Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 MRS2 Gene 0 63.32 81.65 48.27 61.88 104.79 95.73 66.16 73.21 58.82 61.75 93.28 105.76 82.94 123.39 107.00 86.49 96.20 27.56 36.07 51.27 28.36 29.42 25.14 2 443868 Transcript 0 0.00 0.47 0.41 0.05 1.26 0.00 0.01 0.00 0.08 0.00 0.90 0.83 0.00 0.93 2.38 0.69 2.04 0.43 0.00 1.51 0.00 0.00 0.00 3 274747 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 465103 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 483634 Transcript 0 46.42 45.43 17.28 20.66 38.44 42.01 52.30 23.79 25.16 22.05 25.85 23.53 32.95 39.83 38.22 61.28 50.94 38.07 45.21 51.75 25.68 20.36 43.64 6 378353 Transcript 0 33.97 62.58 31.89 41.50 46.98 55.00 35.19 37.70 31.45 37.38 17.38 20.07 12.75 59.45 82.39 41.29 35.36 19.79 12.20 35.08 11.11 21.22 9.27 7 378386 Transcript 0 0.00 6.10 0.00 1.36 5.35 7.34 0.00 0.00 1.24 0.00 1.93 8.66 0.00 1.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 446191 Transcript 0 37.56 17.96 6.89 22.01 29.63 52.92 32.72 27.19 14.64 25.14 61.12 28.51 24.67 124.61 51.05 69.73 54.42 11.32 21.93 32.21 11.92 14.27 9.99 9 ER1a ExonRegion 0 5.71 3.93 1.96 0.91 10.61 43.34 26.57 4.38 1.19 3.59 27.06 0.00 0.94 13.10 13.64 26.95 21.02 10.41 4.46 12.55 9.70 2.15 2.06 10 ER1b ExonRegion 1 9.28 13.34 18.21 8.60 29.29 67.04 31.19 21.84 13.93 29.00 102.08 8.30 16.77 94.27 72.30 74.68 86.77 36.01 15.49 36.44 57.17 11.08 13.61 11 E1_Ac KnownBoundary 1 9.85 18.02 28.47 22.94 4.33 4.83 6.05 29.90 25.43 45.61 72.07 0.00 21.91 178.06 119.04 190.21 94.06 50.74 11.39 62.38 43.31 20.39 23.99 12 ER1c ExonRegion 1 5.63 11.65 15.54 14.77 8.57 21.92 5.72 18.82 24.93 44.60 56.01 2.85 13.00 159.94 80.97 115.85 77.12 24.57 7.60 25.44 33.96 12.64 20.89 13 E1a_E2a KnownJunction 0 6.82 12.50 19.19 25.84 25.38 44.58 9.89 26.21 32.15 51.95 46.80 22.36 13.64 89.06 44.63 70.07 99.02 48.96 9.04 6.07 36.63 7.65 24.33 14 ER2a ExonRegion 0 13.27 25.14 22.27 27.70 94.52 176.71 88.22 28.54 33.78 58.10 92.86 36.98 41.13 160.63 103.19 99.69 129.36 18.83 18.29 37.38 59.02 25.20 21.03 15 E2a_E3a KnownJunction 0 16.00 35.45 29.98 31.63 173.68 447.53 217.59 50.89 34.72 57.97 102.50 50.42 81.00 234.27 186.79 90.66 156.33 19.44 13.55 55.74 52.57 42.86 21.17 16 E3a_E7b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 ER3a ExonRegion 0 11.21 43.30 40.80 34.71 108.76 299.56 141.90 49.52 43.45 79.81 108.47 73.86 92.15 219.45 176.12 77.28 146.02 21.09 13.30 51.69 54.31 37.01 19.87 18 E3b_E4a KnownJunction 0 48.90 78.21 56.18 42.82 74.19 98.35 78.26 57.18 51.65 92.67 132.24 152.30 91.71 251.75 119.66 87.16 152.88 26.99 13.27 70.31 37.25 38.15 22.19 19 E3b_E6a KnownJunction 0 0.00 0.00 0.00 0.00 4.07 2.50 5.34 0.00 0.00 0.00 0.00 0.00 6.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 ER3b ExonRegion 0 25.29 55.82 45.89 34.28 61.14 137.35 71.82 58.42 45.08 85.67 118.97 113.86 93.33 226.00 122.00 77.28 144.41 24.76 12.90 52.55 43.30 33.96 14.68 21 ER4a ExonRegion 0 35.79 69.63 49.09 40.14 84.25 112.92 65.68 58.92 56.03 89.32 164.94 168.19 118.39 282.20 133.81 122.49 161.04 27.10 17.09 72.53 37.00 40.79 18.33 22 E4_Da KnownBoundary 0 86.83 96.63 61.65 71.22 130.90 136.91 99.72 80.42 73.93 92.00 165.15 203.02 151.94 299.55 165.89 151.24 156.90 41.12 29.37 90.76 30.02 40.97 50.11 23 E4a_E8b KnownJunction 0 37.56 17.96 6.89 22.01 29.63 52.92 32.72 27.19 14.64 25.14 61.12 28.51 24.67 124.61 51.05 69.73 54.42 11.32 21.93 32.21 11.92 14.27 9.99 24 ER4b ExonRegion 0 38.41 47.33 43.33 57.33 98.33 59.85 63.62 61.06 63.79 81.33 162.22 161.38 95.62 247.98 126.93 151.36 189.31 27.58 38.70 62.23 30.47 46.62 47.21 25 E4b_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.77 0.00 0.00 0.00 0.00 0.00 0.00 26 E4b_E6a KnownJunction 0 57.57 75.25 90.42 73.05 95.25 76.38 84.88 88.14 74.68 96.65 175.36 292.75 168.50 212.96 154.15 180.04 215.33 31.46 33.60 44.55 51.28 35.76 37.47 27 E5_Aa NovelBoundary 0 13.85 9.01 18.01 9.22 7.98 5.22 8.52 10.60 1.77 4.03 0.00 0.00 0.00 15.42 5.19 11.45 13.93 4.19 0.00 8.88 3.03 0.00 0.00 28 ER5a ExonRegion 0 0.00 1.42 1.24 0.15 3.78 0.00 0.02 0.00 0.25 0.00 2.70 2.49 0.00 2.80 7.15 2.08 1.36 1.29 0.00 4.52 0.00 0.00 0.00 29 E5a_E6b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 ER6a ExonRegion 0 42.10 45.93 65.08 58.63 79.37 66.89 63.35 70.10 69.22 94.01 189.25 240.85 149.22 249.99 169.34 155.88 238.43 17.97 42.59 63.70 28.34 57.95 27.38 31 E6_Ab KnownBoundary 0 58.38 54.27 76.11 77.28 98.13 60.36 76.31 68.76 99.10 102.48 161.62 251.48 183.10 208.84 163.79 155.94 233.57 33.62 44.90 76.44 43.43 46.78 8.71 32 ER6b ExonRegion 0 53.55 49.68 52.50 47.18 77.92 83.56 56.81 55.03 63.15 86.98 170.02 229.22 132.70 268.93 142.72 158.34 225.55 27.83 48.10 60.37 61.52 48.48 30.28 33 E6_Da NovelBoundary 0 0.00 10.92 5.74 20.61 12.14 0.00 22.17 18.20 7.29 18.13 11.58 11.85 5.84 7.18 20.03 24.27 51.15 4.44 3.76 18.28 5.62 3.12 7.43 34 E6a_E7a KnownJunction 0 69.20 46.37 48.93 53.47 84.38 99.49 97.86 51.22 49.59 74.43 185.94 229.72 145.93 257.29 177.14 191.57 278.07 28.69 67.86 72.80 88.84 47.33 43.96 35 I6_AR1 ActiveIntronRegion 0 7.20 13.93 4.62 12.19 10.08 5.41 18.33 8.00 7.12 8.02 11.75 11.47 13.56 11.54 6.54 12.52 13.25 6.92 8.66 11.22 3.67 3.74 3.20 36 I6_AR2 ActiveIntronRegion 0 4.69 11.37 3.79 17.50 14.05 7.07 10.85 10.28 9.02 7.95 16.19 27.45 30.15 17.14 7.82 33.01 13.62 9.67 12.29 15.46 5.23 10.42 6.24 37 I6_SR1 SilentIntronRegion 0 3.91 7.04 4.02 9.83 10.60 8.04 11.95 6.75 8.49 7.39 9.07 14.12 16.97 14.32 6.36 16.68 14.53 10.26 10.86 16.90 5.74 2.36 6.42 38 E7_Aa NovelBoundary 0 12.15 11.38 8.54 13.88 20.88 17.89 11.17 8.91 11.11 7.39 14.27 18.61 0.00 18.89 0.00 20.85 13.46 1.82 9.41 21.03 8.34 5.27 12.29 39 E7_Ab NovelBoundary 0 47.05 33.94 32.23 47.58 67.91 67.86 82.36 43.09 54.54 67.80 148.41 221.17 93.66 160.16 85.91 158.68 180.55 42.16 53.93 63.85 69.62 39.86 35.51 40 ER7a ExonRegion 0 41.01 37.88 42.51 41.65 79.94 88.48 71.33 46.78 52.57 73.40 183.99 283.31 136.60 268.28 165.73 189.29 261.80 41.81 55.15 62.50 80.30 57.17 40.93 41 ER7b ExonRegion 0 50.94 81.11 61.44 45.05 170.74 123.89 109.58 58.53 70.25 82.09 194.40 278.63 150.69 307.35 164.11 220.79 216.57 60.53 64.65 71.23 73.20 47.76 44.87 42 E7a_E8a KnownJunction 1 64.23 105.38 69.51 74.48 219.61 98.75 100.96 69.95 64.96 103.96 218.27 243.98 103.40 314.09 126.21 232.50 261.06 54.64 40.57 70.50 77.65 42.37 65.99 43 E8_Ab NovelBoundary 0 61.57 35.85 31.96 53.67 89.90 90.57 58.74 50.27 48.35 68.55 117.08 83.58 59.74 240.27 109.90 127.66 103.04 38.59 36.61 56.69 21.50 23.15 28.26 44 ER8a ExonRegion 0 54.32 66.97 49.50 64.78 155.01 116.51 81.38 59.11 66.70 90.38 211.97 200.60 103.81 348.86 186.45 215.78 235.46 57.53 41.41 70.35 59.06 40.56 47.57 45 ER8b ExonRegion 0 64.28 48.25 61.36 72.03 141.16 158.55 79.75 89.41 81.57 94.05 216.98 184.55 127.41 359.06 217.42 313.85 226.21 97.30 88.25 97.18 61.44 66.69 62.85 46 E8a_E9a KnownJunction 0 85.05 62.36 94.38 88.53 124.79 124.87 56.66 102.23 81.39 88.83 233.80 156.20 102.10 287.36 171.46 256.26 302.85 107.32 85.93 82.96 71.91 57.93 51.99 47 ER9a ExonRegion 0 71.28 63.82 64.30 60.16 90.02 89.46 71.48 82.37 71.02 85.32 207.46 186.32 100.61 282.23 161.05 167.43 263.76 55.41 52.82 88.09 77.76 46.46 32.37 48 E9_Da KnownBoundary 0 86.83 83.34 83.35 60.27 93.97 123.39 135.71 121.46 97.89 113.25 216.05 315.70 133.60 375.60 186.54 145.77 170.83 64.00 74.36 107.32 96.43 59.03 43.28 49 E9a_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 50 ER9b ExonRegion 0 95.49 96.96 72.08 63.48 169.35 165.41 117.16 110.72 94.94 113.89 238.03 184.54 100.60 403.42 269.44 236.69 284.36 54.12 77.00 95.37 96.29 61.24 56.65 51 E9b_E10a KnownJunction 0 106.76 99.32 75.46 93.39 244.23 164.17 128.47 85.48 84.29 115.08 225.90 135.94 127.91 330.86 234.63 282.49 326.13 82.74 95.06 105.27 90.75 56.89 82.72 52 ER10a ExonRegion 0 75.00 78.79 64.07 57.19 134.93 176.17 85.31 79.05 62.86 91.78 190.50 140.43 113.91 361.76 243.04 242.60 258.91 53.55 57.27 77.44 75.41 44.50 61.64 53 E10_Da KnownBoundary 0 49.49 34.60 47.22 36.49 46.86 92.16 45.36 55.82 35.36 57.99 82.92 59.87 49.67 68.93 30.66 96.13 81.53 28.48 17.13 35.15 22.55 10.35 34.57 54 E10_Db KnownBoundary 0 0.00 0.00 0.00 0.00 4.24 0.00 0.00 2.51 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 2.57 4.71 0.00 0.00 0.00 0.00 55 E10_Dc KnownBoundary 0 7.41 0.00 13.63 17.01 28.10 35.95 39.97 12.24 14.12 10.91 19.11 26.11 6.33 40.61 4.45 15.72 36.19 9.58 17.79 22.69 3.15 6.25 0.00 56 E10c_E11a KnownJunction 0 66.16 37.82 43.08 41.05 110.27 118.11 73.40 68.96 38.11 94.88 156.09 155.15 110.87 298.84 162.68 150.99 209.07 20.44 48.57 47.81 49.73 35.33 19.72 57 E10c_E12a NovelJunction 0 2.82 3.16 13.04 2.06 0.00 10.68 6.76 4.52 5.30 2.90 10.42 0.00 0.00 0.00 10.75 0.00 4.77 2.57 0.00 6.33 0.00 0.00 0.00 58 ER10b ExonRegion 0 62.44 54.91 55.75 48.38 125.76 169.63 80.76 80.37 58.05 95.19 190.39 214.31 126.63 316.70 239.35 170.90 219.51 46.19 63.71 63.83 55.09 35.42 44.05 59 ER10c ExonRegion 0 67.31 49.62 52.69 46.52 132.72 158.56 93.47 74.67 58.63 97.95 202.57 200.60 118.50 345.40 212.37 173.57 235.46 44.47 67.10 67.52 54.80 33.61 42.48 60 ER10d ExonRegion 0 46.42 45.43 17.28 20.66 38.44 42.01 52.30 23.79 25.16 22.05 25.85 23.53 32.95 39.83 38.22 61.28 50.94 38.07 45.21 51.75 25.68 20.36 43.64 61 E10_Dd NovelBoundary 1 148.77 98.47 20.64 37.39 136.67 134.47 231.85 63.50 63.74 41.42 45.06 118.54 185.38 79.70 85.30 89.38 54.51 54.68 50.73 136.72 41.14 31.90 67.61 62 I10 Intron 0 19.81 31.94 12.87 19.26 32.10 34.25 27.89 19.86 19.95 15.15 18.41 32.06 35.96 27.97 15.32 29.53 27.08 11.56 13.92 20.61 6.08 10.82 5.81 63 I10_SR1 SilentIntronRegion 0 13.64 15.39 11.26 18.21 24.74 26.72 22.26 18.04 20.63 10.06 22.75 25.62 36.64 34.19 17.36 25.82 27.75 11.35 8.03 22.06 3.71 17.52 3.29 64 I10_AR1 ActiveIntronRegion 0 8.68 25.01 8.38 13.66 15.36 32.48 26.48 18.59 27.16 14.57 24.09 36.92 49.18 33.32 12.57 42.89 44.93 19.59 14.63 30.35 6.86 12.30 8.19 65 I10_SR2 SilentIntronRegion 0 7.49 14.38 4.41 8.32 17.93 22.19 14.78 9.58 9.59 7.00 12.23 27.49 21.19 14.67 5.84 17.70 12.29 3.60 12.45 11.88 1.23 6.59 3.28 66 I10_AR2 ActiveIntronRegion 0 36.82 53.29 21.45 29.81 54.41 45.47 38.73 27.46 21.01 22.30 16.60 34.06 35.63 29.85 21.94 29.09 23.69 11.00 16.63 18.74 9.34 9.74 6.69 67 E11_Aa NovelBoundary 1 67.72 54.20 38.05 58.13 89.05 68.94 48.40 44.07 45.54 27.16 29.64 81.78 61.36 53.51 23.49 45.63 58.16 16.25 17.41 16.62 12.79 5.63 3.93 68 ER11a ExonRegion 0 85.18 96.43 55.97 66.10 159.68 134.56 108.41 79.08 63.59 97.69 187.95 143.25 85.74 319.20 268.11 244.81 218.90 50.57 70.86 56.08 73.92 51.58 55.28 69 E11_Da KnownBoundary 0 35.41 83.54 46.89 39.56 54.75 58.94 70.17 48.14 33.82 56.09 22.43 11.70 26.95 111.72 120.90 72.55 78.54 41.70 17.32 39.56 21.93 11.82 15.62 70 E11a_E12a KnownJunction 0 56.23 60.52 54.76 61.36 95.59 108.29 89.25 77.79 44.68 74.30 205.00 86.43 73.53 249.34 211.51 146.54 111.83 29.31 21.27 44.55 59.86 35.27 71.45 71 ER11b ExonRegion 0 33.97 62.58 31.89 41.50 46.98 55.00 35.19 37.70 31.45 37.38 17.38 20.07 12.75 59.45 82.39 41.29 35.36 19.79 12.20 35.08 11.11 21.22 9.27 72 E11_Db NovelBoundary 1 55.64 123.14 17.50 45.42 28.10 68.71 30.65 54.59 33.48 22.89 8.05 57.02 27.27 12.13 10.75 11.71 0.00 2.11 9.60 30.23 0.00 8.45 3.24 73 I11 Intron 0 20.18 32.96 3.48 14.52 40.81 23.60 22.09 12.28 14.04 9.78 5.53 14.08 13.28 16.80 6.26 11.33 4.72 2.64 7.59 17.24 1.05 7.94 0.00 74 I11_AR1 ActiveIntronRegion 0 20.56 33.56 3.55 14.80 41.56 24.05 22.51 12.51 14.30 9.94 5.63 14.35 13.53 17.11 6.38 11.55 4.78 2.69 7.74 17.57 1.07 8.10 0.00 75 E12_Aa NovelBoundary 0 41.64 72.09 40.12 63.06 107.89 39.30 75.34 63.75 46.56 35.51 22.74 19.36 45.29 22.84 14.09 11.88 25.81 8.91 14.21 40.59 9.45 6.00 4.35 76 ER12a ExonRegion 0 89.05 120.69 65.08 94.45 146.74 115.31 76.16 110.08 81.35 73.84 89.55 132.02 113.48 83.73 104.21 52.19 65.90 16.07 33.50 49.49 12.62 28.29 15.85 77 ER12b ExonRegion 0 0.00 6.10 0.00 1.36 5.35 7.34 0.00 0.00 1.24 0.00 1.93 8.66 0.00 1.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00