Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 E2F3 Gene 0 62.23 116.15 64.52 37.27 111.84 42.81 88.16 58.76 24.68 154.76 132.28 107.18 76.28 155.12 74.89 121.84 121.39 103.49 52.94 126.51 47.01 67.98 58.78 2 346618 Transcript 0 19.58 51.78 26.75 21.49 58.29 32.60 58.43 34.27 17.46 113.47 125.98 107.27 52.98 147.27 38.10 107.36 121.10 108.07 51.55 115.80 46.22 49.90 53.19 3 378646 Transcript 0 0.00 6.78 6.27 3.93 14.35 2.31 15.32 9.76 6.32 36.00 31.32 23.01 20.45 22.01 9.07 31.02 39.89 28.31 18.54 30.04 14.50 8.31 12.29 4 ER1a ExonRegion 1 0.00 5.29 3.38 0.00 24.62 16.36 17.85 7.81 1.36 16.03 49.71 2.34 0.00 25.40 4.12 11.35 16.90 11.57 4.71 26.21 1.41 1.79 4.35 5 E1_Ab KnownBoundary 1 0.00 8.22 12.06 1.33 33.96 24.42 33.61 24.36 2.98 46.42 92.76 6.30 0.00 52.74 14.46 19.14 37.31 41.62 12.89 33.36 5.68 2.45 7.85 6 ER1b ExonRegion 1 2.05 5.71 3.52 0.66 3.44 4.29 6.36 8.35 1.35 20.78 46.60 12.39 0.15 33.94 4.30 9.91 22.25 12.76 13.85 25.40 1.92 2.29 3.61 7 E1_Da KnownBoundary 0 0.00 2.50 1.39 0.00 0.00 0.00 0.00 0.00 0.00 6.04 17.79 6.00 0.00 4.24 5.07 0.00 7.85 1.62 4.33 0.00 2.66 0.00 0.00 8 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 ER1c ExonRegion 1 1.00 7.13 3.22 0.86 2.28 2.98 3.32 2.71 0.38 10.31 29.49 7.38 8.69 31.80 4.80 13.05 17.44 13.24 10.56 10.51 1.76 0.89 3.58 10 E1b_E2a KnownJunction 0 3.48 8.55 7.10 3.26 3.48 0.00 1.90 6.82 0.00 21.89 13.64 5.85 0.00 14.19 6.30 14.10 27.12 26.45 0.00 15.92 2.41 2.63 0.00 11 I1_AR2 ActiveIntronRegion 0 3.53 2.26 3.19 3.22 4.38 0.82 16.03 3.66 0.27 6.01 4.05 13.03 7.25 2.69 5.77 14.40 14.57 11.40 6.67 26.38 6.93 0.62 4.11 12 I1_AR3 ActiveIntronRegion 0 3.12 3.52 2.46 1.68 3.45 1.01 20.09 3.64 0.51 3.89 5.79 12.48 12.50 4.94 4.11 12.18 19.71 8.72 6.83 20.78 4.25 1.53 10.50 13 I1_SR1 SilentIntronRegion 0 4.80 6.89 6.69 5.52 9.19 1.74 20.13 8.19 1.53 11.17 4.94 12.60 12.14 3.02 8.03 12.37 14.55 7.20 4.42 19.42 4.64 0.86 5.96 14 I1_AR1 ActiveIntronRegion 1 4.78 3.89 2.77 4.85 6.07 1.63 21.47 5.19 1.34 8.68 0.50 12.31 20.79 2.69 6.95 10.01 9.32 3.06 3.66 23.01 3.96 0.48 6.60 15 I1_AR2 ActiveIntronRegion 0 6.14 1.97 2.89 8.00 1.90 3.67 13.71 5.63 1.24 9.21 1.00 6.98 17.25 1.00 2.71 12.56 7.24 6.68 2.88 22.37 0.36 0.00 8.05 16 I1_AR1 ActiveIntronRegion 0 12.65 17.86 7.76 5.47 9.90 1.64 18.35 7.44 1.47 9.40 0.52 7.48 4.24 2.14 8.54 11.58 9.75 9.35 3.81 18.35 2.52 0.83 4.10 17 I1_AR2 ActiveIntronRegion 0 5.61 5.95 7.97 3.45 7.48 0.52 19.19 7.26 0.52 10.09 1.92 10.11 6.10 2.88 9.10 7.55 9.71 4.95 2.26 12.79 2.17 0.30 4.58 18 ER2a ExonRegion 1 11.57 29.78 14.74 12.81 29.29 11.08 28.89 18.64 12.58 84.35 99.94 37.65 34.34 95.77 19.40 75.44 80.72 85.47 43.60 98.00 46.40 34.27 37.15 19 E2a_E3a KnownJunction 1 10.52 50.19 27.88 13.15 58.74 14.37 37.19 20.58 11.23 90.61 123.50 68.42 19.15 96.47 10.75 78.36 82.19 67.07 61.65 92.87 46.58 25.84 23.56 20 E2a_E3b KnownJunction 0 0.00 0.00 0.00 1.33 0.00 2.38 4.33 0.00 1.79 6.21 11.21 0.00 0.00 9.95 0.00 0.00 18.51 3.52 0.00 6.20 11.74 5.51 0.00 21 I2 Intron 0 7.15 13.57 4.55 3.26 11.86 2.79 15.76 11.96 5.44 17.68 31.99 36.45 45.20 31.98 11.59 27.11 36.93 17.00 5.38 25.34 7.25 9.15 8.43 22 I2_AR1 ActiveIntronRegion 0 2.71 9.85 3.41 1.77 13.75 1.71 15.07 5.11 3.65 13.21 29.11 33.68 26.31 20.73 10.86 14.64 27.18 5.46 3.30 25.88 5.64 9.54 12.16 23 I2_SR1 SilentIntronRegion 0 7.73 14.06 4.70 3.45 11.64 2.93 15.88 12.86 5.68 18.28 32.41 36.87 47.68 33.46 11.70 28.74 38.23 18.50 5.65 25.32 7.47 9.11 7.97 24 E3_Ab NovelBoundary 0 16.30 35.91 24.48 11.32 52.72 15.22 48.98 19.35 15.83 71.51 82.13 36.61 19.48 92.12 22.75 35.03 87.80 89.87 6.96 57.21 21.31 21.92 11.78 25 ER3a ExonRegion 1 11.70 45.06 26.18 15.14 43.94 15.83 39.86 20.74 13.33 92.66 123.91 70.18 26.41 112.32 16.34 53.97 94.51 95.11 34.87 81.63 43.96 26.87 21.95 26 ER3b ExonRegion 0 15.01 54.33 27.25 24.26 49.33 20.82 54.62 32.36 15.23 139.47 148.64 89.11 94.02 164.42 47.92 126.58 146.24 159.42 60.21 147.57 66.40 57.18 60.85 27 E3_Da KnownBoundary 0 3.70 41.37 28.33 26.04 75.55 18.17 77.33 52.66 35.82 177.05 182.78 125.59 85.71 225.68 62.30 219.09 201.50 150.72 82.73 195.59 61.34 52.84 77.77 28 E3a_E7b KnownJunction 0 0.00 20.33 18.80 10.45 43.04 4.54 41.65 29.29 17.16 101.81 82.76 69.02 61.36 56.10 27.20 93.05 101.17 81.41 55.63 83.92 31.75 19.41 36.88 29 ER3c ExonRegion 1 10.79 35.87 19.26 21.53 50.41 25.27 50.81 33.64 21.94 134.07 131.21 132.57 64.91 217.40 43.00 112.35 173.43 127.38 41.60 159.96 67.74 55.05 51.16 30 E3b_E4a KnownJunction 1 22.67 50.98 18.18 23.77 39.98 51.45 54.85 27.93 22.95 126.44 108.50 131.44 53.08 195.07 26.58 68.79 120.43 157.98 45.74 130.39 69.68 45.74 58.30 31 E3b_E6a NovelJunction 0 0.00 0.00 0.00 1.76 0.00 0.00 0.00 0.00 0.00 0.00 2.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.27 0.00 32 E4_Aa NovelBoundary 0 0.00 3.22 1.36 0.00 4.16 21.98 8.74 2.51 4.20 11.44 0.00 11.10 0.00 5.00 0.00 0.00 28.99 4.52 0.00 17.45 3.15 2.33 0.00 33 ER4a ExonRegion 0 20.35 55.55 21.56 26.55 54.00 33.88 64.07 42.69 20.26 141.75 154.46 138.11 91.50 180.67 47.97 107.91 182.69 142.42 64.11 162.17 66.08 71.27 59.86 34 E4a_E5a KnownJunction 0 11.04 37.69 39.47 37.82 94.91 42.65 112.44 51.75 19.91 143.20 150.62 193.71 79.05 156.57 62.80 106.13 149.32 128.84 104.10 165.93 36.94 74.15 64.62 35 ER5a ExonRegion 0 25.73 77.24 27.83 33.27 102.05 45.61 75.45 51.81 25.81 141.67 194.00 171.97 101.96 193.69 54.17 184.32 185.94 153.86 88.25 165.81 55.09 82.27 91.70 36 E5a_E6a KnownJunction 0 21.26 50.71 28.77 20.88 55.01 56.73 96.89 37.09 28.36 130.31 152.83 130.84 67.53 176.00 52.78 195.93 150.16 154.62 57.32 137.17 41.02 101.71 108.24 37 ER6a ExonRegion 0 27.34 60.93 37.37 30.88 59.61 37.22 62.87 40.61 25.34 165.63 205.26 150.67 85.56 175.51 49.90 199.50 182.86 148.31 74.34 158.68 67.96 71.54 90.22 38 E6a_E7a KnownJunction 1 20.52 76.17 24.60 27.47 67.40 53.78 75.87 47.60 18.26 152.28 162.41 149.30 35.06 259.05 42.90 157.05 147.83 132.03 78.40 135.57 62.95 46.84 67.69 39 ER7a ExonRegion 0 23.85 67.48 32.02 21.44 75.83 41.27 75.10 50.54 23.52 156.46 151.55 141.04 76.13 209.09 55.97 176.13 160.80 157.19 51.10 159.60 81.99 62.86 89.34 40 E7_Ab KnownBoundary 1 57.27 147.54 16.68 23.01 83.19 18.51 57.54 59.89 23.38 149.81 107.40 171.06 94.15 236.51 39.56 142.01 130.25 154.25 34.26 177.50 58.81 37.23 81.27 41 ER7b ExonRegion 0 33.32 138.86 33.28 26.24 74.92 26.74 67.25 58.84 23.32 153.90 129.66 164.40 58.88 193.93 61.55 116.64 137.61 114.19 53.55 154.57 60.42 57.10 51.79 42 E7_Da KnownBoundary 0 44.82 177.14 43.20 40.32 136.08 51.39 124.45 62.47 22.60 184.94 171.94 64.67 62.33 203.37 80.47 144.24 206.73 102.56 63.25 186.45 51.09 54.44 69.74 43 ER7c ExonRegion 0 83.37 147.81 84.49 46.28 142.02 51.66 107.97 71.70 29.22 178.72 138.63 115.20 85.74 165.85 93.15 131.40 124.91 105.04 56.49 134.56 47.77 79.10 63.35