Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C5orf4 Gene 0 58.40 7.36 17.48 32.10 36.42 15.76 10.40 27.14 176.22 44.83 1.99 3.68 3.05 2.14 4.78 8.55 7.45 8.80 16.32 16.15 123.07 105.52 54.98 2 326080 Transcript 0 23.62 0.76 9.84 17.92 21.49 9.10 4.29 17.63 133.49 32.49 0.00 1.58 0.00 0.00 0.00 0.81 1.15 3.74 6.34 7.46 96.18 101.32 61.47 3 423554 Transcript 0 10.52 3.37 6.73 5.38 8.01 2.53 2.74 9.68 17.75 10.75 2.78 2.04 3.09 4.14 5.21 6.87 4.65 6.92 3.48 5.60 11.17 10.61 10.33 4 IG37_AR3 ActiveIntergenicRegion 0 1.16 2.42 1.84 1.08 1.96 5.03 1.94 3.30 2.52 8.30 9.89 0.72 0.71 10.10 3.76 8.69 2.72 20.48 6.78 14.90 10.67 3.05 11.54 5 ER1a ExonRegion 0 8.18 0.14 1.12 0.30 2.79 2.45 3.24 0.23 1.32 5.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.68 0.71 2.74 5.34 9.54 12.92 6 E1_Ab KnownBoundary 0 28.30 0.00 1.83 1.33 8.23 8.52 7.60 3.53 9.40 10.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.87 3.76 2.88 12.60 25.17 39.35 7 ER1b ExonRegion 0 31.97 2.37 1.88 7.42 25.04 11.75 6.88 9.78 65.03 25.71 0.00 0.00 0.00 0.00 0.83 2.41 0.00 2.38 7.48 5.98 88.48 84.75 50.20 8 E1a_E2a KnownJunction 0 3.26 0.00 0.00 3.03 0.00 0.00 0.00 2.55 39.87 17.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36.45 19.29 20.15 9 I1_AR4 ActiveIntronRegion 0 11.83 3.26 10.51 16.65 23.29 2.53 4.75 10.34 23.49 17.40 0.97 2.12 5.32 2.14 2.60 5.98 4.39 3.25 3.93 5.86 6.03 5.41 4.93 10 I1_SR4 SilentIntronRegion 0 7.00 3.38 3.96 11.45 20.13 1.19 4.09 9.23 24.41 15.05 1.02 1.66 1.75 1.40 7.49 6.81 4.70 4.58 5.48 4.39 9.88 5.12 11.33 11 E2_Aa NovelBoundary 0 20.97 6.71 7.72 12.55 25.55 0.00 29.81 21.11 20.78 31.32 5.37 25.21 6.82 4.71 22.99 0.00 9.54 4.19 0.00 21.22 11.31 6.06 11.44 12 ER2a ExonRegion 0 8.91 0.13 1.28 9.40 11.26 0.92 1.24 4.93 80.69 25.78 0.00 0.00 0.00 0.07 0.30 0.00 0.00 1.92 1.86 3.72 117.71 48.40 19.70 13 E2_Da NovelBoundary 0 21.49 0.00 13.16 14.92 27.16 0.00 0.00 14.70 25.43 17.14 0.00 0.00 0.00 0.00 0.00 0.00 3.65 2.28 0.00 2.49 8.65 5.63 7.60 14 E2a_E3a KnownJunction 0 0.00 0.00 1.57 16.48 25.38 2.90 1.77 10.97 145.11 33.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.47 5.88 185.15 91.05 29.11 15 I2_AR2 ActiveIntronRegion 0 14.27 4.59 9.33 11.67 7.24 2.65 3.28 11.14 26.15 14.35 0.86 1.07 0.58 1.35 5.55 4.02 0.99 5.27 2.88 5.35 11.73 3.76 7.47 16 E3_Aa NovelBoundary 0 16.08 0.00 7.92 10.79 10.95 0.00 4.24 4.11 29.86 17.97 0.00 0.00 6.98 3.00 0.00 0.00 0.00 8.25 8.56 2.62 0.00 6.00 4.35 17 ER3a ExonRegion 0 13.02 4.71 7.61 23.18 17.60 3.93 4.94 20.08 198.37 44.63 1.07 1.98 0.00 0.87 8.33 5.49 1.90 5.40 19.42 20.00 151.62 185.32 68.40 18 E3_Da NovelBoundary 0 3.78 0.00 9.76 3.40 10.95 0.00 3.71 12.24 12.82 11.90 0.00 0.00 0.00 2.12 0.00 3.76 13.65 8.62 0.00 5.69 2.41 0.00 11.61 19 E3a_E4a KnownJunction 0 10.59 2.57 15.91 32.36 40.58 7.21 5.21 35.12 205.29 48.19 0.00 0.00 0.00 0.00 0.00 4.10 0.00 2.57 21.18 8.18 135.91 123.69 71.45 20 E4_Aa NovelBoundary 0 14.52 9.08 3.96 6.19 8.23 5.68 2.25 16.06 12.47 21.14 0.00 6.30 6.82 2.41 14.71 3.85 3.83 9.16 0.00 12.02 0.00 4.90 0.00 21 ER4a ExonRegion 0 17.56 14.51 10.58 30.19 34.32 14.00 11.06 21.14 202.99 53.75 0.00 0.00 3.79 1.45 6.47 2.83 3.65 4.57 9.71 9.21 170.24 141.92 58.28 22 E4_Da NovelBoundary 0 10.45 3.09 3.46 15.38 15.79 0.00 11.75 10.68 34.87 21.38 0.00 0.00 0.00 2.41 15.20 0.00 4.02 1.95 0.00 11.38 5.50 11.88 20.66 23 E4a_E5a KnownJunction 0 48.23 2.96 14.13 32.76 38.71 17.32 6.76 17.70 230.21 50.47 0.00 0.00 0.00 0.00 0.00 3.67 4.30 6.22 22.02 14.25 175.20 175.43 57.19 24 E4a_E6a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.77 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.72 28.72 0.00 25 I4_AR1 ActiveIntronRegion 0 11.92 7.31 6.52 9.83 12.31 1.50 6.48 6.86 17.94 14.93 1.72 1.80 4.95 2.62 7.70 6.55 7.31 4.03 6.60 9.36 18.07 10.77 10.16 26 ER5a ExonRegion 0 34.32 3.80 15.18 32.80 27.35 12.30 6.06 23.60 248.64 61.43 0.02 3.30 3.23 2.78 1.93 8.60 6.66 4.85 11.51 13.81 184.33 121.01 64.70 27 E5_Da NovelBoundary 0 9.93 3.35 4.55 10.29 12.73 2.61 9.58 10.72 43.55 17.70 0.00 0.00 6.49 0.00 4.45 4.36 9.07 5.72 12.33 11.89 17.42 10.72 15.79 28 E5a_E6a KnownJunction 0 76.75 2.70 12.86 35.96 34.04 9.60 2.25 21.60 297.10 61.97 0.00 0.00 0.00 2.94 0.00 3.50 0.00 8.87 18.64 0.00 208.50 215.36 112.51 29 I5 Intron 0 14.00 9.32 13.50 10.41 12.15 2.46 6.84 10.80 25.31 17.77 3.13 2.21 4.44 3.77 9.26 10.15 7.64 9.22 7.51 10.86 21.34 12.52 12.25 30 I5_AR1 ActiveIntronRegion 0 13.33 6.55 11.94 10.35 13.38 3.00 5.03 12.38 30.78 18.81 2.32 2.04 2.90 3.38 5.24 7.29 7.30 8.04 4.90 8.19 21.50 11.62 12.99 31 I5_AR2 ActiveIntronRegion 0 16.87 13.45 18.11 12.34 13.01 2.50 9.98 11.27 23.27 20.03 4.60 2.72 6.87 4.75 14.61 15.02 8.99 12.59 11.31 15.52 23.88 15.60 13.28 32 E6_Aa NovelBoundary 0 15.11 13.09 16.06 10.79 4.24 7.33 1.63 7.48 32.84 24.52 2.63 0.00 0.00 4.94 4.45 12.73 4.21 5.76 17.13 14.38 23.23 6.25 7.94 33 ER6a ExonRegion 0 46.13 9.89 21.59 37.62 23.19 18.85 14.46 33.80 260.61 67.99 4.60 1.16 2.35 2.84 7.82 9.26 17.48 10.32 27.83 19.53 224.97 172.36 97.79 34 E6_Da KnownBoundary 0 7.19 0.00 7.18 8.29 15.87 4.54 2.12 13.84 25.09 11.82 10.11 6.30 0.00 10.12 10.75 11.88 7.95 17.12 4.80 12.21 8.40 6.12 7.85 35 E6a_E7a KnownJunction 0 61.34 2.89 32.88 51.77 61.12 11.75 5.87 36.23 333.53 77.93 0.00 0.00 0.00 0.00 0.00 3.25 0.00 9.08 24.66 12.46 222.52 283.08 162.87 36 ER6b ExonRegion 0 9.11 2.55 11.28 6.43 6.67 4.11 1.16 14.66 19.40 14.98 5.46 1.59 6.89 8.92 10.58 12.19 5.22 9.57 1.09 4.71 14.34 7.12 10.11 37 E6_Db NovelBoundary 0 14.08 6.05 9.37 1.73 12.99 2.50 23.94 4.07 1.19 8.57 5.00 6.30 0.00 4.89 4.45 16.06 26.37 10.40 4.80 23.39 2.47 0.00 0.00 38 E6b_E7a KnownJunction 0 0.00 0.00 0.00 3.96 8.40 0.00 0.00 6.20 14.00 5.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.73 0.00 0.00 8.03 10.29 12.04 39 E7_Aa NovelBoundary 0 10.45 9.01 7.16 5.53 7.47 0.00 4.06 2.34 11.69 13.38 2.68 0.00 0.00 2.47 5.69 17.94 3.55 8.08 4.80 15.47 3.09 7.10 0.00 40 ER7a ExonRegion 0 38.78 6.02 23.65 48.18 36.07 24.84 6.11 38.12 307.31 73.41 3.67 1.67 1.95 1.78 10.84 9.81 5.79 7.69 31.94 21.76 227.50 181.72 102.92 41 E7_Da NovelBoundary 0 5.70 10.98 9.25 10.82 0.00 0.00 2.25 12.40 20.17 21.54 2.37 5.70 0.00 7.42 8.90 14.18 3.93 14.96 12.99 8.56 2.35 5.20 0.00 42 E7a_E8a KnownJunction 0 19.86 0.00 11.12 19.24 7.56 7.38 1.94 41.73 237.99 56.17 0.00 0.00 6.17 0.00 0.00 0.00 7.85 3.86 0.00 10.74 159.32 112.30 53.86 43 E8_Aa NovelBoundary 0 13.34 3.35 13.04 9.52 0.00 5.11 4.15 9.16 26.36 19.77 2.68 0.00 0.00 4.53 14.22 19.40 7.67 11.28 12.42 5.94 14.46 3.06 8.71 44 ER8a ExonRegion 0 43.79 5.81 23.88 38.19 34.64 17.23 13.08 39.07 251.42 62.34 1.22 3.86 5.45 4.22 8.03 10.04 10.16 15.86 11.44 25.43 222.28 143.01 79.27 45 E8_Da KnownBoundary 0 9.63 5.92 9.76 1.76 10.95 0.00 4.15 6.65 17.48 11.63 0.00 12.60 6.82 3.00 9.89 26.15 8.60 8.00 4.05 22.88 10.56 11.14 13.06 46 E8a_E8b KnownJunction 0 24.97 0.00 5.38 19.61 19.35 22.20 8.04 33.19 199.13 45.96 0.00 6.30 0.00 0.00 0.00 0.00 4.58 4.19 0.00 14.64 156.85 112.67 70.08 47 ER8b ExonRegion 0 22.44 7.57 8.92 5.73 8.95 3.47 7.06 8.17 19.84 11.65 2.87 4.54 2.37 3.48 5.06 8.43 8.71 7.48 9.37 12.07 11.13 14.43 8.84 48 E8_Ab KnownBoundary 0 12.74 9.41 6.89 2.66 8.49 0.00 2.08 1.81 31.89 8.46 0.00 0.00 14.12 0.00 5.19 8.20 0.00 5.60 4.14 9.33 21.87 11.33 4.01 49 ER8c ExonRegion 0 88.09 8.03 22.57 45.02 53.78 21.98 12.79 36.05 229.28 54.97 1.70 4.48 3.53 1.40 3.92 9.43 7.19 9.98 19.85 18.40 144.96 129.95 66.84 50 ER8d ExonRegion 0 0.00 0.00 0.00 0.00 2.68 0.00 0.00 0.86 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 51 IG36 Intergenic 0 6.17 4.74 3.09 3.31 7.02 1.39 6.71 4.95 17.92 7.27 1.35 7.15 3.12 1.62 2.92 7.80 12.31 8.51 6.31 11.78 3.85 6.07 8.39 52 IG36_AR3 ActiveIntergenicRegion 0 5.65 5.46 2.78 3.15 6.91 1.42 7.42 4.90 17.73 6.83 1.02 5.25 1.31 1.36 3.84 7.71 12.33 9.08 5.44 12.68 2.49 7.32 7.34 53 IG36_AR2 ActiveIntergenicRegion 0 5.77 3.72 4.10 5.24 6.18 1.10 5.52 5.19 19.35 9.60 2.12 10.39 3.40 1.61 1.24 12.12 14.63 8.44 8.38 12.14 6.64 4.71 10.43 54 IG36_AR1 ActiveIntergenicRegion 0 10.40 3.56 3.83 1.64 7.29 0.96 6.49 5.79 20.50 7.04 2.66 15.32 13.01 3.35 1.31 2.15 8.99 6.65 9.76 8.09 7.96 2.73 14.54