Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SMAD5 Gene 0 53.45 145.90 69.61 126.00 150.93 108.01 138.96 117.84 86.81 130.69 56.53 131.81 69.48 68.08 32.18 50.37 48.91 112.30 55.63 103.56 123.67 218.57 123.90 2 398807 Transcript 0 6.82 51.83 12.74 10.89 3.99 16.24 50.96 18.03 24.91 22.32 10.00 0.00 0.00 7.95 0.00 11.71 22.25 127.59 8.00 65.07 22.24 38.21 41.57 3 231589 Transcript 1 17.64 81.34 22.87 39.07 36.57 27.51 71.05 28.81 45.29 71.49 54.77 80.82 18.76 87.70 12.57 62.41 49.51 107.17 16.99 64.54 197.60 143.76 88.10 4 405587 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 419332 Transcript 0 1.51 9.01 3.15 1.36 1.53 3.14 10.21 4.69 7.76 3.44 11.87 10.51 6.70 5.57 0.41 5.10 8.49 20.33 5.46 12.77 32.11 16.37 13.84 6 ER1a ExonRegion 1 12.81 47.19 9.24 5.90 27.50 41.01 43.52 14.33 18.09 15.36 40.32 2.02 7.16 37.45 7.10 39.41 39.04 112.76 26.14 59.98 163.97 80.92 130.40 7 E1a_E2a KnownJunction 0 7.48 7.70 6.80 8.89 18.42 5.62 24.33 22.51 25.67 23.53 24.43 5.70 6.49 7.95 4.45 33.07 15.99 101.98 12.33 26.72 53.31 63.01 75.89 8 E1a_E3b KnownJunction 0 6.82 51.83 12.74 10.89 3.99 16.24 50.96 18.03 24.91 22.32 10.00 0.00 0.00 7.95 0.00 11.71 22.25 127.59 8.00 65.07 22.24 38.21 41.57 9 ER2a ExonRegion 0 2.26 10.36 7.06 4.56 10.60 6.26 10.24 19.96 21.43 12.48 28.66 20.44 11.07 17.58 1.70 14.07 25.31 41.98 10.79 22.81 137.10 33.73 34.73 10 E2a_E3b KnownJunction 0 3.70 13.75 9.22 1.40 4.16 13.51 16.43 24.07 22.74 6.18 25.69 48.92 6.82 32.79 5.19 18.71 48.15 36.52 25.88 19.43 191.45 53.95 28.68 11 ER3a ExonRegion 0 1.51 9.01 3.15 1.36 1.53 3.14 10.21 4.69 7.76 3.44 11.87 10.51 6.70 5.57 0.41 5.10 8.49 20.33 5.46 12.77 32.11 16.37 13.84 12 ER3b ExonRegion 0 14.90 79.38 34.86 38.35 46.92 69.11 81.64 65.24 84.59 80.34 100.65 190.49 162.14 139.96 32.22 108.72 94.36 302.41 72.51 149.11 337.41 267.96 253.06 13 E3a_E4a KnownJunction 0 16.45 84.52 54.94 49.24 49.58 179.56 128.69 104.08 123.78 166.84 140.72 231.23 105.67 160.10 70.83 206.61 100.51 376.73 149.46 195.08 391.24 408.55 367.66 14 ER4a ExonRegion 0 21.17 93.63 43.95 48.31 73.30 105.20 125.46 103.23 106.49 130.48 153.74 206.18 158.81 171.11 43.58 141.93 121.79 368.52 119.39 184.19 460.21 308.75 305.60 15 E4a_E5a KnownJunction 0 26.60 74.59 40.95 26.10 130.73 91.71 117.34 83.22 61.95 85.47 102.87 67.67 120.77 111.78 59.58 84.25 77.42 297.43 126.78 117.80 327.48 256.94 218.70 16 ER5a ExonRegion 0 15.36 60.18 39.27 35.09 62.72 89.21 115.26 57.31 59.28 80.28 85.72 105.93 60.66 132.39 32.49 79.58 94.46 174.21 60.31 109.84 247.92 179.50 164.55 17 E5a_E6a KnownJunction 1 24.30 58.67 31.67 43.15 76.15 66.55 80.11 60.58 68.08 81.28 73.33 144.65 33.11 145.68 19.16 64.09 101.45 148.40 26.17 120.80 214.49 193.80 206.49 18 ER6a ExonRegion 0 19.41 56.45 34.96 60.38 75.58 72.36 92.99 61.10 69.34 91.72 87.47 147.49 69.61 116.10 34.55 75.66 92.31 164.32 60.22 132.51 167.34 212.13 169.44 19 E6_Da NovelBoundary 0 0.00 3.35 6.42 5.39 7.39 2.73 6.01 2.55 13.98 9.99 12.53 26.56 6.66 2.47 21.26 11.45 17.48 10.49 0.00 15.34 0.00 26.39 3.84 20 E6a_E7a KnownJunction 1 16.97 75.05 14.04 41.09 96.69 67.35 96.23 90.57 53.18 92.30 75.28 259.43 53.73 97.77 25.96 75.19 90.51 180.07 44.71 129.82 188.85 191.97 131.72 21 I6_AR1 ActiveIntronRegion 0 5.66 6.59 10.62 7.92 3.25 0.54 9.18 0.21 5.17 5.27 6.66 7.41 11.22 3.58 1.21 6.43 11.98 11.09 6.70 12.72 5.72 6.88 5.52 22 ER7a ExonRegion 0 14.91 72.00 29.15 53.08 75.49 69.20 95.36 66.47 71.63 90.83 101.82 145.75 74.82 123.48 34.04 101.85 92.53 239.88 66.87 116.77 312.48 194.06 219.01 23 E7a_E8a KnownJunction 0 24.67 161.42 40.09 69.22 143.29 132.93 181.38 89.75 74.91 94.15 90.39 163.10 102.92 145.86 46.36 91.86 106.97 248.93 95.72 159.86 367.45 193.68 251.74 24 E8_Aa NovelBoundary 0 2.96 6.18 24.60 32.56 8.66 0.00 22.52 13.18 0.00 4.03 9.95 7.20 13.15 0.00 0.00 8.29 9.16 5.89 11.86 16.04 2.78 3.12 0.00 25 ER8a ExonRegion 0 15.66 95.41 25.20 43.73 59.31 49.36 103.89 53.15 54.35 74.95 66.72 106.14 40.88 99.99 24.71 61.42 66.13 153.92 55.16 98.33 266.32 152.13 174.24 26 E8_Da KnownBoundary 0 3.48 36.97 3.19 8.62 16.13 21.35 39.75 11.13 18.78 23.67 21.95 6.90 0.00 5.59 0.00 26.92 12.53 39.92 12.71 26.08 85.31 50.33 35.51 27 E8a_E8b KnownJunction 0 7.04 56.31 20.37 24.67 20.37 8.06 56.40 33.19 32.78 77.28 22.64 0.00 0.00 8.36 5.93 11.88 13.28 88.42 4.52 15.34 79.38 49.35 36.62 28 E8_Ab KnownBoundary 0 6.89 15.26 7.60 16.88 0.00 5.39 16.43 6.94 10.71 23.56 9.42 0.00 0.00 2.59 0.00 27.34 7.85 36.27 4.33 14.32 37.13 38.45 11.78 29 ER8b ExonRegion 1 17.64 81.34 22.87 39.07 36.57 27.51 71.05 28.81 45.29 71.49 54.77 80.82 18.76 87.70 12.57 62.41 49.51 107.17 16.99 64.54 197.60 143.76 88.10 30 ER8c ExonRegion 0 65.35 169.54 81.42 152.80 180.43 119.81 154.77 134.91 91.10 145.76 43.77 126.14 57.89 50.49 32.56 36.28 36.08 70.78 51.33 95.17 68.59 218.00 94.81 31 IG23_AR10 ActiveIntergenicRegion 0 0.82 1.38 1.42 0.00 0.00 0.00 0.00 7.51 17.51 1.49 0.00 0.00 0.00 0.00 0.40 0.00 0.00 1.70 0.00 5.55 0.00 0.00 0.29