18 53.67 85.87 67.43 38.96 54.25 27.76 71.18 61.22 92.77 120.74 38.23 23.57 88.60 87.96 111.91 97.21 89.56 123.58 80.50 24.41 30.83 30.63 69 ER10b ExonRegion 0 4.94 4.07 2.45 0.91 1.78 6.72 4.85 2.88 5.76 1.53 9.02 15.87 0.00 7.04 3.87 8.92 0.00 0.00 0.00 1.42 0.73 2.08 0.98 70 IG46 Intergenic 0 4.99 4.07 3.80 8.08 10.38 5.13 9.80 11.07 9.55 16.45 6.80 4.64 6.91 12.17 4.66 12.73 10.46 17.83 16.31 22.34 4.93 2.14 7.89 71 IG46_SR5 SilentIntergenicRegion 0 3.01 3.37 1.73 4.71 7.88 3.64 10.29 6.95 8.81 9.47 6.47 9.05 8.01 12.27 2.68 9.03 9.86 11.72 12.25 20.19 4.33 1.42 6.38 72 IG46_AR6 ActiveIntergenicRegion 0 4.10 2.85 1.15 4.04 9.92 4.19 9.55 6.21 7.36 13.66 7.82 5.66 3.19 12.47 6.45 14.04 9.71 21.78 14.26 29.90 6.90 2.54 9.81 73 IG46_SR4 SilentIntergenicRegion 0 3.00 3.50 3.00 5.73 8.20 4.62 7.88 8.28 7.76 15.53 6.88 3.44 5.44 11.20 3.18 12.10 9.40 19.24 18.62 21.58 4.89 2.17 7.11 74 IG46_AR5 ActiveIntergenicRegion 0 16.96 10.70 4.18 16.36 14.44 5.55 17.51 16.78 7.86 14.39 10.05 5.55 12.65 10.88 6.81 12.70 10.93 11.79 15.40 26.21 3.26 3.42 12.53 75 IG46_SR3 SilentIntergenicRegion 0 4.73 1.70 5.52 4.89 9.07 5.58 12.18 10.71 8.68 14.02 5.80 1.55 8.20 14.36 5.47 10.61 8.89 9.69 13.08 20.84 3.04 1.77 6.27 76 IG46_AR4 ActiveIntergenicRegion 0 9.47 4.76 8.84 19.61 12.55 7.86 11.76 23.83 17.68 28.59 8.44 3.39 13.13 15.93 12.46 21.92 17.10 37.70 23.90 30.33 8.07 3.33 11.55 77 IG46_SR2 SilentIntergenicRegion 0 6.76 5.10 6.90 12.60 16.58 6.72 10.67 16.02 12.00 25.77 6.21 3.06 5.19 12.36 5.20 15.60 11.20 17.39 14.12 21.36 5.56 1.72 8.87 78 IG46_AR3 ActiveIntergenicRegion 0 10.51 5.97 3.27 13.56 16.46 4.46 12.18 38.26 17.13 23.74 5.67 0.00 5.78 6.85 6.19 11.29 7.21 21.37 23.68 17.48 3.75 2.71 6.56 79 IG46_AR2 ActiveIntergenicRegion 0 9.68 8.39 6.56 18.54 11.44 1.70 6.12 31.54 20.66 28.87 2.22 3.25 3.52 17.78 4.93 11.89 22.12 19.40 10.19 22.07 3.69 6.56 9.25 80 IG46_SR1 SilentIntergenicRegion 0 7.39 5.27 2.55 10.87 13.89 3.17 5.46 11.15 13.08 13.75 3.87 0.71 1.35 9.43 9.78 15.47 9.09 11.54 11.65 17.95 1.69 4.68 6.15 81 IG46_AR1 ActiveIntergenicRegion 0 8.02 4.01 0.00 2.71 33.59 16.99 10.54 6.73 3.59 8.62 1.09 2.39 7.78 18.42 9.54 15.92 10.95 3.57 20.58 19.09 1.48 2.80 11.71