Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 DBN1 Gene 0 71.25 199.49 396.57 263.88 172.02 284.20 207.75 427.19 342.65 635.18 177.08 17.49 84.00 179.98 259.22 60.29 49.93 1050.44 810.69 523.72 403.39 236.18 207.22 2 309007 Transcript 0 3.39 1.42 0.25 0.14 2.68 2.17 4.77 2.25 0.49 1.26 1.70 0.00 0.00 0.81 1.45 1.19 0.66 3.33 0.00 2.55 1.55 0.00 2.62 3 450502 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.66 0.00 2.49 2.41 0.00 0.00 4 477391 Transcript 0 2.38 6.10 12.64 15.05 5.58 26.85 7.18 16.78 16.36 37.80 3.88 0.49 7.28 3.22 6.95 2.62 1.88 41.17 21.44 23.16 16.43 12.94 7.95 5 393565 Transcript 0 0.00 14.27 0.00 3.70 0.00 0.00 0.00 22.84 99.74 23.80 7.11 0.00 6.33 2.47 0.00 0.00 0.00 41.62 4.80 17.39 17.05 0.00 8.28 6 472831 Transcript 0 2.44 3.94 16.65 10.22 2.38 11.45 7.51 14.99 12.34 22.64 3.78 0.26 10.55 8.95 11.53 3.07 0.83 42.18 19.66 33.40 13.47 6.16 5.87 7 292385 Transcript 0 2.27 3.19 5.69 1.86 1.25 1.90 4.66 9.60 11.31 20.29 3.01 0.00 2.95 8.12 6.33 0.55 0.80 41.10 8.08 18.34 4.01 2.41 2.27 8 393563 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 471767 Transcript 0 3.73 19.08 30.12 17.81 13.63 31.01 23.36 35.98 22.83 49.45 8.65 0.85 8.15 13.95 16.11 3.09 4.60 103.11 61.07 58.57 33.52 20.70 21.68 10 467054 Transcript 0 2.73 1.75 9.78 5.10 0.38 3.42 6.15 6.86 6.09 6.37 2.73 0.00 0.47 0.38 2.22 0.85 0.47 16.16 4.58 8.53 4.12 5.08 2.10 11 IG3 Intergenic 0 1.65 2.11 11.12 7.06 4.55 3.65 4.22 3.61 2.07 10.81 0.62 0.71 0.56 0.32 0.79 0.73 0.21 24.63 5.01 6.69 10.44 4.48 12.60 12 IG3_SR4 SilentIntergenicRegion 0 1.77 2.30 11.91 7.73 4.79 3.96 4.63 3.97 2.22 11.70 0.59 0.66 0.61 0.35 0.80 0.81 0.23 26.55 5.30 7.17 11.40 4.94 13.74 13 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 1.05 0.00 0.00 0.00 0.00 1.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.90 0.00 1.14 14 E1_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 3.01 2.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.09 0.00 4.18 15 ER1b ExonRegion 0 0.98 4.94 0.44 0.71 3.15 5.30 5.13 0.00 0.00 0.00 4.07 0.00 0.00 1.16 6.11 0.00 0.00 0.63 6.37 0.57 6.69 2.23 1.68 16 E1_Ac KnownBoundary 0 0.00 6.05 1.09 0.00 11.63 5.68 7.82 0.00 1.53 6.12 5.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 11.61 3.00 0.00 17 E1_Ad KnownBoundary 0 23.86 37.49 8.99 9.86 14.86 55.65 47.17 9.24 4.95 19.56 21.69 0.00 6.17 14.42 23.61 3.25 0.00 35.53 66.35 27.48 15.69 8.88 10.33 18 ER1c ExonRegion 0 10.91 21.59 2.64 3.35 11.94 31.60 27.09 1.46 3.04 3.62 20.22 4.00 0.00 17.49 26.56 0.00 0.25 9.38 43.61 17.35 21.19 9.14 8.81 19 ER1d ExonRegion 0 34.88 90.48 99.95 47.17 50.37 169.83 109.57 84.82 64.29 170.64 70.63 2.60 32.86 94.50 106.96 21.61 28.13 186.02 293.82 210.89 217.42 70.04 82.66 20 E1a_E4a KnownJunction 1 28.75 77.75 271.25 166.81 57.89 118.17 52.86 336.73 257.49 506.64 219.32 0.00 65.09 204.84 259.47 36.14 75.92 745.00 849.91 631.18 615.73 178.74 150.32 21 ER2a ExonRegion 0 1.53 2.51 3.71 1.95 1.61 3.72 3.31 6.19 6.27 11.19 3.72 0.00 1.22 3.60 5.76 1.43 0.40 25.27 6.91 14.31 4.25 3.27 3.54 22 E2a_E3a KnownJunction 0 0.00 2.83 1.18 0.00 0.00 0.00 4.33 9.41 10.27 9.05 0.00 0.00 6.82 10.60 0.00 0.00 0.00 22.01 0.00 6.14 0.00 0.00 0.00 23 ER3a ExonRegion 0 5.28 4.23 12.19 3.63 2.15 1.98 6.35 13.21 17.38 40.62 5.32 0.00 0.82 10.16 13.24 0.22 2.00 76.01 17.32 34.59 7.77 3.96 3.28 24 E3_Ab KnownBoundary 0 3.04 15.59 20.05 3.26 11.21 2.16 11.39 11.62 11.69 41.77 2.11 0.00 6.82 17.25 10.63 8.12 3.93 111.59 24.94 24.93 8.59 0.00 0.00 25 ER3b ExonRegion 0 0.95 6.06 11.01 1.95 3.18 2.40 16.11 13.96 8.99 34.84 7.05 0.00 1.29 7.85 5.48 1.21 1.45 79.98 17.36 27.31 3.85 2.45 3.10 26 E3a_E4a KnownJunction 0 0.00 0.00 3.13 0.00 0.00 0.00 15.59 4.48 6.05 18.62 2.68 0.00 0.00 5.18 5.93 0.00 0.00 15.67 0.00 5.94 0.00 0.00 0.00 27 ER4a ExonRegion 0 30.08 147.65 405.25 256.13 107.08 165.27 118.05 452.85 351.50 715.26 261.63 19.64 59.21 305.62 370.74 109.54 71.26 1787.60 1246.10 845.40 604.13 300.85 303.58 28 E4a_E5a KnownJunction 0 66.09 206.08 583.57 365.62 203.91 265.36 192.86 618.70 457.23 868.55 255.54 12.60 59.57 362.94 520.68 151.16 68.35 2425.85 1349.40 961.12 565.39 384.73 455.33 29 ER5a ExonRegion 0 65.84 181.24 606.11 349.08 271.08 418.35 305.53 654.76 545.21 1072.16 343.06 25.98 118.87 274.72 374.21 100.47 82.99 2177.79 1094.69 1008.28 742.98 389.64 290.36 30 E5a_E6a KnownJunction 0 72.98 295.93 779.13 410.57 482.68 793.63 666.90 824.27 617.50 1130.81 386.57 31.66 166.39 292.72 361.09 67.08 62.46 1915.27 1083.98 1035.07 880.64 365.50 258.48 31 E6_Aa NovelBoundary 0 3.19 0.00 11.21 25.04 3.90 16.07 7.46 12.57 3.18 14.75 0.00 13.35 0.00 0.00 4.45 4.36 0.00 33.70 42.07 21.16 7.97 5.88 7.85 32 ER6a ExonRegion 0 71.28 307.40 733.15 429.04 263.69 483.14 413.09 774.44 641.04 1181.74 360.58 35.10 186.66 341.11 428.30 105.29 80.01 2070.10 1167.20 1145.16 811.23 375.73 310.34 33 E6_Da KnownBoundary 0 3.56 0.00 9.40 8.69 0.00 11.02 6.40 10.80 10.94 15.69 0.00 0.00 6.82 4.65 14.83 4.36 0.00 18.90 23.25 26.27 11.74 0.00 0.00 34 E6a_E6b KnownJunction 0 105.87 451.43 721.20 490.65 212.65 353.38 283.88 866.95 682.37 1350.94 340.24 38.71 196.90 319.86 279.38 117.83 85.93 1895.54 1245.12 1351.59 701.79 371.69 326.68 35 ER6b ExonRegion 0 2.44 3.94 16.65 10.22 2.38 11.45 7.51 14.99 12.34 22.64 3.78 0.26 10.55 8.95 11.53 3.07 0.83 42.18 19.66 33.40 13.47 6.16 5.87 36 E6_Ab KnownBoundary 0 0.00 6.58 13.54 8.92 3.31 7.89 5.96 12.03 16.81 8.86 0.00 0.00 6.82 4.89 4.45 0.00 0.00 38.59 13.18 20.96 18.29 3.12 8.71 37 E6_Ac KnownBoundary 0 191.59 429.92 734.30 453.06 349.66 561.15 427.72 878.82 688.19 1281.99 427.16 44.26 146.42 378.60 676.81 127.06 100.98 1984.95 1710.54 1699.62 1004.75 550.73 383.45 38 ER6c ExonRegion 0 113.93 369.55 687.98 410.75 211.57 393.95 297.43 799.56 639.45 1252.89 355.19 39.86 176.60 370.69 538.03 125.55 100.85 1740.01 1366.52 1504.91 868.49 445.08 350.47 39 ER6d ExonRegion 0 93.22 247.28 712.95 364.65 212.80 409.49 330.82 642.69 540.40 1098.61 288.60 41.15 211.93 310.86 478.19 103.24 84.50 1128.15 1078.53 1071.32 712.06 411.43 297.00 40 E6b_E7a KnownJunction 1 151.36 396.97 880.25 446.00 364.77 582.45 445.96 866.99 691.86 1375.12 367.51 82.23 305.01 400.03 562.34 160.90 99.39 2601.28 1726.73 1283.01 838.87 488.15 481.79 41 ER7a ExonRegion 0 150.27 392.98 904.80 529.27 409.94 692.42 459.87 1016.26 786.01 1426.85 473.49 49.12 377.07 478.43 589.03 174.40 145.62 2691.08 2153.02 1396.91 983.87 516.45 549.91 42 E7a_E8a KnownJunction 0 248.49 491.89 1013.86 618.54 529.46 834.92 683.90 1093.27 890.30 1522.29 432.11 59.42 408.90 453.06 655.42 203.45 193.08 3035.42 2264.25 1558.62 1056.15 587.11 691.10 43 ER8a ExonRegion 0 159.03 357.54 798.16 491.10 304.86 601.70 431.35 925.61 809.12 1386.56 390.00 66.96 319.57 406.80 619.99 140.04 149.17 2610.36 2042.53 1242.24 912.29 579.73 492.29 44 E8_Da KnownBoundary 0 6.15 22.17 54.88 27.40 7.22 31.86 36.52 79.03 31.31 76.85 8.00 0.00 5.68 12.48 20.03 8.37 0.00 173.90 55.63 80.41 25.76 16.96 30.05 45 E8a_E8b KnownJunction 0 141.28 641.66 912.98 661.25 568.93 774.78 644.73 1087.27 973.25 1574.27 559.46 91.53 421.56 461.24 654.80 175.00 186.26 2920.85 2608.92 1589.75 1078.14 682.20 559.30 46 ER8b ExonRegion 0 3.73 19.08 30.12 17.81 13.63 31.01 23.36 35.98 22.83 49.45 8.65 0.85 8.15 13.95 16.11 3.09 4.60 103.11 61.07 58.57 33.52 20.70 21.68 47 E8_Db NovelBoundary 1 52.82 239.56 352.86 258.84 151.61 268.99 321.55 472.15 426.21 705.69 196.68 5.85 137.98 164.81 198.53 90.06 83.40 946.26 1021.86 664.87 446.03 316.70 264.71 48 ER8c ExonRegion 0 102.65 456.03 784.24 528.46 367.92 663.84 506.08 930.34 848.22 1417.86 479.84 61.69 406.86 462.87 640.45 148.61 180.72 2247.33 2175.60 1375.00 999.38 618.81 486.75 49 ER8d ExonRegion 1 79.06 338.64 692.87 569.02 322.90 541.75 435.92 892.91 862.07 1319.60 369.54 29.57 341.02 367.46 573.86 149.16 132.32 2297.10 2199.36 1120.80 817.84 616.65 492.56 50 E8c_E10a KnownJunction 1 127.28 500.90 782.50 762.34 577.33 861.15 652.24 1018.80 956.65 1423.01 473.33 48.02 462.47 426.69 841.71 228.57 144.46 2827.58 3537.14 1286.14 895.83 829.35 761.27 51 ER9a ExonRegion 0 5.46 3.50 12.82 8.60 0.77 6.84 10.06 11.25 12.18 12.74 5.46 0.00 0.95 0.77 4.45 1.70 0.95 32.31 9.16 17.07 8.23 7.84 4.21 52 E9a_E10a KnownJunction 0 0.00 0.00 6.74 1.60 0.00 0.00 2.25 2.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 53 ER10a ExonRegion 0 115.84 450.54 797.19 630.81 468.97 859.81 429.01 997.84 881.13 1438.41 495.98 60.76 391.85 423.35 735.56 188.93 134.46 3414.55 2937.75 1316.66 965.52 771.39 671.37 54 E10a_E11a KnownJunction 0 151.80 476.49 991.51 729.34 405.86 621.18 352.15 1084.35 916.54 1632.19 518.24 54.77 330.82 314.15 549.73 134.15 153.44 3730.22 2775.23 1311.20 1013.58 697.45 663.44 55 ER11a ExonRegion 0 153.29 349.92 929.35 593.24 291.85 513.36 378.44 1117.88 971.40 1777.42 599.20 102.48 417.64 414.45 719.35 193.45 144.60 3627.16 2604.83 1403.08 1208.72 706.18 683.27 56 E11_Da NovelBoundary 0 28.67 16.44 35.33 54.77 43.97 140.94 26.10 54.30 59.92 72.69 9.32 0.00 0.00 6.83 8.90 0.00 0.00 135.88 59.67 43.66 37.50 29.94 23.22 57 E11a_E12a KnownJunction 0 0.00 3.35 5.74 1.60 3.57 5.68 0.00 49.70 132.00 30.89 4.58 0.00 13.80 0.00 0.00 0.00 0.00 75.36 12.99 16.36 22.55 9.00 10.93 58 E11a_E13b KnownJunction 0 173.96 303.04 1012.41 551.84 196.10 344.63 281.93 971.57 738.30 1719.73 494.70 50.42 273.36 296.02 634.28 100.49 166.25 2153.50 1692.19 1391.73 1097.72 534.45 434.16 59 ER12a ExonRegion 0 11.27 11.26 12.32 20.10 11.46 54.80 11.95 42.71 107.20 60.44 5.41 1.32 9.38 2.82 10.36 3.38 1.24 106.14 55.91 67.67 29.73 28.31 21.90 60 E12_Da KnownBoundary 0 7.11 0.00 12.48 13.75 4.24 12.49 9.67 8.54 17.56 23.05 0.00 0.00 6.82 0.00 0.00 0.00 0.00 43.57 33.41 22.18 12.11 14.82 8.45 61 E12a_E13b KnownJunction 0 0.00 14.27 0.00 3.70 0.00 0.00 0.00 22.84 99.74 23.80 7.11 0.00 6.33 2.47 0.00 0.00 0.00 41.62 4.80 17.39 17.05 0.00 8.28 62 E12_Db KnownBoundary 0 0.00 6.31 9.96 8.19 0.00 15.39 3.93 19.80 23.35 29.04 0.00 0.00 0.00 2.12 0.00 0.00 0.00 13.47 7.53 8.82 13.53 2.51 4.35 63 E12b_E13c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.66 0.00 2.49 2.41 0.00 0.00 64 ER12b ExonRegion 0 12.17 6.61 23.28 21.47 4.01 40.34 12.91 25.93 37.05 57.35 0.00 0.00 4.69 2.44 17.41 2.97 0.00 44.81 43.00 26.06 24.24 15.63 14.68 65 ER12c ExonRegion 0 3.55 6.41 18.18 22.58 6.77 50.83 9.81 16.73 26.10 52.72 2.00 0.74 4.39 1.87 7.19 1.13 1.36 53.75 14.96 27.83 19.29 19.83 12.41 66 E12c_E13a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 67 ER13a ExonRegion 0 3.58 11.89 19.74 22.58 9.96 29.74 11.73 33.61 22.99 60.68 9.63 0.73 17.46 7.80 13.66 6.72 4.27 69.76 49.35 41.64 30.00 18.98 11.43 68 E13_Ab KnownBoundary 0 6.45 5.99 3.76 17.21 12.39 18.63 8.48 29.45 13.31 37.15 2.53 0.00 0.00 0.00 0.00 3.50 3.93 35.82 11.20 14.13 14.58 14.82 3.76 69 E13_Ac KnownBoundary 0 28.38 101.63 326.30 193.85 45.67 104.09 85.59 304.69 246.93 593.22 120.56 5.70 42.37 60.16 63.54 45.20 35.25 507.80 437.94 364.20 256.62 218.97 110.89 70 ER13b ExonRegion 0 124.87 304.53 914.13 552.31 187.30 347.50 268.76 931.20 836.48 1693.40 492.89 48.71 232.16 319.95 588.95 145.63 135.34 1988.18 1725.67 1269.14 1113.42 522.44 404.52 71 ER13c ExonRegion 0 101.58 292.59 697.08 351.37 166.49 444.75 289.25 684.46 595.58 1222.40 298.12 42.28 190.54 298.26 455.76 95.32 86.00 1170.47 1038.10 905.00 690.40 343.89 287.15 72 E13a_E14a KnownJunction 0 166.40 454.06 476.83 281.22 209.85 624.47 354.76 565.96 413.05 763.60 191.47 64.22 243.65 248.57 534.65 71.95 40.49 1433.62 1299.05 676.05 585.22 284.74 258.65 73 ER14a ExonRegion 0 92.90 250.55 606.60 360.53 168.17 392.85 251.74 589.88 489.68 1001.42 250.52 23.90 77.64 291.17 430.19 75.45 75.04 1560.31 1124.10 760.78 628.70 308.04 282.28 74 E14_Da KnownBoundary 0 87.50 299.49 790.66 415.20 169.61 415.84 332.41 661.25 506.24 1041.84 268.02 18.31 92.04 301.20 416.59 111.25 94.06 1954.15 1164.36 820.38 753.75 258.04 359.89 75 ER14b ExonRegion 0 81.35 253.84 626.65 329.08 155.50 372.85 263.45 557.25 423.53 901.65 260.40 11.46 61.85 277.50 384.20 73.19 81.53 1313.81 1071.14 653.10 685.45 292.26 274.48 76 E14_Db KnownBoundary 0 119.43 335.73 800.06 537.16 162.22 425.89 338.82 793.84 624.07 1222.97 174.57 6.30 62.50 262.82 288.89 85.53 73.49 2266.05 827.51 660.46 585.96 226.14 272.74 77 ER14c ExonRegion 0 141.79 386.73 830.07 525.57 226.60 561.12 348.40 780.29 587.82 1168.81 322.66 13.71 88.84 337.40 460.63 110.10 90.34 2153.50 1468.76 871.10 756.32 360.66 367.70 78 E14c_E15a KnownJunction 1 241.01 592.07 743.35 565.40 257.98 562.46 537.46 809.98 607.69 1060.89 306.92 0.00 118.17 285.36 481.12 105.19 68.26 2030.80 1296.41 869.15 612.77 410.08 376.02 79 ER15a ExonRegion 1 241.08 660.22 963.62 757.79 417.55 682.03 603.33 968.61 726.78 1354.69 371.79 18.96 56.51 342.44 466.43 121.80 102.97 2448.32 1629.73 1044.33 775.51 463.67 424.10 80 E15a_E16a KnownJunction 0 218.04 631.33 1122.43 902.82 637.01 942.41 747.01 1020.65 749.47 1350.14 322.87 17.11 69.15 342.81 466.16 109.29 80.97 2090.16 1526.07 1278.73 773.33 315.47 526.78 81 ER16a ExonRegion 0 161.86 480.39 755.32 600.30 510.89 554.90 457.36 837.85 595.09 1033.74 263.13 17.60 68.79 289.19 403.58 98.42 63.51 1615.41 1421.91 746.91 578.73 430.07 358.60 82 E16_Da KnownBoundary 0 98.24 252.32 192.90 158.95 271.39 295.06 244.44 277.62 191.14 279.12 61.33 0.00 6.66 42.62 46.23 33.67 17.11 547.18 632.77 108.60 161.36 122.28 174.99 83 E16_Db KnownBoundary 0 0.00 0.00 6.98 17.95 0.00 0.00 0.00 7.02 8.68 8.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.48 0.00 0.00 0.00 0.00 0.00 84 E16_Dc KnownBoundary 0 34.01 88.41 74.13 76.25 138.03 148.95 158.15 175.35 86.66 141.83 28.95 0.00 0.00 38.97 56.62 21.19 22.16 145.92 290.55 131.03 81.18 112.49 42.43 85 ER16b ExonRegion 1 137.57 322.32 242.62 223.51 355.87 363.09 347.54 391.49 256.90 419.77 113.07 4.33 14.07 125.87 203.09 50.53 36.31 719.70 832.97 257.45 260.04 213.56 190.88 86 ER16c ExonRegion 1 122.76 301.84 227.04 202.49 331.79 348.42 338.56 384.21 242.08 398.30 100.79 3.09 14.07 129.47 205.57 45.86 35.37 674.69 780.41 231.61 243.98 207.16 179.14 87 ER16d ExonRegion 0 35.96 89.78 77.67 80.86 89.52 98.45 91.24 164.20 106.21 169.59 48.69 3.39 9.68 64.70 75.30 16.58 12.25 241.33 225.80 164.04 108.96 83.65 69.66 88 ER16e ExonRegion 0 6.77 2.85 0.49 0.27 5.35 3.30 9.53 4.49 0.99 2.52 1.93 0.00 0.00 1.62 2.90 2.38 1.32 6.65 0.00 5.11 2.20 0.00 4.11