Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C5orf45 Gene 0 74.13 41.27 31.29 54.76 42.23 39.82 31.40 44.45 67.60 41.24 25.53 27.52 23.96 31.90 46.09 43.44 31.69 67.25 38.96 42.25 71.29 223.82 151.54 2 403396 Transcript 0 24.90 11.36 11.02 19.93 18.13 14.93 11.20 16.97 26.22 20.32 17.64 12.56 9.86 17.88 24.08 16.71 10.94 29.59 22.06 21.46 26.43 67.21 46.48 3 376931 Transcript 0 0.00 6.25 3.16 17.61 0.00 0.00 5.87 0.00 6.22 2.66 0.00 0.00 0.00 0.00 4.45 0.00 0.00 11.52 22.12 9.59 0.00 2.88 0.00 4 292586 Transcript 1 14.15 12.23 16.47 14.32 4.24 16.30 14.09 42.47 29.08 49.32 59.01 20.71 0.00 14.42 17.80 41.27 30.20 48.83 39.72 14.57 103.42 5.45 27.66 5 376929 Transcript 0 0.00 5.72 3.05 1.90 0.00 2.33 1.72 4.35 0.00 0.00 0.00 11.70 0.00 2.35 0.00 4.36 8.79 8.71 0.00 0.00 0.00 0.00 0.00 6 ER1a ExonRegion 1 8.06 3.39 1.98 0.52 3.57 8.12 4.29 0.99 2.76 2.57 0.83 0.00 0.00 2.63 16.85 5.52 4.09 12.14 6.37 8.31 5.67 1.39 3.64 7 E1_Ac KnownBoundary 0 121.43 22.43 14.69 29.40 11.80 51.67 49.99 15.44 12.76 6.90 4.69 0.00 0.00 39.26 26.95 24.69 16.83 80.17 33.04 47.62 18.04 17.08 42.08 8 ER1b ExonRegion 0 43.26 15.70 8.81 8.26 10.70 30.95 30.16 7.62 5.94 4.19 4.83 0.00 0.00 22.43 27.83 17.37 14.24 38.05 24.39 29.52 17.01 9.90 24.04 9 ER1c ExonRegion 1 175.31 114.67 28.82 73.56 103.28 167.02 126.43 54.66 76.02 60.73 49.43 0.84 5.12 55.62 61.27 105.26 54.27 151.47 81.79 99.12 122.12 55.47 120.44 10 E1a_E2a KnownJunction 0 10.82 21.64 36.43 63.83 3.65 7.67 10.42 59.15 77.83 71.16 10.37 11.55 0.00 7.36 0.00 15.81 0.00 93.97 3.86 11.89 21.44 3.12 18.87 11 E2_Aa NovelBoundary 0 28.00 18.35 0.00 13.12 20.29 14.37 12.67 2.55 1.79 1.21 2.16 5.70 13.64 2.47 5.32 0.00 0.00 8.12 0.00 0.00 5.07 2.88 4.18 12 ER2a ExonRegion 0 21.94 12.81 22.44 36.80 16.90 15.47 17.90 40.62 41.52 44.23 32.34 42.07 15.95 15.05 17.89 29.92 18.49 71.69 44.33 27.30 46.42 12.95 24.62 13 E2_Da NovelBoundary 0 0.00 5.92 10.79 17.85 8.23 0.00 4.42 4.48 13.89 10.99 9.63 12.45 0.00 2.47 4.57 8.29 4.77 8.58 3.76 17.19 17.98 11.33 4.01 14 E2a_E3a KnownJunction 0 0.00 0.00 1.21 5.26 4.33 4.77 4.37 4.39 10.97 3.01 14.11 6.30 0.00 10.24 4.45 4.36 3.83 11.69 14.40 6.33 2.53 8.82 0.00 15 E2a_E4a KnownJunction 0 14.15 12.23 16.47 14.32 4.24 16.30 14.09 42.47 29.08 49.32 59.01 20.71 0.00 14.42 17.80 41.27 30.20 48.83 39.72 14.57 103.42 5.45 27.66 16 E2a_E5a KnownJunction 0 0.00 5.72 3.05 1.90 0.00 2.33 1.72 4.35 0.00 0.00 0.00 11.70 0.00 2.35 0.00 4.36 8.79 8.71 0.00 0.00 0.00 0.00 0.00 17 E2a_E6a KnownJunction 0 0.00 6.25 3.16 17.61 0.00 0.00 5.87 0.00 6.22 2.66 0.00 0.00 0.00 0.00 4.45 0.00 0.00 11.52 22.12 9.59 0.00 2.88 0.00 18 I2 Intron 1 0.00 1.03 1.84 6.15 4.05 1.85 1.34 2.60 4.65 5.18 10.74 0.00 0.00 3.96 6.20 4.50 5.00 11.14 3.22 12.89 10.01 5.26 7.41 19 I2_AR1 ActiveIntronRegion 1 0.00 1.05 1.88 6.26 4.14 1.89 1.36 2.65 4.74 5.28 10.95 0.00 0.00 4.02 6.33 4.59 5.10 11.33 3.28 13.15 10.22 5.37 7.56 20 E3_Aa NovelBoundary 0 2.74 6.45 11.62 32.06 17.91 0.00 8.74 24.85 23.99 20.93 9.05 6.00 0.00 0.00 23.12 7.35 8.04 34.20 37.55 41.35 21.68 5.88 19.80 21 ER3a ExonRegion 0 8.52 1.30 8.35 8.08 17.23 1.60 6.16 11.04 16.61 13.39 18.24 12.12 11.31 16.69 23.50 8.73 9.04 20.72 20.35 21.01 26.06 18.88 16.00 22 E3_Da NovelBoundary 0 14.52 9.54 9.55 21.91 8.66 2.90 22.21 8.21 14.50 10.05 0.00 18.61 0.00 0.00 22.25 8.54 16.74 14.34 4.52 9.33 11.49 13.96 19.97 23 E3a_E4a KnownJunction 0 13.34 0.00 9.11 14.08 14.94 7.61 3.71 2.55 9.00 17.76 18.37 18.16 8.28 14.72 28.31 23.33 8.88 21.56 0.00 18.34 12.54 37.29 49.68 24 I3 Intron 0 11.44 9.19 7.95 18.81 12.69 5.36 8.76 8.24 11.16 7.82 5.65 9.18 4.27 5.25 9.75 13.27 4.55 29.67 11.24 18.18 11.18 5.40 13.60 25 I3_SR1 SilentIntronRegion 0 10.33 9.77 8.38 18.83 13.12 3.99 7.29 5.58 7.91 5.37 4.56 8.07 2.10 3.84 6.88 10.80 2.39 19.09 12.20 11.49 7.55 4.19 11.16 26 I3_AR1 ActiveIntronRegion 0 15.54 8.64 8.92 24.03 15.51 8.33 12.79 9.57 15.31 12.09 7.64 13.19 6.73 8.50 14.32 15.47 7.22 43.28 13.57 25.19 16.92 8.20 18.56 27 I3_SR2 SilentIntronRegion 0 7.59 8.84 5.62 10.93 7.54 3.76 5.75 11.88 11.79 6.57 4.95 5.48 5.16 3.33 8.92 15.23 5.08 31.53 5.70 21.81 10.17 3.74 11.29 28 E4_Aa NovelBoundary 0 27.26 17.89 11.03 39.42 33.62 5.51 32.42 35.86 12.59 14.96 7.79 6.15 6.82 7.71 0.00 16.41 17.30 38.34 13.08 26.85 23.23 0.00 42.94 29 ER4a ExonRegion 0 20.21 18.10 24.71 43.44 18.88 24.44 15.68 40.12 68.71 60.24 63.46 33.47 15.91 57.48 78.73 55.13 54.56 86.60 49.71 54.41 124.47 49.49 74.57 30 E4_Da NovelBoundary 0 37.93 25.98 19.37 29.83 0.00 0.00 8.48 10.23 29.28 16.68 2.58 6.30 14.28 15.01 16.94 11.45 0.00 45.14 12.80 23.46 35.58 3.12 16.30 31 E4a_E5a KnownJunction 0 48.53 15.00 31.16 71.75 40.41 18.74 26.06 53.15 86.92 65.41 40.12 73.22 19.97 49.09 111.87 98.61 33.85 168.22 50.64 39.50 55.41 84.07 111.06 32 E4a_E6a NovelJunction 0 3.78 0.00 9.91 12.59 6.54 9.88 3.62 6.33 10.01 13.51 2.16 0.00 0.00 0.00 14.71 6.84 4.11 25.45 4.24 6.01 2.29 14.45 7.17 33 E5_Aa NovelBoundary 0 42.38 15.92 17.06 26.24 22.24 15.16 8.30 2.55 25.95 14.77 11.27 0.00 13.47 7.48 5.19 16.15 0.00 42.78 17.04 14.06 16.74 15.49 77.94 34 ER5a ExonRegion 0 67.95 29.62 46.18 81.79 79.92 47.65 37.77 70.18 74.79 80.27 73.63 60.10 22.96 56.14 94.63 123.73 51.16 203.33 108.43 69.88 108.65 65.14 109.08 35 E5_Da NovelBoundary 0 3.78 2.57 15.29 35.19 12.22 0.00 2.21 22.10 20.14 7.33 0.00 0.00 0.00 5.47 0.00 11.45 9.54 37.60 9.13 12.59 3.09 8.70 54.80 36 E5a_E6a KnownJunction 1 23.04 57.75 54.55 100.25 137.52 88.13 56.04 82.02 87.01 102.37 58.33 70.37 6.82 43.68 131.03 100.32 70.87 184.22 84.90 61.42 110.03 32.21 39.86 37 I5 Intron 0 8.60 12.98 7.80 20.38 11.98 5.67 7.22 14.19 10.89 8.80 2.19 2.42 3.31 1.85 5.01 5.97 3.74 16.60 8.36 7.77 6.46 10.84 41.91 38 I5_AR1 ActiveIntronRegion 0 11.36 9.01 13.97 31.89 17.60 6.89 11.37 15.56 18.03 11.70 3.11 0.96 4.37 2.69 3.83 6.38 6.65 28.36 8.98 11.42 8.28 12.87 49.67 39 I5_SR1 SilentIntronRegion 0 7.28 15.93 4.18 13.69 8.84 4.95 4.89 13.91 6.63 7.25 1.71 3.53 2.60 1.40 5.96 5.89 2.04 9.79 7.92 5.82 5.41 9.73 37.80 40 E6_Aa NovelBoundary 0 10.67 26.11 12.86 44.38 8.66 4.88 7.11 26.37 12.73 12.03 2.68 0.00 0.00 2.47 15.95 0.00 0.00 18.86 4.80 15.08 2.72 17.15 36.28 41 ER6a ExonRegion 0 88.10 96.74 58.05 131.65 97.12 126.65 75.83 97.93 103.53 103.56 67.91 46.72 23.48 100.60 117.00 104.08 65.52 235.24 90.02 91.27 116.71 73.67 109.96 42 E6_Da NovelBoundary 0 10.67 9.74 8.07 27.77 0.00 0.00 6.14 15.36 18.17 3.47 2.05 0.00 13.64 0.00 0.00 17.09 9.16 31.26 4.71 0.00 8.77 11.76 55.74 43 E6a_E7a KnownJunction 0 111.95 108.80 62.68 119.33 101.61 69.16 79.40 102.36 80.73 95.23 31.74 24.76 6.33 118.72 139.32 128.86 77.14 239.19 101.74 104.70 110.95 80.95 127.96 44 I6 Intron 0 3.05 4.94 6.51 9.56 3.25 2.37 3.72 7.04 10.76 6.10 2.93 2.49 1.13 4.12 4.13 4.29 3.01 18.33 10.64 6.46 8.86 10.44 51.49 45 I6_AR1 ActiveIntronRegion 0 3.98 6.14 8.02 12.14 3.66 2.84 4.58 8.35 13.46 7.51 3.61 3.74 1.59 4.70 4.49 6.43 2.88 24.22 14.06 6.14 10.16 12.39 54.77 46 I6_SR1 SilentIntronRegion 0 1.69 1.63 4.45 5.13 0.00 4.46 1.41 2.25 5.48 1.22 2.00 0.00 1.56 3.19 0.00 0.00 1.87 5.17 6.69 2.41 5.51 9.79 55.89 47 I6_SR2 SilentIntronRegion 0 1.13 2.71 3.41 4.34 2.86 0.98 2.12 4.81 5.41 3.65 1.55 0.00 0.00 2.96 4.01 0.00 3.53 6.87 3.40 7.92 6.47 6.12 43.91 48 E7_Aa NovelBoundary 0 3.48 0.00 7.10 27.84 0.00 5.00 0.00 8.91 25.75 10.10 2.37 5.55 0.00 2.30 8.90 3.16 4.77 16.08 28.14 14.45 3.15 8.63 36.62 49 ER7a ExonRegion 0 49.04 79.29 42.02 88.45 37.73 63.85 37.30 73.66 65.29 90.03 35.30 25.19 11.99 66.59 106.72 73.86 56.72 182.95 73.44 91.44 91.58 45.22 98.31 50 E7_Da NovelBoundary 0 42.08 33.68 57.12 83.67 50.59 52.81 42.88 71.02 77.08 73.17 49.43 18.31 27.27 72.52 71.45 115.87 51.15 196.45 89.32 67.37 70.43 87.38 244.05 51 E7a_E8a KnownJunction 0 13.63 78.60 14.64 25.07 4.33 32.08 22.96 29.00 29.60 41.69 9.37 0.00 11.36 16.89 23.86 7.86 0.00 59.03 37.46 34.45 39.35 8.51 12.21 52 I7 Intron 1 67.51 33.13 35.69 72.29 48.97 47.28 27.10 65.86 65.59 56.71 40.66 23.41 31.63 73.71 93.43 76.39 41.69 182.71 69.06 68.72 85.74 53.46 138.44 53 I7_AR1 ActiveIntronRegion 1 59.17 32.59 35.46 74.34 54.77 51.91 28.96 64.10 67.60 67.77 41.37 28.63 42.09 81.61 88.55 91.09 50.19 227.09 72.29 85.86 88.05 58.24 146.37 54 I7_AR2 ActiveIntronRegion 1 56.97 27.78 34.00 72.76 42.78 40.64 22.91 69.33 68.54 50.68 45.57 26.57 32.33 71.52 103.41 81.50 38.41 169.25 82.84 58.35 85.15 53.76 143.83 55 I7_AR3 ActiveIntronRegion 1 98.69 43.79 40.21 71.68 52.83 53.44 32.36 65.45 60.78 53.40 33.48 12.08 17.35 69.32 88.05 51.01 36.88 150.32 45.38 64.42 87.04 48.58 124.56 56 E8_Aa NovelBoundary 1 308.50 69.72 82.79 145.20 72.84 57.47 40.10 120.59 93.37 93.86 95.02 37.81 11.85 103.24 203.10 80.32 59.75 171.12 30.49 87.18 208.99 546.57 538.90 57 ER8a ExonRegion 0 15.49 25.44 10.03 22.17 5.71 15.12 8.72 22.03 24.20 29.24 12.53 1.13 4.88 11.81 20.01 9.95 5.08 35.69 18.58 18.73 25.48 9.29 13.12 58 E8_Da KnownBoundary 1 90.16 11.45 58.93 64.53 29.20 11.70 10.11 47.28 45.83 56.17 22.74 0.00 19.97 2.47 50.93 21.70 22.25 10.11 3.67 25.12 31.14 63.44 60.61 59 E8a_E9a KnownJunction 0 27.04 18.42 8.43 29.53 20.37 27.31 14.71 32.78 35.82 42.09 29.11 6.00 8.28 30.67 23.24 12.56 4.58 48.91 51.20 29.79 30.33 20.02 7.00 60 ER8b ExonRegion 0 2.90 7.37 0.78 1.29 0.28 4.89 1.49 1.53 1.29 0.79 0.20 0.75 0.00 0.61 1.54 0.68 0.19 0.97 0.96 0.76 1.00 0.51 0.69 61 E8_Db NovelBoundary 0 175.96 6.31 25.58 14.42 20.63 8.69 23.89 11.50 27.34 16.79 19.85 26.56 26.62 24.43 36.22 17.43 27.86 25.37 18.17 6.52 44.23 371.63 348.03 62 E8_Dc NovelBoundary 0 124.02 3.35 5.38 18.51 17.32 5.79 11.22 10.15 8.68 3.33 21.48 0.00 0.00 3.00 6.30 17.43 19.07 16.62 4.80 6.52 22.05 205.81 204.36 63 ER8c ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 64 E9_Aa NovelBoundary 0 891.05 162.54 166.29 319.31 840.58 170.58 228.41 388.97 411.69 234.88 247.59 358.47 309.40 258.23 451.20 371.44 239.92 110.39 237.94 51.58 569.46 2034.91 1896.17 65 ER9a ExonRegion 0 92.46 45.05 37.03 62.09 48.32 40.17 33.97 50.09 82.18 43.11 25.19 32.78 31.31 32.36 48.14 45.74 35.24 62.53 40.05 44.96 81.47 316.87 202.53