Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PCDHGB8P Gene 0 1.19 8.61 2.25 8.83 3.63 8.26 1.45 5.19 22.73 8.47 0.08 0.16 0.04 0.28 0.25 0.00 0.41 23.88 9.40 8.15 13.12 12.84 6.77 2 394576 Transcript 0 0.30 3.87 0.98 3.82 1.77 6.74 0.90 1.82 7.55 1.59 0.06 0.00 0.00 0.06 0.00 0.00 0.00 9.53 6.55 3.18 7.63 4.78 2.98 3 305759 Transcript 0 1.37 11.63 7.07 12.31 7.41 4.17 5.75 13.09 31.28 20.37 0.00 0.00 0.00 0.51 0.00 0.00 0.00 6.96 0.00 4.47 1.87 14.75 3.03 4 IG20 Intergenic 0 1.27 19.85 7.85 22.56 13.73 2.41 5.62 5.32 20.24 7.98 0.15 0.48 0.33 0.38 0.35 0.11 0.00 5.93 2.76 2.46 1.19 0.84 0.68 5 IG20_SR1 SilentIntergenicRegion 0 1.28 20.07 7.94 22.77 13.88 2.43 5.69 5.36 20.37 8.03 0.15 0.49 0.33 0.39 0.35 0.12 0.00 5.95 2.80 2.49 1.19 0.85 0.69 6 ER1a ExonRegion 0 2.04 17.47 1.38 7.95 12.41 17.96 3.50 7.11 33.07 9.91 0.40 0.00 0.00 0.43 0.00 0.00 0.00 27.02 19.25 11.33 16.03 10.62 7.77 7 E1_Ab KnownBoundary 0 3.78 17.76 0.00 10.75 11.88 4.32 0.00 9.12 45.83 8.65 2.68 0.00 0.00 0.00 0.00 0.00 0.00 24.50 0.00 11.95 19.89 3.00 0.00 8 ER1b ExonRegion 0 2.15 15.27 4.07 16.46 6.20 14.66 2.40 9.26 41.51 15.38 0.14 0.33 0.08 0.52 0.50 0.00 0.82 44.60 17.19 15.14 24.45 23.76 12.67 9 E1_Da KnownBoundary 0 3.26 29.60 8.90 15.82 27.50 2.90 9.85 6.70 36.78 25.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.91 0.00 2.36 3.03 19.72 0.00 10 E1a_E2a KnownJunction 0 0.00 5.20 4.73 15.98 0.00 21.35 1.85 2.55 11.92 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21.22 17.60 8.12 21.62 12.74 7.94 11 ER1c ExonRegion 0 1.37 11.63 7.07 12.31 7.41 4.17 5.75 13.09 31.28 20.37 0.00 0.00 0.00 0.51 0.00 0.00 0.00 6.96 0.00 4.47 1.87 14.75 3.03 12 E1_Db NovelBoundary 0 0.00 8.81 7.01 20.81 23.51 5.56 10.47 14.62 48.38 17.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.37 13.18 3.20 0.00 22.90 3.24 13 I1 Intron 0 3.16 16.73 5.34 21.77 19.59 10.17 4.87 10.26 37.43 10.96 0.00 0.75 0.00 0.17 0.57 0.13 0.29 7.86 3.73 6.73 4.39 13.76 3.50 14 I1_AR1 ActiveIntronRegion 0 3.88 14.13 6.04 24.48 21.71 4.97 7.43 8.88 43.78 13.19 0.00 0.00 0.00 0.16 0.88 0.00 1.17 6.94 6.84 7.45 1.26 23.26 1.68 15 I1_AR2 ActiveIntronRegion 0 8.47 22.08 6.13 21.42 32.49 3.67 8.51 12.59 43.58 20.97 0.00 0.00 0.00 0.00 0.00 0.00 3.30 5.81 8.19 11.25 0.00 23.81 0.00 16 I1_AR3 ActiveIntronRegion 0 7.76 20.34 6.13 19.38 32.11 3.26 10.74 10.56 43.64 24.21 0.00 0.00 0.00 0.00 0.00 0.00 3.30 7.39 9.56 12.77 0.49 21.53 1.63 17 I1_AR4 ActiveIntronRegion 0 8.09 14.24 8.29 23.57 35.57 2.16 14.33 12.61 43.30 26.99 0.00 0.00 0.00 0.00 4.61 0.00 1.55 4.35 5.62 6.51 2.20 18.02 5.87 18 I1_AR5 ActiveIntronRegion 0 8.27 14.60 10.69 27.75 36.00 3.50 16.13 13.98 43.12 26.80 0.00 0.00 0.00 0.00 5.80 0.00 0.00 3.36 3.19 2.13 2.20 17.99 5.87 19 I1_AR6 ActiveIntronRegion 0 8.47 19.73 10.05 27.39 30.24 3.67 15.36 13.65 44.83 23.86 0.00 0.00 0.00 0.00 4.35 0.00 0.00 4.25 1.91 3.83 2.20 20.63 5.87 20 I1_AR7 ActiveIntronRegion 0 9.00 24.91 9.80 27.77 33.11 5.50 9.76 12.32 51.10 15.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.08 0.00 2.13 1.38 24.48 3.30 21 I1_SR1 SilentIntronRegion 0 3.58 18.45 7.61 18.20 25.68 9.92 4.99 16.33 35.17 17.11 0.00 0.00 0.00 0.00 0.00 0.00 0.82 3.66 0.00 6.61 0.55 21.04 2.42 22 I1_AR8 ActiveIntronRegion 0 0.00 6.10 5.05 8.09 15.72 1.83 4.47 16.53 20.77 9.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 10.64 0.41 16.67 2.94 23 I1_AR9 ActiveIntronRegion 0 4.56 23.20 5.75 32.17 26.81 6.10 5.72 13.35 46.81 16.27 0.00 1.10 0.00 0.00 0.77 0.57 0.00 6.82 1.62 8.11 2.21 20.81 3.08 24 I1_SR2 SilentIntronRegion 0 10.36 46.00 11.32 37.36 13.93 3.67 5.98 17.05 52.77 10.40 0.00 8.66 0.00 0.00 2.70 0.00 0.00 6.88 5.93 8.44 1.44 9.70 5.37 25 I1_AR10 ActiveIntronRegion 0 1.47 20.20 4.56 29.60 23.95 6.53 4.92 10.33 37.91 9.23 0.00 1.50 0.00 0.33 0.80 0.00 0.00 8.98 6.34 6.27 3.85 8.96 6.69 26 I1_SR3 SilentIntronRegion 0 0.62 8.85 3.73 9.84 9.00 4.63 1.05 4.76 29.86 3.18 0.00 0.59 0.00 0.13 0.00 0.00 0.00 7.88 3.40 5.34 1.43 0.61 0.60 27 I1_AR11 ActiveIntronRegion 0 5.29 12.22 4.54 6.50 5.78 55.72 4.90 10.29 19.59 6.38 0.00 0.00 0.00 0.67 0.00 0.00 0.00 15.99 2.87 6.11 29.88 13.02 9.47 28 Ix Intron 0 1.88 13.64 7.49 8.86 10.28 7.25 12.30 13.76 21.30 17.50 0.87 3.57 0.21 2.23 0.96 2.77 1.96 35.35 8.49 9.38 24.07 13.91 13.51 29 Ix_AR2 ActiveIntronRegion 0 0.22 12.66 1.90 5.07 5.01 8.33 11.80 11.04 9.54 9.05 0.34 0.28 0.00 0.50 0.31 2.39 0.26 47.84 9.89 4.40 26.19 9.48 8.49 30 Ix_AR3 ActiveIntronRegion 0 1.02 11.06 5.01 6.32 7.29 5.49 9.91 11.52 14.01 9.98 0.07 0.94 0.15 0.71 0.12 0.91 0.38 48.28 8.90 8.77 38.94 24.46 26.52 31 Ix_SR3 SilentIntronRegion 0 1.69 13.82 2.20 6.13 12.62 5.02 20.82 10.22 12.15 8.80 0.23 2.44 0.19 0.27 0.00 0.59 0.00 7.25 3.00 5.16 0.95 2.65 2.06 32 Ix_AR4 ActiveIntronRegion 0 3.26 23.14 4.34 16.42 16.64 7.59 16.70 25.53 58.36 20.35 1.49 8.43 0.83 5.80 1.56 7.67 6.99 87.07 16.24 20.72 54.07 24.45 25.55 33 Ix_SR4 SilentIntronRegion 0 0.77 7.45 3.09 5.23 9.74 5.22 16.49 13.82 14.21 11.94 1.08 11.48 0.00 2.07 0.85 2.36 2.71 12.31 2.83 9.84 2.26 5.11 3.59 34 Ix_AR5 ActiveIntronRegion 0 1.84 11.66 3.17 6.04 6.86 5.70 9.38 11.31 14.90 12.95 0.83 3.30 0.30 3.68 0.64 3.67 3.09 65.52 6.51 12.33 15.45 23.52 17.67 35 Ix_AR8 ActiveIntronRegion 0 1.50 11.16 2.61 7.10 9.22 6.39 11.32 13.62 25.72 22.04 2.07 5.07 0.15 6.23 1.49 6.28 4.01 66.66 6.84 15.36 37.37 9.53 15.80 36 Ix_SR7 SilentIntronRegion 0 3.74 31.48 2.63 15.92 17.16 6.37 25.36 17.10 27.31 23.37 1.33 7.42 0.21 4.17 1.83 3.72 2.06 16.43 5.40 12.63 5.34 9.42 8.04 37 Ix_AR9 ActiveIntronRegion 0 3.69 20.54 7.03 14.13 15.62 26.64 20.38 25.51 39.53 41.86 1.80 6.43 0.30 5.63 2.52 7.47 4.97 61.82 18.31 17.73 59.47 33.76 36.14 38 Ix_SR8 SilentIntronRegion 0 2.96 15.79 6.23 13.00 20.53 10.49 18.21 14.75 15.47 19.54 1.50 2.45 0.19 3.85 1.96 2.45 1.49 10.38 6.14 5.91 2.82 16.22 7.56 39 Ix_AR10 ActiveIntronRegion 0 5.98 34.61 13.44 23.34 32.79 9.49 18.88 32.53 37.83 43.60 0.89 7.12 0.00 1.44 2.16 2.43 2.87 9.25 3.12 7.86 1.30 13.24 3.69 40 Ix_SR9 SilentIntronRegion 0 1.50 17.40 2.53 13.65 15.45 3.86 12.80 19.56 27.88 20.43 0.26 1.44 0.00 0.45 0.35 0.69 0.88 7.91 2.23 5.29 1.13 2.81 3.06 41 Ix_AR11 ActiveIntronRegion 0 3.65 13.26 53.70 11.53 8.81 10.55 7.95 18.04 30.14 28.23 0.24 1.25 0.30 1.33 0.52 1.65 1.05 51.21 28.65 12.76 36.93 10.84 16.44 42 Ix_AR12 ActiveIntronRegion 0 1.45 9.68 5.62 5.29 5.39 4.69 6.39 7.24 9.70 15.74 2.07 2.21 0.00 0.47 1.82 0.73 0.34 20.49 5.88 4.64 43.97 23.81 19.62 43 Ix Intron 0 1.63 10.83 3.56 6.34 7.89 7.30 14.03 11.58 9.76 15.63 1.03 3.77 3.54 1.42 3.62 0.40 0.44 50.96 8.19 5.09 40.14 29.04 24.32 44 Ix_AR3 ActiveIntronRegion 0 2.04 33.72 3.32 3.97 7.96 9.58 4.20 6.12 12.17 23.28 3.29 5.98 7.88 3.92 8.83 0.17 0.19 212.12 25.57 3.27 122.69 64.81 39.43 45 Ix_AR4 ActiveIntronRegion 0 2.02 7.85 5.11 12.69 7.98 6.85 29.16 9.88 12.14 17.08 0.73 2.84 2.42 1.51 3.17 0.70 0.52 39.56 6.95 14.38 43.25 23.93 32.74 46 Ix_AR5 ActiveIntronRegion 0 2.88 5.33 5.81 7.35 16.31 19.95 28.74 36.70 14.31 30.87 0.98 2.86 2.68 0.81 3.83 0.94 1.22 26.77 9.28 4.94 50.44 66.80 52.47 47 Ix_AR6 ActiveIntronRegion 0 0.68 4.92 1.98 1.75 0.73 27.19 7.57 5.95 7.64 5.85 0.52 0.97 0.00 0.80 1.11 0.00 0.90 6.07 5.49 3.58 127.09 26.18 95.27 48 Ix_AR6 ActiveIntronRegion 0 0.00 1.55 1.43 0.00 2.04 18.83 4.03 3.95 4.22 3.75 0.00 0.00 0.56 1.02 0.00 0.00 0.00 6.18 2.42 0.00 29.54 14.15 39.62 49 Ix_AR1 ActiveIntronRegion 0 0.43 1.77 0.51 3.37 3.80 2.61 8.39 6.12 2.58 4.21 0.00 6.39 0.00 1.00 4.14 1.85 0.41 4.58 0.00 1.93 2.21 18.73 7.61 50 Ix_AR2 ActiveIntronRegion 0 1.10 5.37 1.59 3.86 2.32 2.22 9.04 3.33 10.04 6.27 0.00 1.93 0.82 0.97 0.90 1.49 1.20 16.83 1.73 2.90 8.64 1.92 6.51 51 Ix_AR3 ActiveIntronRegion 0 1.47 1.80 0.14 0.00 0.00 0.00 0.36 1.93 3.14 1.99 0.00 0.00 0.00 0.00 2.45 0.00 0.00 1.42 0.00 2.13 30.94 10.50 18.41 52 Ix_AR2 ActiveIntronRegion 0 5.34 12.61 5.80 9.34 6.01 2.12 15.93 10.28 19.70 6.98 0.00 0.34 0.64 0.29 0.53 1.83 0.00 28.70 1.97 5.28 16.25 2.91 19.67 53 Ix_SR2 SilentIntronRegion 0 1.60 4.66 5.71 11.33 3.05 1.07 9.78 13.09 19.19 8.78 0.00 0.67 0.00 0.54 1.69 0.44 0.10 28.39 3.09 5.06 10.40 3.16 9.30 54 Ix_AR3 ActiveIntronRegion 0 0.32 4.86 4.93 4.26 2.52 2.12 4.97 4.49 15.42 6.69 0.47 0.08 0.31 0.26 1.22 0.00 0.47 21.73 2.22 4.59 9.97 2.05 7.27 55 Ix_SR3 SilentIntronRegion 0 2.13 16.56 10.39 8.41 7.41 2.28 14.11 6.25 22.51 7.22 0.00 4.30 3.10 0.30 0.00 0.00 0.00 16.13 3.52 4.26 8.48 0.72 9.55 56 Ix_SR5 SilentIntronRegion 0 2.39 8.63 5.03 7.69 6.57 2.68 8.73 11.07 19.92 10.62 0.00 0.58 0.00 0.04 0.17 0.44 0.27 11.15 1.96 4.07 4.99 3.45 8.91 57 Ix_AR6 ActiveIntronRegion 0 0.00 7.08 0.63 4.48 10.19 1.83 4.31 5.02 13.87 8.51 0.00 0.00 0.00 0.00 0.00 4.51 0.00 21.58 3.19 2.88 16.21 3.83 34.58 58 Ix_AR7 ActiveIntronRegion 0 2.27 6.61 1.74 3.08 0.99 0.98 2.83 2.87 7.12 4.20 0.00 0.00 0.00 0.00 0.00 0.66 0.00 11.94 3.69 9.99 24.33 10.99 23.55 59 Ix Intron 0 4.05 23.79 6.14 12.58 5.52 2.80 10.82 7.68 20.12 8.89 0.00 1.36 2.70 0.00 1.44 0.68 0.00 23.68 3.90 15.29 12.29 7.01 18.20 60 Ix_AR1 ActiveIntronRegion 0 2.89 15.39 3.40 13.08 3.61 1.92 10.10 8.02 20.99 7.49 0.00 1.43 0.96 0.00 1.81 1.83 0.00 42.51 5.45 15.30 19.51 8.09 29.09 61 Ix_SR1 SilentIntronRegion 0 4.74 28.83 7.79 12.31 6.67 3.34 11.28 7.50 19.66 9.73 0.00 1.33 3.74 0.00 1.21 0.00 0.00 12.57 2.99 15.33 8.04 6.39 11.78 62 Ix Intron 0 4.05 18.42 8.53 11.04 8.51 6.35 9.27 6.58 20.19 5.99 0.08 0.53 1.03 0.24 0.70 0.42 0.00 22.42 5.90 13.36 10.73 4.82 12.83 63 Ix_SR1 SilentIntronRegion 0 4.17 17.84 8.49 11.69 8.50 4.83 9.32 6.64 20.33 5.67 0.08 0.57 1.11 0.26 0.76 0.45 0.00 22.16 6.14 10.73 10.38 5.15 12.74 64 Ix_AR1 ActiveIntronRegion 0 2.45 26.30 9.13 2.35 8.71 26.78 8.79 5.97 18.53 10.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26.14 2.77 48.73 15.53 0.51 14.08 65 Ix Intron 0 1.56 6.93 3.48 5.56 7.06 7.17 6.28 7.23 23.18 8.28 0.13 0.60 0.60 0.31 0.63 0.79 0.22 44.98 6.28 19.47 20.60 8.70 22.46 66 Ix_AR1 ActiveIntronRegion 0 1.89 4.13 1.67 2.07 6.73 7.00 4.38 5.46 23.52 5.82 0.71 0.00 0.00 0.40 1.29 0.00 0.00 41.60 7.21 16.45 17.46 3.80 23.37 67 Ix_AR2 ActiveIntronRegion 0 0.00 8.39 2.45 4.43 10.70 11.00 8.94 5.19 21.15 8.46 1.93 0.00 0.00 0.00 0.00 0.00 0.00 40.65 12.74 24.20 17.63 4.17 14.68 68 Ix_SR1 SilentIntronRegion 0 1.56 7.94 4.07 6.41 7.02 7.04 7.01 7.62 24.23 9.19 0.05 0.77 0.61 0.23 0.62 1.03 0.29 48.89 6.66 20.92 18.82 7.69 18.79 69 Ix_SR3 SilentIntronRegion 0 2.99 18.37 5.81 9.80 9.45 3.64 8.31 12.98 23.99 13.87 0.00 0.00 0.92 0.00 0.79 0.95 0.00 51.58 7.42 12.91 25.38 11.63 20.87 70 ER2a ExonRegion 0 0.00 3.17 0.75 2.84 0.00 7.24 0.90 2.87 6.72 0.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.25 6.10 1.08 12.29 4.45 1.79 71 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 72 ER3a ExonRegion 0 0.00 0.96 0.00 0.00 0.00 0.21 0.00 0.23 0.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 2.76 1.63 3.29 5.50 3.37 73 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 74 Ix_AR4 ActiveIntronRegion 0 6.35 8.13 7.35 8.18 13.38 20.17 8.61 8.64 13.79 8.03 0.00 0.00 0.00 0.00 0.00 2.97 0.00 10.16 0.00 5.32 19.83 7.99 3.92 75 ER4a ExonRegion 0 0.05 0.26 0.00 0.00 0.00 0.41 0.03 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.46 0.12 0.09 0.14 0.18 0.00