Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C5orf56 Gene 0 24.68 4.38 3.29 6.04 9.73 6.21 5.37 11.62 19.82 2.36 48.09 52.74 81.78 45.46 47.03 37.53 16.10 4.42 0.65 2.52 10.57 6.74 10.91 2 378953 Transcript 0 20.96 0.96 2.53 3.67 4.68 4.51 1.39 8.28 9.04 0.11 27.19 8.54 16.52 22.68 40.78 25.66 2.70 1.42 0.31 2.40 8.81 5.87 6.10 3 461203 Transcript 0 22.24 0.69 1.87 4.62 5.48 3.07 3.46 8.57 11.91 0.96 43.26 14.29 36.20 61.87 54.22 39.79 16.31 1.63 0.00 4.66 11.87 2.11 12.75 4 337752 Transcript 0 16.05 3.96 2.40 4.65 8.35 5.39 5.21 8.54 17.75 1.86 34.39 55.54 87.01 31.48 28.46 24.69 11.78 4.10 0.31 1.77 5.50 4.73 8.50 5 378947 Transcript 0 13.02 0.38 1.36 2.02 3.33 2.40 1.73 4.01 5.38 0.74 51.55 18.81 32.09 49.16 51.19 42.71 13.34 7.54 0.99 2.12 10.27 3.24 10.68 6 407797 Transcript 0 0.33 0.00 0.00 0.00 0.14 0.36 0.00 0.13 1.05 0.00 0.21 0.16 0.01 0.17 0.37 0.46 2.02 0.14 0.00 0.00 2.83 0.11 0.00 7 464024 Transcript 0 0.37 0.00 0.00 0.00 1.98 0.03 0.00 1.49 0.35 0.00 0.34 0.62 0.00 0.20 6.41 12.38 0.57 0.00 0.00 0.01 0.38 1.71 0.04 8 ER1a ExonRegion 0 10.03 1.13 0.14 0.26 1.18 2.69 1.19 1.90 1.74 0.33 5.82 1.05 0.53 6.77 6.93 9.11 3.71 0.23 0.94 0.43 6.07 1.15 6.41 9 E1_Ab KnownBoundary 0 71.57 2.83 3.67 3.80 3.82 16.98 0.00 10.10 9.58 2.93 22.80 0.00 6.98 7.83 11.25 42.21 11.87 1.74 0.00 0.00 13.78 11.33 23.13 10 E1_Ac KnownBoundary 0 51.27 0.00 0.00 0.00 4.33 0.00 1.77 4.27 5.09 0.00 27.69 0.00 0.00 56.80 37.46 87.84 16.27 1.70 0.00 0.00 2.84 3.12 15.62 11 ER1b ExonRegion 1 94.19 3.56 1.23 1.36 5.35 14.67 1.32 8.64 11.73 2.29 49.05 3.25 4.69 75.32 56.94 104.02 29.30 4.62 0.00 2.13 11.02 8.33 32.30 12 ER1c ExonRegion 0 59.67 1.88 1.93 0.05 1.80 7.58 0.99 3.82 7.20 0.82 52.60 12.74 8.21 67.49 87.09 96.77 25.33 4.19 0.00 0.98 7.88 4.01 13.44 13 E1a_E2a KnownJunction 0 18.23 0.00 4.73 0.00 0.00 2.90 4.90 6.74 5.38 0.00 21.43 6.00 19.15 25.66 37.46 22.39 0.00 4.85 0.00 0.00 11.37 9.31 12.46 14 ER2a ExonRegion 1 11.23 7.39 4.50 4.74 6.51 4.48 1.36 7.76 25.09 2.29 72.86 18.09 22.22 42.72 63.88 46.07 27.53 2.29 3.81 5.81 17.18 8.39 14.11 15 E2a_E3a KnownJunction 1 22.15 24.73 10.17 5.49 6.79 7.67 2.03 8.79 45.54 2.66 116.45 6.30 13.31 72.52 142.90 90.40 25.25 9.37 4.05 5.56 8.46 22.96 35.51 16 Ix_AR4 ActiveIntronRegion 0 4.21 0.00 1.53 0.64 0.42 0.86 0.90 0.00 0.86 0.00 2.45 12.90 11.29 11.53 15.41 14.55 12.03 2.15 0.00 0.00 2.53 0.00 0.46 17 Ix_SR4 SilentIntronRegion 0 2.40 0.33 0.34 0.57 0.86 0.29 1.31 0.41 3.09 0.27 5.87 14.02 10.29 9.99 8.67 10.66 5.24 1.18 0.38 0.09 2.61 0.50 1.88 18 Ix Intron 0 3.17 0.00 0.23 0.25 0.00 0.46 2.64 0.00 2.52 0.00 5.78 28.31 23.63 4.68 4.28 8.15 5.76 1.72 0.00 0.00 0.82 0.78 1.46 19 Ix_SR1 SilentIntronRegion 0 3.17 0.00 0.23 0.25 0.00 0.46 2.65 0.00 2.53 0.00 5.80 28.36 23.69 4.69 4.29 8.17 5.78 1.72 0.00 0.00 0.83 0.78 1.47 20 I2_AR2 ActiveIntronRegion 0 6.82 1.01 0.90 0.94 2.62 1.51 3.60 4.76 3.49 0.49 2.52 10.05 21.77 0.73 6.29 8.20 9.55 1.71 0.00 0.88 1.74 0.00 6.01 21 ER3a ExonRegion 1 17.94 9.05 7.47 8.31 5.02 8.02 3.77 14.61 40.08 1.20 109.31 25.65 39.28 135.86 154.85 144.52 25.33 6.19 0.96 3.35 22.31 14.90 30.61 22 E3_Da KnownBoundary 1 14.82 0.00 1.15 6.23 7.89 8.23 3.84 13.80 13.57 1.53 24.85 38.56 13.64 58.80 46.36 104.67 17.02 2.57 0.00 0.00 15.20 0.00 10.76 23 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26.85 0.00 6.17 11.48 13.60 11.19 0.00 0.00 0.00 0.00 0.00 0.00 3.76 24 E3a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 0.00 0.00 0.00 3.16 25 E3a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.65 0.00 0.00 0.00 4.82 0.00 0.00 26 E3a_E7a KnownJunction 1 6.22 0.00 5.32 6.79 3.65 5.62 0.00 12.98 14.99 0.00 58.75 0.00 5.84 56.39 92.71 55.54 4.39 0.00 0.00 3.20 11.43 15.12 8.54 27 ER3b ExonRegion 0 22.24 0.69 1.87 4.62 5.48 3.07 3.46 8.57 11.91 0.96 43.26 14.29 36.20 61.87 54.22 39.79 16.31 1.63 0.00 4.66 11.87 2.11 12.75 28 E3_Db NovelBoundary 0 29.63 0.00 0.00 0.00 12.39 5.34 5.79 15.77 12.36 0.00 32.32 5.85 26.46 60.16 47.22 47.68 23.28 2.57 4.14 5.82 8.71 0.00 4.35 29 I3 Intron 0 35.79 2.07 1.00 4.17 12.35 3.90 6.86 8.34 13.80 1.83 45.28 60.90 82.63 63.23 47.48 49.87 22.32 4.08 1.44 2.61 9.46 3.73 10.18 30 I3_SR1 SilentIntronRegion 0 31.43 1.48 0.38 2.74 25.01 5.89 8.11 2.94 6.49 1.60 28.90 66.37 67.73 43.14 34.38 33.01 16.44 0.29 1.32 2.21 3.20 3.25 4.27 31 I3_AR1 ActiveIntronRegion 0 45.56 1.99 1.12 6.21 12.92 3.48 8.50 15.28 21.73 1.78 57.09 55.94 76.17 78.50 58.77 67.62 28.86 5.62 2.92 3.12 12.40 4.20 10.06 32 I3_SR2 SilentIntronRegion 0 36.91 2.31 1.31 4.14 8.96 4.00 5.56 6.63 10.79 1.83 44.85 64.79 115.69 64.08 44.26 47.00 22.85 3.88 0.85 2.07 8.60 3.90 12.46 33 I3_AR2 ActiveIntronRegion 1 19.53 2.37 0.78 1.92 4.29 2.24 5.15 4.91 13.54 2.24 42.43 56.15 39.29 55.21 48.09 41.45 15.27 5.93 0.00 3.27 12.93 3.01 12.19 34 E4_Aa NovelBoundary 0 73.72 3.09 0.00 4.76 8.66 7.84 10.25 29.37 12.73 0.00 71.81 18.01 66.23 70.34 69.72 96.64 50.58 19.36 0.00 5.88 27.43 5.57 22.71 35 ER4a ExonRegion 0 26.05 0.76 2.73 4.04 6.66 4.79 3.46 8.01 10.76 1.49 76.25 37.61 58.02 86.85 88.78 74.23 26.69 15.08 1.98 4.23 20.55 6.48 17.61 36 E4_Da NovelBoundary 0 20.23 3.35 0.00 1.83 11.80 0.00 4.46 14.54 33.88 9.94 162.62 49.97 140.25 61.80 143.77 73.14 73.96 9.20 0.00 5.94 33.61 8.08 12.38 37 I4 Intron 1 16.19 1.96 1.76 3.47 5.63 6.17 3.60 7.27 16.09 2.96 58.28 33.85 50.93 64.28 42.51 53.49 23.62 7.89 1.03 3.32 11.83 5.36 13.01 38 I4_AR1 ActiveIntronRegion 1 28.59 1.49 2.18 4.10 8.11 5.22 5.11 10.89 14.88 2.83 80.63 44.79 66.82 80.56 67.75 76.47 27.60 10.96 2.05 3.52 13.97 6.13 17.81 39 I4_SR1 SilentIntronRegion 1 11.63 2.14 1.61 3.24 4.72 6.53 3.05 5.94 16.55 3.02 50.11 29.86 45.12 58.36 33.24 45.08 22.18 6.76 0.65 3.25 11.06 5.09 11.25 40 E5_Aa NovelBoundary 0 49.86 3.03 3.67 2.03 3.82 19.59 4.50 20.74 41.81 2.47 96.50 85.53 250.80 132.85 58.84 60.33 44.04 16.54 0.00 12.08 32.12 11.08 27.06 41 ER5a ExonRegion 0 32.10 7.92 4.79 9.29 16.70 10.77 10.43 17.08 30.03 3.72 68.77 111.07 174.02 62.97 56.92 49.37 23.56 5.64 0.63 3.54 11.00 9.46 13.85 42 E5_Da NovelBoundary 0 31.41 6.18 1.30 17.15 18.93 6.30 5.79 18.20 31.34 3.98 47.06 72.77 180.18 39.73 51.67 64.00 20.20 2.28 3.95 0.00 13.53 16.78 15.54 43 I5 Intron 0 19.32 2.46 2.25 6.42 9.64 8.08 5.31 11.93 19.26 3.05 40.77 25.78 40.23 38.09 29.27 44.83 17.04 6.73 0.86 3.08 13.72 6.73 12.48 44 I5_SR1 SilentIntronRegion 1 18.33 1.76 2.08 3.39 6.10 9.99 3.97 8.22 15.07 3.34 43.51 40.89 67.49 37.83 27.48 47.09 15.63 9.62 1.61 3.14 13.58 3.51 12.01 45 I5_AR1 ActiveIntronRegion 0 9.60 1.25 1.19 1.66 5.25 8.21 3.41 7.11 9.11 3.43 24.54 16.19 34.76 29.98 21.23 34.33 8.63 8.50 0.69 4.43 15.55 3.64 9.33 46 I5_AR2 ActiveIntronRegion 1 19.66 2.31 0.92 5.75 1.41 4.30 4.50 19.71 19.66 4.13 43.37 25.38 38.44 47.92 34.31 55.99 12.82 10.96 1.39 4.84 17.71 4.77 14.78 47 I5_AR3 ActiveIntronRegion 1 12.35 1.67 0.20 0.65 6.18 6.58 0.98 13.35 15.41 1.15 28.80 14.27 21.60 22.84 18.45 19.15 15.04 4.21 0.63 0.17 20.74 1.88 4.28 48 I5_AR4 ActiveIntronRegion 0 20.25 2.21 0.37 8.39 12.90 7.39 8.32 10.67 22.59 2.51 37.92 43.24 81.05 50.43 26.55 49.30 17.26 4.48 1.06 1.77 13.52 9.49 10.23 49 I5_AR5 ActiveIntronRegion 0 10.71 1.00 1.58 8.24 9.06 6.60 9.25 9.72 17.33 2.56 39.05 37.33 52.74 33.03 18.61 36.57 17.61 2.28 1.34 2.29 12.15 6.39 8.98 50 I5_SR2 SilentIntronRegion 1 19.76 2.93 3.01 6.72 9.56 7.86 4.46 12.84 20.97 2.74 43.23 19.56 26.58 38.19 30.53 46.56 18.34 7.30 0.65 3.15 13.65 6.98 13.59 51 I5_AR6 ActiveIntronRegion 0 33.59 2.43 0.82 9.03 19.08 11.35 9.31 15.73 15.12 6.97 31.14 21.83 44.61 29.40 44.73 35.44 13.57 2.96 0.63 4.96 13.54 10.54 14.30 52 I5_SR3 SilentIntronRegion 1 10.30 0.00 0.00 1.00 8.92 1.71 1.24 4.26 1.98 3.44 5.67 10.10 5.63 2.49 19.34 11.29 2.42 0.00 0.00 0.99 0.73 0.00 0.00 53 E6_Aa NovelBoundary 0 19.63 19.60 13.69 31.83 35.65 27.09 12.67 28.22 40.16 1.67 36.64 37.66 93.99 44.79 55.63 27.34 13.84 2.16 0.00 3.00 19.21 17.21 0.00 54 ER6a ExonRegion 0 0.66 0.00 0.00 0.00 0.28 0.73 0.00 0.27 0.46 0.00 0.42 0.32 0.02 0.35 0.74 0.92 0.40 0.28 0.00 0.00 0.84 0.22 0.00 55 E6_Ab KnownBoundary 0 24.23 0.00 0.00 0.00 0.00 0.00 0.00 2.55 1.62 0.00 4.26 0.00 6.33 0.00 0.00 0.00 4.68 0.00 0.00 0.00 0.00 0.00 4.27 56 ER6b ExonRegion 0 0.57 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.37 0.00 0.00 0.00 0.00 0.00 0.40 0.00 57 E6_Da KnownBoundary 0 26.38 6.25 7.48 5.09 7.56 2.27 1.77 19.67 15.36 4.78 7.63 0.00 14.12 27.37 28.18 15.64 4.39 2.11 0.00 2.62 11.43 8.21 4.35 58 ER6c ExonRegion 0 0.74 0.00 0.01 0.00 0.82 0.05 0.00 0.43 0.69 0.01 0.69 1.25 0.00 0.40 2.07 4.68 1.13 0.00 0.00 0.03 0.75 1.08 0.08 59 E6_Db NovelBoundary 0 50.60 0.00 6.83 19.64 33.53 16.41 15.02 28.71 27.46 6.80 53.49 0.00 26.95 26.37 44.13 39.48 20.85 11.40 0.00 0.00 21.68 14.51 16.13 60 E6b_E7a KnownJunction 0 0.00 0.00 0.00 0.00 3.14 0.00 0.00 2.55 0.00 0.00 0.00 0.00 0.00 0.00 10.75 20.08 0.00 0.00 0.00 0.00 0.00 2.33 0.00 61 Ix Intron 0 57.44 5.98 4.18 5.98 14.00 10.79 4.33 9.26 9.63 0.00 13.27 7.99 40.77 25.86 17.24 29.15 1.08 1.50 0.00 2.09 6.48 10.90 6.72 62 Ix_SR1 SilentIntronRegion 0 57.82 6.02 4.21 6.01 14.09 10.86 4.36 9.32 9.69 0.00 13.36 8.04 41.03 26.01 17.35 29.34 1.09 1.51 0.00 2.10 6.53 10.97 6.76 63 I6 Intron 0 46.75 3.63 7.37 8.64 15.97 10.42 3.55 16.57 21.51 2.38 21.14 15.72 28.50 28.80 44.17 27.94 9.08 5.25 1.37 1.75 10.16 9.46 12.80 64 I6_SR1 SilentIntronRegion 0 29.81 2.73 6.13 5.91 17.96 9.84 2.07 16.14 14.81 2.68 17.28 36.04 75.37 34.63 35.35 25.93 8.86 1.23 0.00 0.95 7.39 7.92 9.20 65 I6_AR1 ActiveIntronRegion 0 27.68 2.64 5.62 6.20 15.15 11.92 4.59 8.73 22.51 1.66 20.21 21.08 21.91 35.80 47.41 19.76 7.63 8.34 0.00 0.31 9.75 12.90 13.93 66 I6_SR2 SilentIntronRegion 0 8.40 0.00 5.11 1.58 4.25 3.07 0.55 4.90 14.11 0.20 7.78 0.00 2.35 16.20 21.07 4.95 0.00 3.88 0.00 0.00 7.73 7.96 8.81 67 I6_AR2 ActiveIntronRegion 1 68.03 5.03 9.03 11.91 17.77 11.14 4.02 22.56 24.44 3.02 25.12 9.37 21.42 25.73 49.40 36.53 11.43 5.25 2.70 3.00 11.67 8.54 14.11 68 E7_Aa NovelBoundary 0 50.23 9.60 7.81 16.05 22.67 17.60 5.26 33.80 48.41 3.06 31.96 12.00 5.84 40.85 64.28 30.33 13.37 4.35 0.00 5.62 9.39 5.33 23.39 69 ER7a ExonRegion 0 68.21 8.61 9.62 17.65 19.67 7.55 5.40 35.85 58.56 7.08 80.46 29.94 30.95 52.59 93.24 41.85 17.96 5.19 0.47 1.68 26.37 20.59 19.05 70 E7_Da KnownBoundary 0 139.80 6.45 5.94 12.99 35.82 17.04 7.95 38.28 25.69 4.94 60.12 86.43 111.03 21.07 39.43 28.62 0.00 8.58 0.00 6.33 21.81 6.06 11.10 71 ER7b ExonRegion 1 46.63 1.73 2.13 3.97 9.21 5.23 3.00 9.96 10.39 0.00 17.00 24.58 43.18 4.87 22.70 12.33 0.00 4.02 0.00 3.57 8.94 1.35 3.37 72 IG20 Intergenic 0 7.96 0.91 7.01 5.85 3.53 2.45 3.85 9.87 19.97 1.40 2.47 4.34 2.97 1.30 5.47 5.50 5.26 3.16 0.65 1.39 6.12 3.17 23.26 73 IG20_SR1 SilentIntergenicRegion 0 3.91 0.39 5.75 3.56 2.04 1.50 2.12 6.85 14.04 1.16 0.86 2.00 1.02 1.09 3.02 2.74 2.96 2.50 0.16 1.01 4.42 1.56 13.28 74 IG20_AR1 ActiveIntergenicRegion 0 5.00 1.33 8.69 5.95 3.77 2.30 1.81 13.93 23.63 1.85 4.66 2.67 0.00 1.81 4.76 4.79 5.06 5.19 0.98 0.98 4.69 2.61 23.95 75 IG20_SR2 SilentIntergenicRegion 0 5.88 0.64 5.66 6.70 2.49 3.45 4.36 12.75 24.05 1.20 2.63 4.75 2.99 0.90 2.54 5.53 2.85 5.86 0.19 1.78 5.23 4.36 18.63 76 IG20_AR2 ActiveIntergenicRegion 0 10.58 0.00 7.22 8.93 2.68 1.83 1.03 9.41 17.70 0.00 3.87 5.29 0.00 0.00 1.29 8.92 3.30 6.98 3.19 0.00 6.61 2.55 12.40 77 IG20_AR3 ActiveIntergenicRegion 0 16.45 0.00 5.74 5.51 1.34 1.83 0.00 10.68 17.74 0.00 3.60 8.66 4.05 2.88 1.71 4.05 7.65 3.61 4.20 2.13 5.31 2.08 23.23 78 IG20_AR4 ActiveIntergenicRegion 0 9.00 1.46 3.75 3.53 5.40 4.28 4.58 14.11 22.04 0.73 2.36 12.45 9.00 0.83 4.18 4.16 7.04 1.34 3.95 2.00 7.49 2.16 24.38 79 IG20_SR3 SilentIntergenicRegion 0 13.56 1.44 9.26 8.77 5.18 2.97 6.08 10.98 24.78 1.81 3.90 5.60 4.60 1.64 9.68 9.16 8.33 3.14 0.56 1.69 8.39 5.09 36.10