Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 FAM53C Gene 0 79.60 136.28 140.22 97.10 124.74 144.15 66.78 119.35 139.02 121.90 176.46 105.76 49.95 163.94 113.00 253.42 144.29 246.07 125.72 124.70 133.72 155.40 138.06 2 434981 Transcript 0 2.82 1.56 1.82 2.23 2.83 2.07 0.42 1.22 2.10 2.22 0.52 0.38 0.99 1.91 0.60 1.28 0.71 5.00 2.59 0.92 0.48 0.22 0.18 3 239906 Transcript 1 80.70 60.79 6.72 15.32 44.72 66.61 33.86 19.19 33.89 41.27 114.60 10.09 3.17 31.56 37.03 162.91 83.06 125.30 100.91 103.98 66.36 41.11 81.96 4 IG41_AR7 ActiveIntergenicRegion 0 0.00 3.68 4.55 2.13 0.00 1.83 2.63 3.95 1.22 3.57 3.88 13.50 0.00 3.73 7.50 7.97 6.31 1.24 8.74 3.69 0.00 0.00 2.97 5 IG41_AR8 ActiveIntergenicRegion 0 0.00 0.86 1.93 0.00 22.11 7.34 2.37 3.18 0.00 1.09 2.24 3.65 0.25 9.66 0.00 6.57 0.00 9.92 2.18 1.79 0.00 0.00 0.00 6 IG41_SR8 SilentIntergenicRegion 0 0.00 2.62 2.14 0.00 13.38 1.28 3.01 4.77 0.00 1.30 8.87 10.95 2.98 5.32 0.66 6.39 6.30 9.13 2.41 2.45 0.00 0.00 0.13 7 ER1a ExonRegion 0 0.00 1.63 1.57 1.41 1.48 0.70 1.27 1.83 2.40 2.32 1.55 1.14 0.62 2.45 1.80 2.35 2.12 10.73 2.23 2.77 1.43 0.67 0.55 8 E1a_E3a KnownJunction 0 0.00 0.00 1.45 3.93 4.33 0.00 0.00 1.85 3.91 4.35 0.00 0.00 0.00 2.47 0.00 0.00 0.00 4.27 3.95 0.00 0.00 0.00 0.00 9 ER2a ExonRegion 0 10.48 8.18 2.17 3.57 8.12 11.13 5.28 4.25 9.13 7.60 23.46 2.47 0.16 8.26 6.45 26.41 18.94 32.60 17.06 18.06 14.04 9.47 12.74 10 E2_Da NovelBoundary 0 0.00 0.00 4.64 3.73 0.00 0.00 0.00 1.77 1.71 1.50 2.68 0.00 0.00 0.00 0.00 8.03 4.30 21.14 17.22 3.26 12.48 6.18 68.97 11 E2a_E3a KnownJunction 1 150.92 113.40 11.27 27.07 81.32 122.09 62.45 34.13 58.65 74.94 205.74 17.71 6.17 54.86 67.62 299.41 147.17 218.00 184.76 189.90 118.67 72.75 151.18 12 E2a_E4a NovelJunction 0 0.00 9.41 1.69 3.20 12.82 44.97 8.44 6.41 16.06 4.94 0.00 0.00 0.00 2.12 4.45 18.88 0.00 13.56 13.65 15.53 6.30 6.18 19.21 13 E2a_E5a NovelJunction 0 0.00 2.83 2.57 1.76 0.00 0.00 0.00 2.42 1.79 1.67 0.00 0.00 0.00 4.77 0.00 0.00 0.00 10.86 9.60 5.69 8.90 11.94 20.66 14 I2 Intron 0 3.64 12.98 8.58 5.13 8.51 10.39 5.86 11.24 14.65 7.60 9.01 17.17 6.78 11.15 4.01 11.04 10.56 13.56 11.07 19.12 10.79 11.89 37.65 15 I2_AR1 ActiveIntronRegion 0 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 0.24 0.45 0.00 0.00 2.35 2.22 6.70 0.00 1.97 0.27 0.00 0.00 1.73 27.93 16 I2_SR1 SilentIntronRegion 0 2.32 9.58 6.05 2.96 7.52 7.96 3.70 8.46 12.55 6.17 8.15 8.03 3.49 10.39 2.79 9.30 8.46 17.87 11.65 18.40 13.27 9.36 38.78 17 I2_AR2 ActiveIntronRegion 0 6.04 19.48 13.32 8.88 10.90 15.27 9.80 16.65 19.56 10.63 11.32 32.61 12.34 13.45 5.98 14.32 15.01 8.52 11.45 22.35 8.06 16.90 38.69 18 ER3a ExonRegion 0 27.62 34.70 56.17 57.37 33.82 53.62 26.65 81.48 104.15 104.29 191.43 140.71 65.25 102.91 77.09 226.68 150.41 267.39 123.07 154.44 162.22 123.63 144.39 19 E3_Da NovelBoundary 0 14.00 12.70 26.02 24.94 12.56 33.50 1.90 21.93 26.62 13.86 16.21 29.71 19.32 19.37 16.07 49.39 17.39 77.14 49.60 42.95 33.48 26.70 134.02 20 E3a_E4a KnownJunction 0 3.78 28.61 81.78 87.77 30.22 17.38 14.31 125.23 120.02 122.54 220.11 226.72 143.50 156.81 98.15 364.26 160.54 408.27 141.65 171.94 185.21 149.47 196.59 21 I3 Intron 0 6.01 16.28 20.98 14.95 16.24 13.49 9.23 15.29 26.85 12.58 9.23 16.84 8.98 13.82 9.70 23.79 13.21 35.00 22.62 27.47 17.65 19.09 49.29 22 I3_AR1 ActiveIntronRegion 0 5.58 16.87 21.76 16.49 16.79 15.81 9.87 14.54 27.83 12.57 9.01 16.59 9.86 14.24 9.20 24.04 11.70 37.25 21.62 29.42 17.79 19.32 52.40 23 I3_SR1 SilentIntronRegion 0 7.78 14.46 18.56 9.56 14.57 5.17 7.05 18.43 23.84 12.92 10.29 18.15 5.88 12.54 11.78 23.45 19.13 27.43 26.90 20.84 17.55 18.70 38.81 24 E4_Aa NovelBoundary 0 3.78 23.55 17.27 10.85 19.95 23.51 14.57 29.49 36.46 17.92 7.37 36.91 0.00 18.48 19.16 11.19 9.07 50.32 31.06 33.24 32.62 19.41 50.45 25 ER4a ExonRegion 0 5.95 22.40 71.26 64.34 50.47 43.19 16.55 115.27 139.36 142.51 268.01 192.44 94.37 229.98 101.24 302.18 219.45 415.04 192.88 151.65 193.70 192.08 137.87 26 E4_Da NovelBoundary 0 3.11 30.32 27.29 22.57 12.14 27.48 4.02 21.65 32.46 19.07 12.16 43.06 8.28 9.83 23.73 51.70 15.90 37.64 51.30 49.73 39.97 39.19 54.55 27 E4a_E5a KnownJunction 0 3.48 15.52 84.77 52.11 46.60 112.44 24.95 121.05 163.66 153.76 299.65 91.83 56.49 243.81 88.26 200.20 302.94 369.23 156.80 142.92 181.87 196.44 58.30 28 I4 Intron 0 20.01 28.84 30.71 23.75 23.03 23.18 13.11 24.48 27.38 15.48 13.37 33.92 21.33 28.16 14.68 40.96 19.38 33.78 20.45 36.42 22.80 31.20 57.72 29 I4_SR1 SilentIntronRegion 0 11.62 18.70 21.45 17.99 23.15 18.17 9.11 19.82 20.82 12.64 14.16 38.63 23.94 18.57 11.03 34.91 12.97 20.10 17.51 35.16 16.83 25.51 39.78 30 I4_AR1 ActiveIntronRegion 1 9.76 37.60 65.42 32.94 20.43 48.30 15.56 45.70 47.99 23.81 17.11 85.74 40.15 39.93 16.28 68.72 23.83 37.54 36.28 71.77 17.95 58.85 78.36 31 I4_SR2 SilentIntronRegion 0 50.84 26.65 42.13 28.34 22.38 25.71 16.21 31.52 27.87 17.24 12.81 59.99 25.65 26.27 19.61 40.01 24.73 41.27 26.13 47.05 25.43 36.46 62.78 32 I4_AR2 ActiveIntronRegion 0 41.18 24.96 48.12 47.95 18.73 34.68 7.10 38.03 44.24 28.36 20.73 47.23 47.33 22.89 27.69 66.20 32.71 79.12 30.70 55.51 36.86 30.68 105.99 33 I4_AR3 ActiveIntronRegion 0 18.14 35.53 31.31 25.66 24.79 24.26 15.06 24.60 30.21 16.46 13.46 23.02 18.24 34.26 15.74 43.95 21.77 39.45 20.29 33.50 26.53 32.51 66.16 34 E5_Aa NovelBoundary 0 29.19 30.26 74.95 35.46 17.74 17.49 13.60 47.85 54.51 33.55 25.16 33.76 6.33 63.57 44.63 54.52 39.64 45.27 32.94 47.55 60.60 69.81 67.61 35 ER5a ExonRegion 0 21.57 51.36 72.36 41.21 29.12 76.34 27.50 83.09 104.88 93.05 171.47 82.78 64.27 175.92 77.72 204.28 136.31 275.28 104.86 110.54 158.78 97.41 105.65 36 E5a_E6a KnownJunction 0 10.37 81.70 67.86 32.96 30.65 107.95 28.93 91.88 92.91 104.41 136.40 69.47 27.27 193.30 64.90 218.83 95.93 208.05 83.96 127.26 143.88 78.75 96.89 37 I5 Intron 0 4.25 9.35 10.22 12.73 12.53 13.95 4.32 11.84 10.46 12.43 6.78 9.43 1.89 8.58 5.41 13.42 7.45 14.52 5.59 11.38 8.29 10.80 35.10 38 I5_SR1 SilentIntronRegion 0 4.26 9.38 10.26 12.77 12.57 13.99 4.33 11.88 10.50 12.47 6.81 9.46 1.90 8.61 5.43 13.46 7.48 14.56 5.61 11.42 8.32 10.84 35.22 39 ER6a ExonRegion 0 113.07 191.05 189.45 131.64 178.73 194.65 92.03 151.86 173.68 150.63 203.62 125.40 52.78 191.73 144.02 309.04 167.90 272.84 150.39 145.64 145.92 198.32 168.94 40 ER6b ExonRegion 0 8.47 3.05 2.45 1.36 2.68 5.50 0.00 0.00 0.00 0.00 0.00 0.00 2.35 0.81 0.00 1.49 0.00 0.00 1.59 0.00 0.00 0.00 0.00