Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TSPAN17 Gene 0 52.09 55.36 57.48 60.39 51.63 84.69 54.23 106.45 84.17 95.98 61.28 14.14 15.68 57.72 48.47 45.64 39.43 103.61 84.57 61.53 117.23 66.66 55.44 2 310032 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 405525 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 298564 Transcript 0 4.18 5.65 5.10 6.47 3.66 13.83 6.70 9.53 5.00 14.50 2.49 1.66 1.28 6.29 1.46 4.45 3.69 16.15 13.39 8.59 11.33 8.95 9.13 5 414405 Transcript 0 8.98 9.44 6.14 7.55 3.32 13.95 9.50 15.58 17.69 25.44 7.02 1.47 0.45 11.19 10.79 5.99 4.78 22.89 9.18 12.29 15.00 9.29 10.88 6 ER1a ExonRegion 0 6.50 8.29 1.64 1.15 8.33 42.07 13.46 9.36 5.80 16.67 14.65 0.00 0.00 6.44 3.40 11.45 4.50 30.87 55.28 5.59 11.09 6.95 13.29 7 E1_Ab KnownBoundary 0 19.93 49.53 6.24 7.39 18.17 63.49 17.40 13.31 17.33 33.79 24.95 0.00 0.00 19.37 18.30 49.39 20.20 49.54 40.19 17.13 31.32 35.88 55.40 8 ER1b ExonRegion 1 11.16 14.31 12.33 14.92 11.93 24.71 16.22 30.53 27.81 53.45 40.47 3.79 0.00 24.78 14.81 25.43 17.91 58.26 71.62 27.91 82.78 34.59 34.39 9 E1a_E2a KnownJunction 1 3.41 40.32 41.72 30.40 53.48 70.19 39.44 82.56 74.22 100.54 50.96 12.45 0.00 91.00 45.61 106.98 25.53 110.76 175.91 65.52 106.07 116.10 101.41 10 E1a_E4a KnownJunction 0 3.70 0.00 0.00 10.52 0.00 4.60 10.82 11.01 3.01 6.82 2.42 0.00 0.00 7.30 0.00 3.93 8.79 10.86 28.14 0.00 8.53 9.37 18.52 11 ER2a ExonRegion 1 13.11 25.64 39.00 27.34 37.15 96.04 31.57 74.36 65.27 91.71 53.78 16.13 2.67 56.37 30.15 62.53 23.30 100.72 97.56 47.60 91.69 60.46 62.71 12 E2a_E3a KnownJunction 0 9.11 21.51 40.12 42.75 27.16 124.36 46.02 59.11 64.35 73.84 49.59 36.91 12.34 49.03 38.94 36.06 34.41 114.66 69.08 50.24 98.47 49.23 50.02 13 ER3a ExonRegion 0 16.40 24.93 58.08 64.82 37.88 71.87 44.34 109.45 100.78 129.16 77.83 23.86 16.62 63.34 57.12 44.10 43.11 83.61 78.77 78.49 140.38 63.65 40.77 14 E3_Da NovelBoundary 0 13.56 3.16 7.39 5.39 0.00 0.00 2.12 15.81 0.00 10.23 5.11 0.00 0.00 2.47 0.00 8.37 13.09 17.12 40.57 5.88 11.43 12.31 7.77 15 E3a_E4a KnownJunction 0 67.27 35.85 65.82 55.60 35.82 56.96 57.81 132.87 118.43 169.85 127.24 47.57 26.30 128.55 75.78 74.94 71.62 153.00 184.10 92.87 187.06 67.30 105.00 16 ER4a ExonRegion 0 44.51 43.43 84.51 101.28 65.11 100.87 66.21 157.79 132.87 163.55 116.31 33.29 41.00 109.96 76.72 88.80 83.08 228.04 156.05 114.78 217.91 126.77 94.57 17 E4_Da NovelBoundary 0 26.60 2.89 6.12 4.76 24.28 44.75 26.72 50.15 23.52 40.10 14.16 6.30 0.00 13.07 5.19 8.72 9.16 17.08 17.60 25.38 28.23 23.15 8.02 18 E4a_E5b KnownJunction 0 28.08 42.76 83.91 93.29 59.34 127.94 85.23 150.08 111.69 116.47 89.65 50.57 26.13 90.00 96.30 88.87 72.84 199.76 155.39 75.55 213.38 93.93 86.13 19 E4a_E6a KnownJunction 0 0.00 9.27 1.74 4.89 0.00 2.33 2.25 6.78 1.22 24.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.28 0.00 10.87 12.29 3.00 0.00 20 I4 Intron 0 15.79 12.08 8.54 7.70 6.43 15.65 13.22 20.68 17.80 21.06 8.43 5.10 10.76 9.38 6.68 8.83 6.05 20.32 13.49 13.58 13.78 11.46 9.28 21 I4_AR1 ActiveIntronRegion 0 28.75 20.74 11.01 12.33 9.57 20.79 16.72 33.22 24.03 26.27 10.21 3.34 14.18 11.84 9.17 12.40 6.18 28.24 17.84 15.80 15.07 17.49 12.73 22 I4_SR1 SilentIntronRegion 0 13.62 7.33 3.32 4.19 3.71 13.29 12.61 13.42 15.18 23.50 10.62 11.43 23.01 10.79 6.23 15.42 5.61 15.92 15.27 17.62 18.83 12.17 6.21 23 E5_Aa NovelBoundary 0 9.93 6.12 3.37 5.89 3.74 14.25 16.43 18.44 28.56 33.66 11.53 0.00 0.00 16.72 10.38 16.06 0.00 32.87 8.09 28.38 16.87 6.25 0.00 24 ER5a ExonRegion 0 8.98 9.44 6.14 7.55 3.32 13.95 9.50 15.58 17.69 25.44 7.02 1.47 0.45 11.19 10.79 5.99 4.78 22.89 9.18 12.29 15.00 9.29 10.88 25 E5_Ab KnownBoundary 0 10.15 14.93 7.89 20.41 3.31 15.79 19.08 20.29 22.42 23.24 12.85 0.00 0.00 15.07 0.00 7.95 3.65 29.02 3.67 11.51 19.77 7.78 11.95 26 ER5b ExonRegion 0 27.01 40.85 78.41 65.53 64.56 105.74 63.13 141.58 107.84 122.75 94.06 19.02 44.61 106.01 77.31 80.37 80.83 221.33 147.01 89.82 198.92 89.16 93.69 27 E5a_E6a KnownJunction 0 42.97 43.94 72.06 74.38 66.04 100.40 87.49 138.42 105.35 85.77 86.39 12.00 32.95 67.28 69.97 66.31 50.30 173.19 129.13 111.34 155.31 116.47 81.09 28 ER6a ExonRegion 0 25.88 52.58 68.06 66.16 55.63 96.50 68.65 143.89 91.60 126.88 63.79 16.96 14.95 86.62 58.69 55.05 66.84 153.94 126.88 103.41 178.59 97.32 75.13 29 E6a_E7a KnownJunction 0 54.45 59.27 67.06 69.49 76.49 118.85 80.20 156.29 105.44 127.86 58.12 23.26 6.82 78.23 68.98 79.55 76.02 215.23 108.43 109.11 188.36 70.36 81.18 30 E6b_E7a KnownJunction 0 0.00 0.00 0.00 0.00 3.31 0.00 0.00 0.00 3.04 7.87 4.95 0.00 0.00 2.24 0.00 3.93 4.77 2.11 0.00 0.00 0.00 5.20 0.00 31 ER6b ExonRegion 0 0.00 0.90 0.41 0.30 2.68 0.00 0.15 0.19 3.16 7.01 3.87 0.00 0.00 2.53 0.32 2.97 6.24 0.21 2.12 0.47 2.69 4.17 0.33 32 ER7a ExonRegion 0 30.14 42.77 60.44 58.43 49.49 91.33 62.93 118.07 101.54 112.50 90.55 28.16 24.37 73.70 62.98 71.31 63.03 150.79 117.67 82.25 192.72 68.83 67.84 33 E7_Da KnownBoundary 0 18.23 22.04 23.89 21.11 3.23 25.50 13.73 29.41 30.12 27.43 7.58 0.00 0.00 14.30 4.45 19.91 14.12 69.89 35.86 41.80 18.22 36.25 20.40 34 E7a_E7b KnownJunction 0 36.08 41.05 39.68 45.38 68.59 115.90 65.80 124.91 101.88 102.29 85.92 18.76 52.43 104.42 66.01 70.49 80.32 128.09 114.17 88.01 177.05 65.58 74.10 35 ER7b ExonRegion 0 12.48 13.33 17.73 9.76 14.63 45.64 13.73 20.35 15.76 25.97 7.05 4.49 5.11 12.58 5.84 13.88 5.98 51.01 22.22 21.36 24.52 21.36 15.80 36 E7_Ab KnownBoundary 0 40.30 9.41 11.56 8.19 23.26 33.62 22.83 11.17 11.55 30.33 7.16 6.30 0.00 4.53 0.00 7.52 0.00 51.07 31.44 8.25 30.39 9.06 19.04 37 ER7c ExonRegion 0 66.12 50.07 43.73 51.60 69.48 115.85 69.30 117.77 96.13 113.19 92.65 15.97 24.42 105.34 55.92 56.57 67.16 144.63 121.04 96.62 193.09 66.67 96.10 38 ER7d ExonRegion 0 49.80 46.90 40.97 60.05 34.20 79.60 36.00 97.93 83.02 78.17 82.09 23.27 25.94 82.58 43.88 47.93 44.77 84.94 94.86 49.27 149.30 61.53 63.23 39 E7_Dc NovelBoundary 0 16.74 8.62 24.04 21.94 12.22 22.54 12.50 13.68 20.40 35.14 19.43 6.30 0.00 13.48 0.00 7.69 32.73 48.91 51.58 61.10 36.51 8.02 4.18 40 E7c_E8a KnownJunction 0 74.68 52.03 44.79 79.61 41.77 65.42 29.19 89.99 96.61 54.21 82.60 23.86 42.69 57.51 42.65 63.40 47.41 63.55 101.09 14.00 176.68 71.40 59.41 41 E7_Dd NovelBoundary 1 0.00 9.14 29.27 15.18 23.77 22.77 18.15 31.67 15.91 35.24 9.90 6.00 0.00 10.12 19.66 0.00 30.67 36.77 36.05 18.47 14.76 21.19 20.40 42 ER7e ExonRegion 0 0.53 0.00 0.92 0.68 0.00 2.75 0.00 0.00 0.00 0.29 0.48 2.16 0.00 5.28 0.00 0.00 0.00 0.46 3.19 2.13 0.00 2.08 2.20 43 I7 Intron 1 24.48 27.75 31.25 21.61 23.52 52.59 31.08 34.85 24.27 60.29 24.59 3.71 1.88 31.08 18.22 19.59 15.27 74.57 55.62 42.08 54.78 27.23 25.13 44 I7_AR1 ActiveIntronRegion 0 0.53 0.51 6.94 3.63 0.00 8.40 3.31 5.19 8.34 19.40 3.06 0.00 0.00 9.61 7.01 3.22 0.83 10.32 23.09 9.75 19.83 5.90 6.12 45 I7_AR2 ActiveIntronRegion 1 24.96 21.68 22.60 12.96 15.84 43.52 22.98 25.69 20.18 54.96 23.51 2.27 2.78 35.69 15.59 22.19 10.75 69.14 51.71 50.45 58.09 26.53 19.43 46 I7_SR1 SilentIntronRegion 1 35.98 29.24 47.47 28.94 19.58 74.04 32.85 55.31 31.90 77.89 27.76 4.96 0.00 38.77 10.43 29.12 23.58 113.68 69.02 52.05 63.94 41.73 49.20 47 I7_AR3 ActiveIntronRegion 1 30.51 36.60 47.65 34.78 32.74 66.48 42.09 52.74 36.17 88.90 31.71 4.17 3.55 35.19 24.91 15.96 20.31 97.38 53.86 49.22 64.21 31.22 21.35 48 I7_AR4 ActiveIntronRegion 1 17.63 27.39 20.18 15.98 25.62 43.68 30.18 21.63 16.70 40.30 21.41 4.08 1.27 24.94 19.73 18.56 12.25 51.74 57.54 31.97 46.92 21.06 22.70 49 E8_Aa NovelBoundary 0 102.09 131.10 107.48 90.73 81.92 81.77 73.18 136.90 66.46 159.35 69.97 12.60 12.99 59.27 20.52 19.40 20.76 198.56 124.62 55.22 73.45 48.99 44.90 50 ER8a ExonRegion 0 88.02 90.37 83.58 87.85 78.23 118.66 78.76 150.24 114.39 121.19 75.90 16.60 18.94 70.83 64.61 55.87 47.41 119.28 100.48 76.90 141.46 88.82 70.33 51 ER8b ExonRegion 0 0.91 2.91 2.98 1.36 3.06 1.83 1.89 8.15 0.00 1.80 1.93 0.00 0.00 2.09 1.24 2.55 0.00 0.79 3.64 2.13 0.94 0.00 4.61 52 IG39_AR6 ActiveIntergenicRegion 0 0.00 0.00 0.00 3.41 1.23 0.00 0.00 0.00 0.46 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.84 1.26 0.00 0.00 0.00 53 IG39_SR7 SilentIntergenicRegion 0 0.80 0.00 0.26 0.75 0.57 0.00 0.40 0.14 0.13 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.08 13.60 3.22 0.00 0.00 0.00 54 IG39_AR9 ActiveIntergenicRegion 0 0.19 7.07 6.35 11.35 6.94 3.92 10.53 4.07 6.53 10.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.94 15.34 6.05 0.00 0.00 0.00