Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 VDAC1 Gene 0 165.66 265.74 198.52 125.21 103.51 149.51 142.26 155.23 132.29 120.14 679.47 424.13 337.83 607.89 423.82 386.70 505.09 348.93 155.78 242.61 235.46 261.62 201.22 2 265333 Transcript 0 2.96 9.56 3.89 3.55 3.30 1.95 4.54 8.70 1.86 3.45 14.77 1.11 4.08 7.42 1.75 3.51 8.32 13.50 2.73 4.15 8.18 4.86 3.15 3 395047 Transcript 0 1.11 5.30 1.03 0.13 1.17 9.84 5.18 0.70 0.18 0.60 8.52 0.00 0.00 4.57 4.14 4.59 7.45 2.84 1.07 4.51 5.78 2.37 2.21 4 457550 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 395044 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 466080 Transcript 0 2.13 3.98 2.81 6.78 5.82 2.36 13.41 4.05 3.71 3.51 28.71 6.88 13.29 15.47 15.79 14.58 9.32 8.68 6.22 5.71 3.44 6.27 4.11 7 425992 Transcript 0 0.00 0.00 0.68 0.00 0.00 0.21 0.00 0.58 0.00 1.05 3.23 0.00 0.44 3.32 0.80 3.34 4.78 0.38 0.01 0.96 1.24 2.85 1.01 8 492324 Transcript 0 10.65 12.46 15.67 16.71 24.34 11.12 9.10 14.02 9.96 11.27 51.22 37.43 33.89 47.96 30.23 31.88 42.65 38.33 13.10 27.04 21.86 14.01 20.84 9 489906 Transcript 0 27.36 31.54 14.78 17.37 25.93 13.36 36.93 15.19 12.30 10.39 25.34 32.73 33.03 32.52 48.18 48.32 41.39 37.22 40.04 39.91 16.73 18.27 29.85 10 IG40_AR5 ActiveIntergenicRegion 0 15.34 0.19 1.05 2.11 16.02 0.35 3.90 4.80 2.56 1.15 1.37 3.00 0.94 0.21 0.08 0.52 0.00 0.68 0.75 0.66 0.93 1.08 0.00 11 ER1a ExonRegion 0 2.14 4.19 7.78 3.75 2.62 3.91 3.47 3.77 1.98 2.25 10.68 2.21 0.37 5.06 3.51 7.01 4.47 15.60 5.45 5.56 7.53 4.46 6.30 12 E1a_E4a KnownJunction 0 3.78 14.93 0.00 3.36 3.99 0.00 5.61 13.64 1.74 4.65 18.85 0.00 7.79 9.77 0.00 0.00 12.16 11.40 0.00 2.75 8.83 5.27 0.00 13 ER2a ExonRegion 0 1.11 5.30 1.03 0.13 1.17 9.84 5.18 0.70 0.18 0.60 8.52 0.00 0.00 4.57 4.14 4.59 7.45 2.84 1.07 4.51 5.78 2.37 2.21 14 E2_Ab KnownBoundary 0 19.11 41.31 7.36 0.00 6.88 69.90 39.83 2.46 0.00 3.65 62.91 0.00 12.66 33.49 19.66 34.44 43.95 15.25 4.05 25.57 40.46 16.72 11.18 15 ER2b ExonRegion 1 105.83 234.35 40.24 14.64 150.11 593.97 251.74 15.90 18.92 24.93 304.78 6.67 3.56 309.52 275.15 261.96 289.55 169.25 69.19 118.38 180.79 96.88 139.31 16 E2_Ac KnownBoundary 1 308.05 552.14 107.98 46.71 437.10 1275.63 551.42 49.99 48.32 59.31 652.74 35.56 12.01 734.24 550.10 678.80 660.40 433.15 173.09 285.20 328.96 195.40 337.18 17 ER2c ExonRegion 1 216.68 456.52 115.68 61.48 299.39 765.47 350.03 74.21 68.48 72.84 626.47 22.90 50.34 517.23 393.02 575.34 536.95 578.22 195.58 297.54 257.83 165.71 317.55 18 E2a_E4a KnownJunction 1 132.02 304.02 137.49 68.56 160.36 257.30 168.70 100.55 86.34 75.27 332.77 108.04 218.82 265.64 262.93 354.18 231.32 603.60 140.43 202.11 148.82 101.53 173.37 19 E2a_E4b KnownJunction 0 47.71 44.66 29.01 27.60 31.92 72.40 50.96 22.30 14.81 17.06 59.59 36.61 27.11 38.50 38.82 77.59 47.69 125.85 27.48 57.85 24.15 16.53 73.92 20 ER3a ExonRegion 0 0.01 0.01 0.81 0.00 0.00 0.64 0.00 0.02 0.00 0.85 1.96 0.00 1.32 1.83 2.39 4.09 1.13 1.14 0.04 0.74 1.51 1.27 3.04 21 E3a_E4a NovelJunction 0 3.26 0.00 1.71 2.06 0.00 0.00 0.00 0.00 1.30 1.67 0.00 7.20 0.00 4.94 0.00 3.76 4.39 1.78 4.52 3.26 0.00 11.88 0.00 22 E3a_E4b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 23 ER4a ExonRegion 1 123.82 314.70 118.55 78.03 165.90 301.66 195.62 105.87 101.90 90.89 459.06 42.21 159.46 273.26 330.74 455.48 308.63 681.36 188.73 223.94 209.90 156.78 250.35 24 ER4b ExonRegion 0 103.49 187.09 158.46 100.00 89.70 164.83 107.85 150.33 136.17 116.29 729.49 256.63 317.22 431.03 386.12 390.60 482.27 564.63 182.17 258.59 341.03 280.19 244.93 25 E4a_E5a KnownJunction 1 148.77 130.37 225.98 101.32 47.71 88.13 35.29 182.41 154.63 133.48 1536.34 428.54 543.15 739.48 572.84 346.40 1142.12 277.24 205.94 426.07 671.95 291.72 153.31 26 ER5a ExonRegion 1 93.30 162.01 287.11 138.14 46.31 69.58 39.50 222.73 214.94 190.29 1533.27 353.81 422.23 953.81 500.30 397.27 1232.24 409.79 165.46 500.94 572.17 377.87 178.89 27 E5_Da NovelBoundary 1 47.27 128.99 188.55 86.50 37.95 42.36 33.34 144.83 157.67 133.50 838.63 240.83 210.38 633.53 320.66 236.01 759.33 227.74 83.77 361.00 276.95 302.49 111.40 28 E5a_E9c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29 E5b_E6a KnownJunction 0 129.58 371.38 376.10 268.43 79.46 71.49 88.24 282.47 288.25 247.59 1337.55 841.17 736.32 1497.39 1159.53 974.19 1162.69 621.97 330.83 794.62 463.82 601.25 409.23 30 ER5b ExonRegion 0 86.63 258.70 355.18 199.27 53.90 57.11 52.67 267.54 262.81 222.42 1346.40 632.41 597.98 1334.21 840.74 765.96 1178.66 628.89 266.21 647.72 468.45 525.64 338.97 31 ER6a ExonRegion 0 104.00 424.58 458.98 267.27 181.48 418.38 199.30 370.57 322.78 310.39 1567.05 934.09 850.37 1246.63 1084.23 808.28 1236.65 826.52 321.12 748.14 593.95 568.68 471.26 32 E6a_E7a KnownJunction 0 148.69 707.83 574.64 376.64 233.53 454.17 476.56 420.31 372.71 384.13 1888.16 1324.63 1206.90 1423.69 1203.54 926.00 1423.65 1001.60 288.20 896.63 725.02 764.19 434.16 33 ER7a ExonRegion 0 148.80 612.61 625.45 352.34 161.86 377.83 333.96 472.42 376.41 369.78 2240.16 1365.99 1092.16 1702.20 1078.72 1075.07 1731.04 1005.07 377.80 913.73 883.19 688.50 493.30 34 E7a_E8a KnownJunction 0 0.00 0.00 1.30 2.06 0.00 0.00 12.45 0.00 0.00 1.10 32.01 6.30 15.91 11.77 13.97 12.39 3.55 0.00 4.80 0.00 2.41 5.39 0.00 35 E7a_E9b KnownJunction 0 213.22 730.92 681.88 369.68 203.31 329.07 329.28 525.71 368.54 356.32 2345.54 1470.33 1542.11 2404.45 1615.80 1124.66 1879.29 1001.89 456.67 941.56 961.19 760.09 601.90 36 ER8a ExonRegion 0 4.26 7.96 4.32 11.49 11.65 4.72 14.37 8.09 7.41 5.91 25.41 7.46 10.68 19.16 17.62 16.77 15.09 17.36 7.64 11.43 4.48 7.16 8.21 37 ER9a ExonRegion 0 10.65 12.46 15.67 16.71 24.34 11.12 9.10 14.02 9.96 11.27 51.22 37.43 33.89 47.96 30.23 31.88 42.65 38.33 13.10 27.04 21.86 14.01 20.84 38 E9_Ab KnownBoundary 0 27.19 6.31 8.22 22.11 40.15 0.00 16.96 17.95 9.14 12.38 12.53 12.45 20.78 22.37 17.68 28.20 16.92 40.04 9.60 17.58 5.56 9.37 22.62 39 ER9b ExonRegion 0 246.96 523.65 627.21 396.74 193.62 241.40 197.63 452.18 382.78 372.83 2475.91 1709.33 1411.82 2126.04 1416.91 1314.55 1851.86 1472.25 505.60 816.79 997.49 762.17 670.14 40 E9_Ac KnownBoundary 0 357.03 747.37 613.17 420.16 267.23 403.57 279.90 441.92 329.22 381.39 2623.61 1723.01 1577.98 2204.20 1432.23 1414.84 2156.05 1493.03 564.91 741.31 1043.36 765.66 732.07 41 ER9c ExonRegion 0 264.12 778.95 525.89 321.46 225.82 346.78 311.31 435.65 372.07 352.60 2631.44 1121.20 911.00 2402.12 1373.57 1282.52 2011.35 1360.98 587.07 716.47 1112.87 803.29 636.67 42 E9a_E10b KnownJunction 0 434.23 1030.28 569.05 326.50 303.57 456.67 486.01 473.42 439.00 372.63 2202.82 1446.62 1175.41 2808.48 1896.17 1494.57 1877.51 1313.99 628.82 706.99 1062.51 902.21 722.68 43 ER9d ExonRegion 0 0.00 0.00 1.23 0.00 0.00 0.00 0.00 1.73 0.00 2.29 7.73 0.00 0.00 8.12 0.00 5.94 13.20 0.00 0.00 2.13 2.20 4.17 0.00 44 I9_AR1 ActiveIntronRegion 0 2.42 8.13 5.25 28.43 4.20 1.83 0.00 3.46 7.23 2.29 0.00 0.00 9.38 30.86 6.22 25.90 12.73 10.82 6.37 2.13 2.20 6.25 8.81 45 ER10a ExonRegion 0 27.36 31.54 14.78 17.37 25.93 13.36 36.93 15.19 12.30 10.39 25.34 32.73 33.03 32.52 48.18 48.32 41.39 37.22 40.04 39.91 16.73 18.27 29.85 46 E10_Ab KnownBoundary 0 20.30 21.05 1.63 7.46 24.02 0.00 5.48 12.16 4.60 3.63 12.63 13.95 13.64 14.13 15.20 49.13 16.08 16.75 4.61 8.37 0.00 2.76 7.94 47 ER10b ExonRegion 0 469.29 804.40 557.55 331.38 186.48 323.85 375.39 402.19 389.32 313.17 1724.43 823.38 564.62 1816.75 1127.43 1274.76 1440.27 1302.11 460.45 621.97 750.80 714.15 650.84 48 E10a_E11a KnownJunction 0 590.40 834.52 481.56 303.06 217.15 391.99 402.06 429.43 341.46 284.20 1181.56 983.57 663.59 2263.89 1462.02 1251.47 1009.26 1003.13 535.92 647.61 557.48 920.22 710.05 49 I10_SR3 SilentIntronRegion 0 35.62 28.61 21.48 18.02 17.75 11.37 20.05 7.58 6.96 10.69 13.34 17.41 23.30 15.42 13.32 17.83 21.94 7.78 6.10 15.86 6.70 18.56 10.16 50 ER11a ExonRegion 0 397.14 728.44 542.97 349.35 228.91 351.43 373.43 431.96 376.60 343.60 1961.33 889.03 670.27 2053.84 1351.13 1202.02 1441.30 893.61 501.86 650.69 688.28 826.80 613.25 51 E11a_E12a KnownJunction 0 593.44 980.42 678.48 458.38 397.11 431.97 527.30 456.25 458.42 415.66 2642.62 1306.63 939.06 2312.51 1516.29 1324.18 1709.49 764.19 551.45 798.20 803.97 984.39 680.34 52 ER12a ExonRegion 0 621.90 848.46 764.47 498.37 487.36 474.02 564.78 608.26 522.89 440.76 2258.05 1591.76 1138.82 1993.99 1455.26 1312.66 1532.46 882.63 514.26 754.99 562.77 1080.74 693.86 53 E12_Da KnownBoundary 0 1088.19 1220.37 940.68 694.38 747.11 540.94 855.03 738.02 634.14 550.32 3015.40 2323.66 1999.22 2544.72 1930.78 1386.47 1964.56 723.98 635.31 946.61 505.40 1141.94 732.50 54 ER12b ExonRegion 0 289.97 330.32 161.56 105.25 116.54 134.09 173.29 131.21 99.59 92.78 439.61 420.91 318.56 425.25 303.31 237.47 279.81 131.98 103.35 133.75 77.03 206.95 119.21 55 E12_Db KnownBoundary 0 235.38 162.01 86.90 69.16 65.70 76.55 74.55 108.97 54.72 65.73 149.20 36.91 31.65 26.25 86.16 91.26 108.37 28.98 42.26 79.45 10.81 35.76 62.91 56 ER12c ExonRegion 0 2.12 0.11 1.23 2.20 0.00 0.00 0.00 1.63 1.17 0.00 1.93 0.00 0.00 0.00 0.00 0.00 2.75 0.82 0.00 1.95 0.00 0.00 0.00 57 ER12d ExonRegion 0 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00