Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 MARCH3 Gene 0 34.86 7.82 8.32 4.26 11.12 4.53 6.52 6.00 8.50 6.31 12.91 8.23 32.64 14.93 51.31 10.94 11.90 9.93 2.99 7.64 4.08 7.69 4.16 2 308660 Transcript 0 29.81 4.45 10.64 7.37 10.69 5.26 6.14 8.45 14.10 8.12 31.35 6.34 41.07 32.22 114.91 22.98 23.36 8.61 1.41 4.90 10.59 14.48 10.66 3 IG42_AR17 ActiveIntergenicRegion 0 13.38 14.20 10.73 17.69 23.26 13.64 13.68 14.14 10.52 12.30 9.95 25.60 9.07 10.10 18.06 12.69 13.37 6.54 6.06 14.69 1.53 0.22 0.64 4 IG42_SR10 SilentIntergenicRegion 0 5.32 4.53 3.30 5.85 5.45 5.37 7.71 6.58 2.86 5.77 1.65 16.23 9.07 4.02 3.43 5.94 2.83 1.25 3.33 8.94 0.10 0.15 0.00 5 IG42_AR14 ActiveIntergenicRegion 0 14.95 16.32 21.11 23.89 21.38 20.31 20.75 20.05 15.90 20.16 7.49 26.04 13.28 8.96 10.26 11.31 15.06 15.19 15.62 19.70 1.97 1.50 1.71 6 IG42_SR8 SilentIntergenicRegion 0 49.30 61.25 20.90 35.07 26.33 9.94 22.06 14.48 5.91 16.48 1.16 27.51 10.25 5.18 12.85 5.37 9.28 4.24 5.12 15.38 0.88 1.26 0.59 7 IG42_AR13 ActiveIntergenicRegion 0 27.47 23.33 23.65 29.13 35.48 13.82 21.73 20.36 12.31 17.54 4.66 8.40 9.48 8.25 7.98 10.13 10.49 9.51 16.59 17.44 1.94 1.10 1.04 8 IG42_AR12 ActiveIntergenicRegion 0 19.05 20.24 24.45 20.26 22.01 6.50 23.95 27.97 9.43 19.18 1.41 21.25 11.73 13.73 1.05 5.81 7.20 8.40 14.77 14.51 0.00 0.19 0.00 9 IG42_AR11 ActiveIntergenicRegion 0 8.82 12.88 19.81 14.54 12.04 7.34 19.20 24.20 10.09 14.91 0.00 17.32 10.94 14.62 0.00 8.92 3.85 11.09 10.62 19.15 0.00 2.08 0.00 10 IG42_SR7 SilentIntergenicRegion 0 7.83 17.27 14.78 17.15 18.02 14.34 19.55 13.15 8.02 12.34 4.48 16.21 12.39 5.01 8.56 3.80 7.20 5.97 7.92 15.91 2.28 1.47 1.22 11 IG42_AR10 ActiveIntergenicRegion 0 10.60 18.11 16.01 20.26 22.21 15.72 21.37 17.21 9.77 16.40 5.89 15.48 9.69 6.54 4.35 5.77 7.66 6.54 11.81 14.38 1.46 0.73 0.91 12 IG42_SR6 SilentIntergenicRegion 0 5.00 7.66 3.36 10.34 15.98 12.75 17.22 11.99 7.68 14.68 3.89 13.09 9.54 8.71 6.38 5.46 6.34 7.05 6.36 8.92 1.95 0.46 0.00 13 IG42_AR9 ActiveIntergenicRegion 0 4.23 14.24 7.35 12.27 10.70 1.83 16.11 19.01 8.65 22.36 9.34 8.66 0.00 3.25 0.00 14.86 3.30 11.09 12.21 7.09 0.00 0.00 0.00 14 IG42_AR8 ActiveIntergenicRegion 0 6.95 6.67 9.69 15.00 14.51 13.80 15.38 12.68 13.84 20.22 6.11 12.25 7.62 7.40 5.14 6.95 12.16 9.70 10.81 11.99 4.56 0.87 2.23 15 IG42_SR4 SilentIntergenicRegion 0 6.06 3.90 10.91 16.26 19.73 10.81 17.03 11.53 10.58 20.46 6.56 5.30 0.00 5.71 5.59 14.89 8.79 9.51 9.95 16.61 3.51 0.38 2.78 16 IG42_AR7 ActiveIntergenicRegion 0 3.88 0.00 9.19 16.35 7.14 9.47 17.65 20.74 9.88 13.57 3.87 5.05 0.00 1.62 5.80 5.94 13.20 5.54 6.37 15.96 5.88 0.00 2.94 17 IG42_AR6 ActiveIntergenicRegion 0 6.84 0.94 7.35 16.35 6.79 7.48 21.08 21.01 8.74 12.70 1.93 11.32 0.00 2.50 4.46 4.34 13.97 4.41 9.80 9.49 4.41 0.00 2.94 18 IG42_AR5 ActiveIntergenicRegion 0 13.86 10.03 10.84 19.32 24.05 17.82 21.28 23.92 10.88 19.64 4.21 18.89 3.64 5.36 8.04 11.66 7.50 7.21 12.06 12.47 2.97 1.23 1.42 19 IG42_SR3 SilentIntergenicRegion 0 11.94 9.79 6.85 17.08 20.36 8.02 10.20 10.40 10.71 9.57 2.45 7.53 4.64 1.83 4.85 3.03 4.27 1.71 4.07 7.63 0.50 0.87 0.45 20 IG42_AR4 ActiveIntergenicRegion 0 13.81 8.48 7.02 19.82 15.60 9.70 9.20 12.35 12.05 8.08 3.13 6.85 7.66 3.21 8.05 5.38 2.70 4.22 8.24 6.00 0.60 0.57 1.44 21 ER1a ExonRegion 0 20.51 1.40 8.36 3.61 6.04 4.50 4.79 5.84 6.47 1.49 17.99 2.47 14.26 15.41 58.14 8.63 20.40 3.70 0.72 0.48 11.87 4.94 5.21 22 E1a_E2a KnownJunction 0 10.67 0.00 8.90 11.92 0.00 2.21 0.00 12.86 12.88 3.28 27.32 0.00 6.33 55.51 197.05 15.38 8.70 7.34 0.00 0.00 10.26 20.82 11.52 23 I1_SR3 SilentIntronRegion 0 4.23 0.69 0.80 1.00 2.87 0.09 2.54 2.73 1.86 0.67 0.19 1.21 15.44 0.13 2.07 1.28 1.29 0.63 0.78 2.18 0.00 0.00 0.86 24 I1_AR6 ActiveIntronRegion 1 6.16 2.03 2.45 0.00 9.49 0.00 0.96 2.36 8.65 2.29 0.00 0.00 28.57 0.00 5.80 0.00 6.60 1.85 0.00 2.13 0.00 2.08 0.00 25 I1_AR7 ActiveIntronRegion 1 8.47 2.03 2.45 0.00 10.70 0.00 1.06 1.73 8.77 2.29 0.00 0.00 34.24 0.00 5.51 0.00 6.60 1.85 0.00 2.13 0.00 2.08 0.00 26 I1_SR7 SilentIntronRegion 0 5.07 2.61 2.13 1.42 3.60 0.00 3.64 2.71 2.37 0.80 1.02 2.53 20.47 0.25 3.48 3.99 1.54 2.74 1.49 3.73 0.13 0.24 1.03 27 I1_AR9 ActiveIntronRegion 0 12.58 2.10 3.93 1.81 5.54 1.90 2.62 1.71 1.99 0.50 0.57 3.00 11.80 0.82 4.84 4.72 2.33 3.34 2.35 5.29 0.00 0.31 0.00 28 I1_SR8 SilentIntronRegion 0 20.89 1.21 0.96 2.69 6.36 0.54 5.61 4.17 1.43 1.15 1.29 2.71 16.56 0.50 4.57 6.73 2.75 7.55 0.71 5.85 0.81 0.77 1.96 29 I1_AR10 ActiveIntronRegion 0 13.82 2.72 3.55 2.93 4.57 1.09 4.90 2.65 1.81 1.14 1.61 5.84 21.54 0.91 6.31 7.03 2.32 12.50 4.49 7.43 1.13 0.93 1.46 30 I1_SR9 SilentIntronRegion 0 9.90 1.53 1.50 2.56 4.68 0.82 4.64 1.21 1.74 0.64 0.89 3.44 17.61 1.02 5.84 3.69 1.78 3.95 1.31 4.67 0.32 0.41 1.44 31 I1_AR11 ActiveIntronRegion 0 35.45 2.63 2.77 4.25 8.92 0.60 6.65 3.77 2.51 0.84 0.94 2.50 24.71 0.90 7.76 4.62 2.95 3.05 2.08 2.89 0.36 0.83 3.35 32 I1_SR10 SilentIntronRegion 0 10.48 0.67 1.04 1.95 3.53 0.65 4.64 2.31 2.87 1.25 1.36 4.08 22.82 0.87 7.01 7.19 3.56 6.86 1.61 5.35 0.48 0.94 1.94 33 I1_SR12 SilentIntronRegion 0 4.48 1.39 1.12 2.08 3.59 0.62 3.82 2.03 1.98 1.03 1.73 5.73 17.69 1.63 3.47 5.18 3.34 4.67 1.85 5.82 0.41 0.10 1.43 34 I1_AR15 ActiveIntronRegion 0 10.79 0.00 1.23 3.27 10.70 0.00 1.59 0.00 1.24 3.44 1.16 0.43 2.11 3.25 2.90 30.91 3.47 10.53 6.37 8.72 3.31 0.00 0.00 35 I1_AR16 ActiveIntronRegion 0 12.70 0.00 1.23 2.73 12.04 0.00 2.81 0.65 1.24 1.43 0.00 4.33 4.69 1.83 5.80 30.46 4.95 9.24 0.80 14.89 4.41 0.00 1.84 36 I1_AR17 ActiveIntronRegion 0 4.94 1.13 0.82 1.36 10.70 0.00 3.97 3.46 0.41 1.15 0.00 4.33 9.38 0.54 4.51 17.17 6.24 16.84 1.42 16.55 4.41 0.00 2.94 37 I1_SR13 SilentIntronRegion 0 5.97 1.20 0.42 0.38 3.09 4.16 4.35 2.68 0.52 2.28 1.86 3.22 8.30 1.79 6.47 5.68 5.37 16.94 4.00 9.27 1.95 0.00 1.17 38 I1_AR18 ActiveIntronRegion 0 10.45 4.30 1.94 3.59 7.50 0.59 5.30 2.53 4.12 1.61 1.10 5.71 17.37 1.96 7.74 9.18 5.05 9.01 1.88 5.27 0.98 0.20 1.59 39 I1_SR14 SilentIntronRegion 0 22.56 4.68 4.37 8.44 8.32 1.19 4.96 3.83 6.29 4.25 0.39 2.72 25.67 1.33 9.35 2.98 1.33 1.91 2.56 5.47 0.00 0.84 1.18 40 I1_AR19 ActiveIntronRegion 0 17.98 2.33 1.15 5.73 6.32 1.40 1.97 2.87 1.88 1.16 0.00 0.67 18.28 0.77 6.46 8.12 1.97 1.43 1.38 5.00 0.00 0.00 1.24 41 I1_AR20 ActiveIntronRegion 0 14.03 3.91 3.14 4.47 3.77 2.03 1.98 4.48 7.95 1.13 2.50 0.80 5.64 0.00 13.04 12.60 1.30 3.03 6.24 4.07 0.47 0.00 2.01 42 I1_SR15 SilentIntronRegion 0 26.01 4.11 2.69 7.05 11.64 1.43 3.65 4.86 4.97 4.67 0.25 2.79 11.60 0.14 10.39 4.30 1.74 2.25 1.26 2.24 0.04 1.20 2.32 43 I1_AR21 ActiveIntronRegion 0 21.89 5.37 3.10 4.25 7.66 0.82 4.86 3.91 6.63 3.19 0.60 1.04 19.62 1.43 8.56 8.66 3.26 8.49 2.70 4.11 1.39 1.18 1.21 44 I1_SR16 SilentIntronRegion 0 20.21 9.21 4.31 3.80 12.69 0.49 5.36 4.15 4.04 2.22 1.15 3.66 17.26 1.35 10.87 8.31 2.83 6.89 1.99 5.40 0.36 1.47 1.24 45 I1_SR17 SilentIntronRegion 0 121.48 6.86 4.76 7.83 22.76 0.91 5.64 6.60 10.49 3.11 0.50 3.03 20.26 1.28 13.60 5.28 2.45 2.57 1.58 1.26 0.00 0.52 2.18 46 I1_AR23 ActiveIntronRegion 1 104.11 4.02 9.91 8.62 23.22 1.18 5.95 11.54 14.85 3.61 1.66 7.86 20.19 0.82 27.08 8.26 1.07 10.84 3.08 2.89 0.94 2.02 2.21 47 I1_SR18 SilentIntronRegion 0 10.71 3.30 2.39 3.04 6.12 0.82 4.89 3.64 4.31 2.00 0.69 4.29 15.51 0.79 6.53 3.53 2.67 3.26 1.06 4.93 0.36 0.99 1.05 48 I1_AR29 ActiveIntronRegion 0 11.79 8.27 2.19 3.27 3.15 0.00 5.99 3.12 1.75 2.93 0.51 3.85 13.98 0.54 4.88 1.09 3.32 0.77 0.30 3.76 0.00 0.00 0.59 49 I1_SR23 SilentIntronRegion 0 14.00 3.04 0.50 1.49 4.97 0.61 4.92 2.83 2.41 0.62 0.29 3.97 8.55 0.50 4.75 2.99 0.91 1.88 0.58 3.69 0.40 0.25 0.45 50 E2_Aa NovelBoundary 0 16.74 9.80 11.77 4.96 7.30 8.06 16.43 2.18 4.89 8.43 2.68 0.00 6.66 14.77 14.09 0.00 3.93 21.97 0.00 30.74 0.00 0.00 0.00 51 ER2a ExonRegion 0 20.25 8.90 14.08 7.41 12.35 10.40 12.43 8.80 12.34 8.45 31.66 12.63 27.39 42.03 114.31 24.62 18.21 15.00 3.33 10.68 6.60 14.89 8.71 52 E2_Da NovelBoundary 0 15.34 0.00 3.49 7.16 15.96 0.00 15.10 0.00 1.13 3.60 7.95 0.00 6.33 12.13 6.30 3.76 0.00 8.42 0.00 12.34 0.00 0.00 0.00 53 E2a_E3a KnownJunction 0 46.08 3.09 10.79 8.86 3.31 0.00 0.00 4.27 23.58 8.68 25.69 0.00 31.49 41.09 141.17 31.70 24.31 2.40 0.00 0.00 5.81 13.47 19.46 54 I2 Intron 0 4.95 4.71 6.90 2.27 3.26 2.01 8.50 3.30 2.54 3.75 4.20 4.09 3.14 12.69 3.48 5.98 6.71 40.51 4.14 13.27 0.40 0.08 1.61 55 I2_AR1 ActiveIntronRegion 0 3.12 7.03 7.46 2.91 3.32 3.59 11.45 5.47 3.38 4.54 5.68 7.61 3.65 15.18 7.18 10.82 12.88 40.79 5.67 17.97 1.82 0.00 1.03 56 I2_SR2 SilentIntronRegion 0 5.01 4.26 7.05 2.40 3.57 1.99 8.48 3.41 2.55 3.67 4.32 3.78 3.19 13.19 3.12 5.95 6.66 44.53 4.17 13.77 0.36 0.10 1.88 57 E3_Aa NovelBoundary 0 3.41 6.12 1.71 0.00 0.00 0.00 4.06 5.09 1.36 3.12 0.00 0.00 0.00 14.83 9.39 7.26 14.21 35.36 0.00 6.26 0.00 0.00 0.00 58 ER3a ExonRegion 0 25.63 3.70 16.23 8.04 9.18 4.17 7.72 9.06 15.50 14.29 46.98 5.39 44.32 40.87 117.38 25.15 35.25 19.87 3.96 16.92 10.94 13.12 13.92 59 E3_Da NovelBoundary 0 3.33 5.92 9.25 1.90 3.40 0.00 0.00 9.08 0.00 5.53 9.32 0.00 13.64 16.95 4.57 4.36 4.77 33.16 0.00 13.68 3.15 0.00 0.00 60 E3a_E4a KnownJunction 0 26.52 3.09 15.11 7.46 21.14 11.92 12.19 8.21 11.66 6.98 46.59 12.90 53.57 19.84 125.47 32.47 45.35 3.98 0.00 0.00 11.74 19.96 19.12 61 I3 Intron 0 5.37 2.72 2.22 1.53 2.94 0.70 6.88 2.08 2.70 1.51 2.30 6.15 18.38 4.26 4.32 3.80 4.91 9.80 1.81 10.01 0.52 0.79 1.08 62 I3_AR1 ActiveIntronRegion 0 10.03 3.11 2.66 2.83 3.77 1.89 6.99 5.43 1.89 1.85 1.64 10.66 14.09 13.85 9.12 7.48 7.85 30.43 4.74 13.46 0.57 0.95 2.69 63 I3_SR1 SilentIntronRegion 0 6.11 3.24 2.51 1.71 3.04 0.72 8.65 3.24 3.69 1.97 2.71 6.15 20.57 6.03 4.94 5.26 6.19 10.90 2.07 9.14 0.68 0.51 1.26 64 I3_AR2 ActiveIntronRegion 0 4.21 2.17 3.29 1.68 2.72 0.36 9.48 2.10 2.74 1.06 2.92 3.69 24.38 4.43 5.13 1.29 5.48 13.20 1.26 11.38 0.75 0.26 1.45 65 I3_AR3 ActiveIntronRegion 0 6.70 1.45 2.40 1.14 3.68 0.73 7.43 1.96 1.21 1.80 7.20 8.46 19.05 4.70 5.64 3.60 3.52 5.22 1.60 9.15 0.00 0.44 1.70 66 I3_SR3 SilentIntronRegion 0 4.23 2.16 1.74 1.43 2.48 0.60 5.68 1.29 2.18 1.33 1.88 6.05 16.11 3.18 3.23 3.05 4.12 7.64 1.28 8.79 0.44 0.78 1.05 67 I3_AR4 ActiveIntronRegion 1 5.49 2.05 1.56 0.99 2.29 1.37 3.94 0.90 3.10 1.80 1.39 6.80 47.98 3.53 3.65 3.67 6.95 8.01 0.82 13.19 0.00 2.87 0.56 68 E4_Aa NovelBoundary 0 19.93 5.26 4.94 0.00 0.00 0.00 10.64 4.60 1.45 3.98 0.00 0.00 6.17 6.83 9.39 0.00 0.00 16.87 4.14 16.49 0.00 3.12 4.27 69 ER4a ExonRegion 0 28.90 4.90 12.56 7.14 13.72 7.40 8.36 8.81 14.69 11.64 33.68 8.91 67.72 36.50 119.71 26.01 27.62 16.34 1.55 8.78 10.30 16.23 11.01 70 E4_Da NovelBoundary 0 0.00 3.35 7.27 1.53 0.00 2.90 0.00 0.00 1.65 0.00 0.00 0.00 19.97 2.59 4.45 4.36 0.00 12.89 0.00 14.06 0.00 0.00 3.59 71 E4a_E5a KnownJunction 0 51.64 6.25 2.69 8.32 19.10 2.84 3.80 12.77 22.31 12.71 44.85 6.30 93.34 29.20 124.24 34.78 22.25 0.00 0.00 0.00 25.39 20.51 4.35 72 I4 Intron 0 8.96 7.96 6.56 2.19 5.62 0.84 7.57 2.96 2.76 2.00 2.24 3.92 11.54 3.05 6.53 3.60 3.66 22.93 3.20 14.14 0.73 1.40 1.61 73 I4_SR1 SilentIntronRegion 0 8.96 7.96 6.56 2.19 5.62 0.84 7.57 2.96 2.76 2.00 2.24 3.92 11.54 3.06 6.54 3.60 3.66 22.94 3.20 14.14 0.73 1.40 1.61 74 E5_Aa NovelBoundary 0 26.08 10.72 6.00 0.00 11.63 5.45 12.37 3.82 9.43 3.33 2.37 0.00 12.99 4.59 10.75 13.07 0.00 26.16 4.61 19.11 0.00 0.00 0.00 75 ER5a ExonRegion 0 38.09 8.68 7.04 3.61 11.35 3.90 5.98 5.39 7.46 5.60 7.36 8.45 31.24 9.54 36.75 8.05 8.14 8.89 3.16 7.23 2.43 6.38 2.60 76 IG41 Intergenic 0 2.54 7.13 5.79 2.45 2.55 0.76 8.16 1.03 1.50 1.82 2.07 2.49 1.92 2.79 2.38 2.53 2.75 18.83 4.40 12.93 0.04 0.09 0.78 77 IG41_SR7 SilentIntergenicRegion 0 6.09 12.12 13.78 5.00 4.16 0.71 8.21 1.64 2.92 2.82 1.52 3.09 3.18 2.62 4.21 3.16 2.14 26.27 5.51 14.41 0.04 0.14 0.88 78 IG41_AR6 ActiveIntergenicRegion 0 1.84 5.86 4.52 2.58 2.13 0.52 4.46 0.82 1.51 1.50 1.91 0.93 0.00 4.19 1.56 3.56 3.60 26.12 4.36 12.35 0.00 0.00 1.65 79 IG41_SR6 SilentIntergenicRegion 0 2.20 6.02 5.66 2.26 2.75 0.80 7.03 1.11 2.24 1.28 3.28 3.87 2.31 4.72 4.23 3.81 4.59 37.66 7.79 16.90 0.16 0.15 1.14 80 IG41_AR5 ActiveIntergenicRegion 0 1.50 3.74 3.75 2.06 1.48 0.84 6.16 0.41 0.84 1.08 3.01 1.38 1.02 4.17 1.80 3.06 1.69 16.10 3.47 10.20 0.00 0.22 0.54 81 IG41_AR4 ActiveIntergenicRegion 0 0.29 6.47 2.09 1.12 2.59 2.29 7.22 0.95 0.89 2.60 2.21 1.48 1.60 0.87 0.00 1.23 3.65 19.15 3.24 16.31 0.00 0.00 0.00 82 IG41_AR3 ActiveIntergenicRegion 0 0.00 19.06 2.45 0.00 0.00 0.00 5.96 0.00 1.24 0.00 1.93 0.00 0.00 4.87 0.73 0.00 5.78 6.93 0.00 11.17 0.00 0.00 2.94 83 IG41_SR3 SilentIntergenicRegion 0 0.00 16.61 2.45 0.00 0.00 0.00 6.62 0.00 1.24 0.00 1.93 0.00 0.00 4.87 0.00 0.00 6.60 7.08 0.00 12.77 0.00 0.00 2.45 84 IG41_AR2 ActiveIntergenicRegion 0 0.00 17.49 3.12 0.00 0.00 0.00 7.41 1.47 1.24 0.00 1.64 6.93 0.00 3.90 0.00 0.00 4.79 3.79 0.00 13.09 0.00 0.00 0.00 85 IG41_SR2 SilentIntergenicRegion 0 0.00 16.52 3.68 0.00 0.00 0.00 5.96 1.73 1.24 0.00 0.97 10.82 0.00 1.42 0.00 0.00 6.60 3.70 0.00 15.43 0.00 0.00 0.00