Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC008906.1 Gene 0 8.32 9.01 5.56 12.04 11.31 12.13 13.69 15.74 24.59 11.88 12.25 8.65 7.42 14.43 17.85 12.02 32.47 24.82 10.20 14.07 3.30 2.04 2.33 2 501338 Transcript 0 2.01 5.12 1.99 8.57 7.80 7.87 5.48 10.76 19.80 6.18 2.51 2.43 1.91 7.20 5.00 2.35 35.48 10.28 6.18 5.30 1.04 1.00 1.36 3 ER1a ExonRegion 0 10.74 10.11 6.98 12.02 13.08 13.90 16.57 17.06 24.70 13.27 16.12 10.95 9.52 16.97 22.18 15.89 21.74 30.00 10.95 17.11 3.99 2.39 2.66 4 E1_Da NovelBoundary 0 7.11 10.79 11.59 16.15 15.11 15.28 3.53 2.55 10.39 1.16 17.16 13.20 47.56 9.59 8.90 4.36 12.25 21.72 16.57 18.47 0.00 3.06 0.00 5 E1a_E2a KnownJunction 0 0.00 5.79 1.83 5.36 3.74 5.39 3.62 8.42 18.23 1.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 4.80 5.75 0.00 0.00 0.00 6 Ix Intron 0 38.80 5.85 5.82 10.55 27.05 3.57 12.32 13.46 12.24 4.76 28.51 44.22 85.43 45.71 28.29 43.09 36.73 3.38 2.56 6.58 3.34 4.32 2.90 7 Ix_SR1 SilentIntronRegion 0 38.85 5.86 5.82 10.56 27.08 3.58 12.33 13.47 12.25 4.77 28.54 44.27 85.53 45.77 28.32 43.14 36.77 3.39 2.56 6.59 3.34 4.32 2.91 8 Ix Intron 0 54.52 3.18 2.68 6.69 30.28 3.11 10.45 11.93 8.52 3.34 15.88 54.13 85.83 39.72 29.28 25.97 18.19 0.93 1.56 1.80 1.44 4.01 2.87 9 Ix_SR4 SilentIntronRegion 0 66.62 4.60 5.75 7.42 43.47 5.31 13.50 17.19 8.81 5.59 12.17 59.01 105.82 39.28 30.11 20.19 13.72 0.47 0.80 1.34 1.67 2.62 2.22 10 Ix_AR3 ActiveIntronRegion 0 78.76 6.07 4.13 13.38 34.87 3.87 11.30 12.04 10.85 3.71 14.94 51.62 75.25 43.26 34.42 28.90 19.43 2.08 2.08 1.60 1.66 4.13 3.54 11 Ix_SR2 SilentIntronRegion 0 44.46 0.89 0.61 3.96 26.98 1.53 9.12 11.61 7.52 2.08 15.46 61.07 96.54 38.35 25.52 24.66 14.04 0.31 1.24 0.89 1.11 6.07 2.46 12 Ix_AR1 ActiveIntronRegion 0 33.38 2.87 3.44 6.72 22.69 3.17 10.45 8.06 7.90 3.56 41.77 90.75 121.13 58.32 22.28 47.47 57.86 1.52 1.32 3.17 4.81 4.36 2.27 13 Ix_SR1 SilentIntronRegion 0 14.43 3.81 2.47 8.20 18.28 3.59 7.56 8.16 6.90 12.83 10.83 31.45 53.11 29.92 18.64 18.59 29.31 2.05 2.71 5.77 0.84 1.51 1.33 14 ER2a ExonRegion 0 1.16 5.07 0.53 6.80 12.60 7.39 3.46 5.37 16.32 1.87 0.00 4.10 2.02 0.10 2.28 0.00 0.25 17.21 7.57 5.70 0.00 3.43 0.00 15 E2_Da NovelBoundary 0 0.00 3.22 1.45 1.30 3.57 19.76 11.70 2.55 5.61 0.00 0.00 10.50 0.00 2.12 0.00 0.00 0.00 0.00 4.05 0.00 0.00 0.00 3.24 16 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 4.33 0.00 0.00 0.00 1.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 I2_AR1 ActiveIntronRegion 0 0.23 2.62 0.20 5.46 4.47 3.00 8.29 2.75 15.10 2.04 0.07 0.39 2.76 5.24 1.22 0.74 40.00 3.81 4.33 2.40 1.21 0.23 0.75 18 I2_SR2 SilentIntronRegion 0 0.15 2.10 0.21 3.82 2.51 3.85 4.26 2.69 7.75 1.89 0.13 0.31 1.58 2.40 0.72 0.22 21.80 0.91 1.35 1.59 0.35 0.31 0.40 19 I2_AR2 ActiveIntronRegion 0 0.00 0.00 0.00 9.54 2.68 6.32 6.77 6.72 11.12 3.19 0.00 0.00 4.69 3.25 0.00 2.97 27.87 0.00 0.00 2.13 2.20 0.00 0.00 20 I2_AR3 ActiveIntronRegion 0 0.57 8.02 0.00 5.99 2.62 5.96 4.30 4.81 11.59 4.37 0.00 0.00 0.52 1.83 1.02 0.60 26.21 1.64 1.43 1.96 0.22 0.19 0.26 21 I2_SR3 SilentIntronRegion 0 0.40 4.89 0.35 4.13 4.05 5.02 5.06 4.94 10.57 2.05 0.37 0.75 1.28 2.07 1.53 0.28 16.17 1.09 1.20 2.03 0.10 0.78 0.14 22 E3_Aa NovelBoundary 0 12.82 4.93 0.00 6.36 8.40 9.54 4.20 9.12 10.16 1.07 0.00 0.00 0.00 0.00 0.00 0.00 16.83 1.70 3.48 3.20 0.00 0.00 0.00 23 ER3a ExonRegion 0 1.79 6.09 1.32 14.56 3.58 5.41 5.69 12.53 22.75 7.46 1.09 0.12 1.14 7.47 5.43 0.00 85.39 8.34 5.63 2.37 2.47 1.14 1.05 24 E3_Da NovelBoundary 0 7.11 0.00 0.00 0.00 0.00 0.00 0.00 1.60 3.59 2.87 0.00 0.00 0.00 0.00 0.00 0.00 13.18 0.00 0.00 0.00 0.00 0.00 0.00 25 E3a_E4a KnownJunction 0 0.00 3.16 1.83 8.96 12.05 15.56 4.06 18.57 27.31 9.40 0.00 0.00 0.00 17.42 0.00 0.00 67.79 6.92 4.80 0.00 0.00 0.00 3.84 26 ER4a ExonRegion 0 0.38 5.62 1.46 12.29 5.22 7.41 4.95 13.35 27.78 9.70 0.35 1.85 0.70 8.42 5.07 0.54 73.23 6.95 9.54 6.13 0.80 0.02 1.97