Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AFAP1L1 Gene 0 48.40 4.12 68.76 32.17 25.86 21.33 24.31 38.06 34.30 31.66 0.21 0.85 0.51 0.53 0.48 0.32 0.98 3.87 4.10 2.54 6.19 34.81 23.76 2 455574 Transcript 0 5.94 0.80 3.75 2.41 8.14 0.82 2.19 2.53 4.58 4.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.51 0.42 0.00 0.00 0.15 3.89 3 296721 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 431073 Transcript 0 0.00 0.00 1.33 1.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 394338 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 ER1a ExonRegion 0 1.20 0.00 0.88 0.00 1.52 6.23 1.50 2.46 1.78 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.99 0.00 7 E1a_E3a KnownJunction 0 0.00 0.00 5.59 0.00 0.00 2.73 1.81 6.33 3.33 2.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.88 0.00 8 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 ER3a ExonRegion 0 4.82 0.00 11.86 2.59 2.12 1.45 1.14 10.32 9.07 9.76 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.24 2.54 0.00 6.27 15.49 8.31 10 E3a_E4a KnownJunction 0 15.48 0.00 19.69 6.39 0.00 0.00 1.77 27.72 24.91 23.32 0.00 0.00 0.00 0.00 0.00 0.00 7.39 1.70 7.06 0.00 5.75 8.88 4.18 11 ER4a ExonRegion 0 2.19 1.04 25.46 5.14 5.73 2.64 4.48 21.03 25.70 20.08 0.00 0.00 0.00 0.00 0.00 0.00 3.34 1.76 6.07 0.00 13.43 17.98 13.95 12 E4a_E5a KnownJunction 0 6.37 2.50 29.51 8.16 16.04 10.73 8.08 29.74 21.35 17.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.16 4.14 0.00 5.75 27.49 20.83 13 ER5a ExonRegion 0 8.29 0.81 35.14 11.17 12.40 13.55 6.75 30.74 26.52 22.51 0.00 0.00 0.00 0.00 0.00 0.00 3.44 2.21 7.87 0.00 8.23 31.25 19.03 14 E5a_E6a KnownJunction 0 0.00 3.29 52.69 12.45 8.23 4.77 2.21 23.82 30.73 16.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.87 0.00 0.00 8.83 23.57 16.90 15 ER6a ExonRegion 0 10.10 2.28 35.30 10.15 11.98 4.51 4.24 23.68 27.99 16.15 0.00 0.00 0.00 0.42 0.00 0.00 0.00 1.70 5.73 0.00 4.77 24.96 14.95 16 E6a_E7a KnownJunction 0 9.78 0.00 42.78 8.46 0.00 17.15 8.04 27.07 25.78 13.70 0.00 0.00 0.00 2.47 0.00 0.00 0.00 2.57 4.80 0.00 8.71 21.92 3.50 17 ER7a ExonRegion 0 10.52 0.86 47.46 12.17 9.76 14.99 6.12 23.05 26.32 22.27 0.00 0.00 0.00 0.77 0.00 0.00 0.00 2.00 3.70 0.00 5.56 28.60 28.27 18 E7a_E8a KnownJunction 0 14.22 0.00 34.86 22.67 27.84 7.33 14.22 15.20 27.11 20.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.70 0.00 0.00 8.71 13.84 35.60 19 E8_Aa NovelBoundary 0 9.63 3.35 6.68 3.96 20.71 0.00 6.32 2.34 6.28 1.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.81 0.00 0.00 0.00 2.51 0.00 20 ER8a ExonRegion 0 9.94 1.55 66.20 19.95 17.03 8.85 12.27 27.66 27.42 29.98 0.00 0.00 0.00 0.62 0.00 0.00 0.79 2.52 0.00 1.02 8.33 24.56 28.42 21 E8a_E9a KnownJunction 0 20.45 0.00 69.99 22.71 16.98 13.80 12.41 25.01 33.22 29.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.25 14.63 36.45 22 E9_Aa NovelBoundary 0 0.00 6.18 1.54 0.00 20.37 0.00 0.00 0.00 4.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 ER9a ExonRegion 0 15.33 1.93 73.00 16.43 16.84 12.68 7.71 26.94 26.84 31.73 0.00 0.00 0.00 0.00 0.00 0.00 1.87 2.67 0.00 2.67 9.70 21.19 19.24 24 E9a_E10a KnownJunction 0 28.15 3.09 53.13 14.82 27.50 29.41 14.49 29.98 18.98 32.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.52 0.00 3.26 7.23 29.51 34.40 25 ER10a ExonRegion 0 15.59 0.85 46.95 20.05 14.30 21.08 8.44 27.26 20.93 38.13 0.00 0.00 0.00 0.00 0.00 0.00 1.81 3.36 2.98 1.83 9.36 24.44 23.05 26 E10_Da KnownBoundary 0 7.26 0.00 10.82 5.16 33.62 8.12 4.50 6.65 9.87 3.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.28 4.33 0.00 0.00 2.39 0.00 27 E10a_E11a KnownJunction 0 13.56 2.83 44.76 24.14 15.62 15.45 15.68 21.44 15.51 36.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.45 0.00 0.00 13.10 37.96 15.11 28 ER10b ExonRegion 0 5.94 0.80 3.75 2.41 8.14 0.82 2.19 2.53 4.58 4.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.51 0.42 0.00 0.00 0.15 3.89 29 E11_Aa NovelBoundary 0 14.15 3.16 3.43 1.70 19.27 4.71 2.25 2.55 11.40 11.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.06 0.00 30 ER11a ExonRegion 0 19.21 1.23 48.79 26.23 8.63 20.27 14.42 30.21 22.65 36.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.26 0.17 1.11 7.24 23.07 21.31 31 E11a_E12a KnownJunction 0 12.97 0.00 54.91 27.90 10.27 17.94 12.59 21.69 30.12 46.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 0.00 0.00 31.90 19.55 32 ER12a ExonRegion 0 22.87 1.62 49.47 26.57 15.25 21.60 10.60 27.40 31.61 35.03 0.00 0.00 0.00 0.00 0.00 0.99 0.99 4.82 4.16 0.74 8.27 33.08 33.30 33 E12a_E13a KnownJunction 0 29.19 3.09 49.61 18.85 15.37 23.45 10.51 35.65 21.67 43.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.73 0.00 0.00 17.79 15.37 15.62 34 ER13a ExonRegion 0 24.73 2.13 55.03 25.10 8.68 22.01 14.61 22.45 29.86 33.53 0.00 0.00 0.00 0.00 0.00 0.71 0.87 5.22 1.88 0.51 6.96 27.84 23.06 35 E13a_E14a KnownJunction 0 34.60 6.25 53.25 31.23 10.70 34.01 18.86 27.48 36.72 25.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.44 4.80 0.00 16.93 34.60 21.08 36 ER14a ExonRegion 0 16.51 3.65 69.76 26.79 14.64 22.50 17.29 31.33 34.55 25.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 6.57 2.84 2.23 8.66 35.99 28.70 37 E14a_E15a KnownJunction 0 36.38 0.00 90.39 46.88 26.15 31.35 24.60 46.25 52.26 45.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 0.00 19.46 44.88 48.57 38 ER15a ExonRegion 0 21.57 1.42 62.75 39.56 20.27 26.95 16.36 36.25 34.70 37.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 2.23 0.00 10.90 37.85 18.99 39 E15a_E16a KnownJunction 0 29.41 0.00 72.06 36.59 7.98 25.78 13.51 37.58 25.03 33.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.58 0.00 0.00 3.03 33.07 11.27 40 ER16a ExonRegion 0 32.60 1.58 62.99 33.55 9.75 26.39 12.91 38.01 27.35 34.35 0.00 0.00 0.00 0.61 0.00 0.00 1.50 3.86 1.45 0.28 6.95 33.93 29.24 41 E16a_E17a KnownJunction 0 48.90 6.18 47.69 34.16 4.07 51.67 24.60 40.70 21.41 34.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 3.03 23.76 31.33 42 ER17a ExonRegion 0 47.91 2.95 63.62 37.75 26.14 25.01 24.30 33.96 35.89 34.51 0.00 0.00 0.00 0.10 0.00 0.00 1.02 8.54 1.49 0.92 6.58 29.76 23.94 43 E17a_E18a KnownJunction 0 40.30 3.35 74.51 44.92 24.28 22.43 16.56 28.05 36.81 34.03 0.00 0.00 0.00 2.41 0.00 0.00 0.00 12.19 4.42 3.00 10.87 37.11 26.72 44 ER18a ExonRegion 0 34.56 2.31 69.98 38.11 19.27 20.28 20.33 32.78 35.40 30.42 0.00 0.00 0.13 0.33 0.00 0.00 0.94 10.49 3.47 0.19 8.51 30.80 18.42 45 E18a_E19a KnownJunction 0 48.23 9.74 84.27 46.08 27.59 43.21 39.66 49.58 42.27 27.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.50 7.44 0.00 9.02 51.37 39.78 46 E18a_E20a KnownJunction 0 0.00 0.00 1.33 1.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 47 ER19a ExonRegion 0 58.79 2.19 84.76 33.06 27.15 30.82 27.49 40.63 38.73 38.91 0.00 0.00 1.35 0.48 0.00 0.00 2.61 3.15 7.53 0.84 5.33 35.19 45.62 48 E19a_E20a KnownJunction 0 81.72 0.00 74.42 23.81 22.24 16.47 31.89 51.75 35.30 50.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.49 8.38 0.00 0.00 37.41 30.13 49 ER20a ExonRegion 0 87.10 7.50 92.98 47.03 42.56 28.38 41.32 54.67 44.97 37.72 0.49 2.02 1.10 0.97 1.14 0.59 0.94 3.74 6.12 5.01 4.88 47.58 26.23 50 IG25 Intergenic 0 10.13 2.52 20.46 8.23 7.83 4.44 8.57 7.54 6.84 6.45 0.22 0.85 0.00 0.15 0.00 0.17 0.37 1.35 1.61 2.40 0.62 7.04 2.98 51 IG25_SR1 SilentIntergenicRegion 0 11.59 2.78 20.85 9.54 8.20 4.90 9.67 7.73 7.20 7.02 0.25 0.98 0.00 0.17 0.00 0.19 0.43 1.20 1.87 2.36 0.72 7.88 3.45 52 IG25_AR1 ActiveIntergenicRegion 0 0.88 0.85 18.32 0.00 5.59 1.53 1.66 6.46 4.62 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.30 0.00 2.67 0.00 1.74 0.00