Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SHROOM1 Gene 0 4.42 7.56 59.77 19.38 10.58 11.80 8.73 32.29 43.91 39.34 6.74 1.33 3.18 9.12 4.16 1.93 17.22 26.12 4.77 12.46 43.39 26.81 42.76 2 355404 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 440998 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 378679 Transcript 0 0.00 0.00 0.00 1.36 0.00 0.00 1.32 0.00 0.00 1.15 0.00 0.00 0.00 3.25 0.00 0.00 0.00 0.92 0.00 0.00 0.00 1.04 2.94 5 440118 Transcript 0 0.00 3.09 3.31 5.39 0.00 10.33 3.62 6.08 4.80 7.52 2.68 0.00 0.00 2.12 0.00 0.00 8.13 3.98 0.00 0.00 0.00 0.00 3.50 6 319854 Transcript 0 0.02 3.40 21.00 8.26 6.56 2.57 1.49 12.70 9.20 7.20 3.28 0.00 2.07 1.86 1.68 0.00 5.52 11.59 0.00 6.18 9.39 6.58 10.97 7 378676 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 495680 Transcript 0 0.00 0.00 0.00 6.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.72 0.00 3.24 9 488072 Transcript 0 0.00 1.69 3.21 1.04 0.06 0.48 0.41 2.88 3.68 2.95 0.32 0.00 0.11 0.35 0.21 0.00 2.59 2.16 0.08 1.93 4.25 2.38 7.90 10 ER1a ExonRegion 0 0.72 0.00 4.90 1.79 1.14 2.52 0.87 1.25 1.77 1.68 0.41 0.00 0.00 0.43 0.00 0.05 2.37 3.47 0.17 0.33 3.73 2.70 4.32 11 E1_Ab KnownBoundary 0 3.78 0.00 8.10 2.73 0.00 6.93 0.00 8.05 5.58 9.83 0.00 0.00 0.00 4.71 5.44 0.00 9.07 9.37 4.05 6.01 8.03 10.41 30.47 12 ER1b ExonRegion 0 0.65 0.00 5.75 3.65 0.00 3.50 1.45 4.04 5.15 6.16 0.71 0.00 0.36 3.67 1.21 2.24 10.82 6.62 4.36 3.86 10.54 8.11 13.60 13 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 E1a_E3c KnownJunction 0 0.00 3.09 3.31 5.39 0.00 10.33 3.62 6.08 4.80 7.52 2.68 0.00 0.00 2.12 0.00 0.00 8.13 3.98 0.00 0.00 0.00 0.00 3.50 15 I1 Intron 0 5.57 5.75 24.99 13.96 9.51 7.92 7.58 16.02 28.78 23.42 5.60 1.61 2.84 5.20 2.14 1.11 8.86 18.67 1.47 7.79 30.58 24.14 47.54 16 I1_AR2 ActiveIntronRegion 0 5.59 5.77 25.11 14.03 9.56 7.96 7.61 16.10 28.92 23.53 5.63 1.62 2.85 5.22 2.15 1.11 8.90 18.77 1.48 7.83 30.72 24.26 47.77 17 E2_Aa NovelBoundary 0 12.15 2.63 20.55 29.33 8.32 8.18 20.40 37.25 22.40 13.86 0.00 5.85 5.84 8.24 4.33 15.55 25.06 26.53 0.00 8.50 8.83 23.21 41.23 18 ER2a ExonRegion 0 15.43 4.95 11.17 15.29 7.43 10.12 11.03 8.92 12.83 7.93 7.39 2.47 9.22 4.60 9.06 8.21 11.34 12.26 3.32 8.83 12.29 5.02 10.15 19 E2_Da NovelBoundary 0 167.14 131.69 160.91 203.37 147.37 90.69 209.07 211.61 189.00 142.99 95.92 69.32 90.58 36.79 54.39 220.63 202.06 202.38 176.01 177.11 194.10 82.48 208.80 20 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 21 E2a_E3c NovelJunction 0 0.00 0.00 19.40 1.47 3.57 7.84 0.00 12.28 18.89 14.29 0.00 0.00 0.00 2.71 5.69 0.00 4.68 8.91 7.62 2.62 27.86 15.92 38.24 22 I2 Intron 0 1.35 2.28 14.89 6.49 3.42 4.98 6.14 5.35 9.71 7.38 2.16 1.18 0.00 2.80 2.24 0.48 3.69 6.90 1.02 4.08 7.40 9.66 15.49 23 I2_SR1 SilentIntronRegion 0 1.36 2.28 14.94 6.51 3.43 5.00 6.16 5.37 9.74 7.40 2.17 1.18 0.00 2.80 2.24 0.48 3.71 6.93 1.02 4.09 7.42 9.69 15.54 24 E3_Aa NovelBoundary 0 7.11 7.89 35.72 15.08 17.32 7.89 12.01 24.11 24.42 21.44 0.00 0.00 13.64 4.94 4.33 0.00 7.67 19.36 0.00 14.38 20.26 19.47 19.80 25 ER3a ExonRegion 0 1.42 3.17 35.69 10.39 3.86 7.90 4.18 14.65 16.58 12.34 4.54 0.00 0.98 3.71 1.44 0.00 7.16 16.36 3.51 6.41 17.00 11.63 25.70 26 E3_Ab KnownBoundary 0 3.41 3.29 45.24 12.32 0.00 2.90 5.39 2.26 9.69 25.65 6.90 0.00 12.34 7.36 6.30 3.76 7.01 19.73 0.00 8.37 16.56 17.15 47.63 27 ER3b ExonRegion 0 2.63 2.59 30.11 8.01 2.59 4.22 3.05 5.92 10.11 13.38 4.63 0.00 12.08 5.41 1.85 0.00 4.30 14.89 0.00 8.12 12.02 14.21 32.84 28 E3_Da KnownBoundary 0 0.00 3.09 20.25 7.66 8.15 8.63 0.00 9.45 15.65 18.00 2.68 0.00 0.00 0.00 0.00 0.00 0.00 11.48 0.00 0.00 13.53 4.96 14.08 29 E3a_E3c KnownJunction 0 3.78 0.00 18.15 2.86 0.00 0.00 3.44 2.18 3.33 6.15 2.63 0.00 6.82 4.94 0.00 0.00 12.62 8.46 0.00 9.01 2.72 14.63 15.02 30 ER3c ExonRegion 0 0.02 3.40 21.00 8.26 6.56 2.57 1.49 12.70 9.20 7.20 3.28 0.00 2.07 1.86 1.68 0.00 5.52 11.59 0.00 6.18 9.39 6.58 10.97 31 E3_Ac KnownBoundary 0 0.00 6.51 23.71 4.13 14.94 5.74 2.08 4.52 4.98 7.84 2.68 0.00 0.00 4.59 0.00 0.00 0.00 11.11 0.00 8.88 5.75 0.00 7.43 32 ER3d ExonRegion 0 1.36 1.36 44.05 10.94 3.06 5.50 7.75 22.22 17.94 20.54 4.33 0.00 7.04 11.25 5.04 2.97 28.45 15.62 0.00 8.92 31.06 16.12 40.34 33 E3_Ad KnownBoundary 0 0.00 0.00 55.82 16.95 0.00 4.37 12.06 37.95 27.84 30.70 7.32 0.00 0.00 13.83 4.70 3.50 34.13 19.90 0.00 6.14 45.16 16.35 39.69 34 ER3e ExonRegion 0 1.54 4.44 43.13 11.51 5.99 7.94 4.91 26.02 33.59 40.96 7.64 1.25 2.22 10.04 3.39 0.96 21.25 24.73 4.10 10.38 47.51 22.78 36.04 35 E3_Db NovelBoundary 0 2.82 7.24 102.51 35.46 6.28 7.38 1.55 35.73 63.31 53.64 0.00 11.10 0.00 2.24 0.00 0.00 15.90 33.62 11.20 9.52 34.60 21.06 9.48 36 E3_Dc NovelBoundary 0 0.00 6.45 5.88 8.46 0.00 5.22 0.00 9.45 8.30 2.42 5.05 0.00 6.49 0.00 0.00 0.00 13.09 12.56 0.00 5.75 5.93 2.45 0.00 37 E3c_E4a KnownJunction 0 16.08 9.67 214.89 72.62 15.87 20.33 4.02 101.86 156.10 112.04 20.22 11.40 0.00 9.71 4.45 0.00 37.59 100.77 25.69 56.12 115.46 111.87 97.31 38 ER3f ExonRegion 0 7.76 10.17 173.19 72.46 21.85 21.39 2.65 71.44 139.16 111.63 17.07 12.27 0.00 9.74 2.90 0.00 33.01 95.47 31.85 49.29 108.72 93.06 88.10 39 I3 Intron 0 2.43 1.17 6.28 2.33 4.60 3.15 1.52 2.95 3.16 4.90 0.00 0.00 0.00 3.07 3.52 0.00 11.35 0.00 0.00 7.32 7.58 10.75 5.05 40 I3_AR1 ActiveIntronRegion 0 2.68 1.63 6.43 2.18 4.28 4.52 2.00 3.11 3.27 4.84 0.00 0.00 0.00 4.48 3.80 0.00 16.80 0.00 0.00 7.56 6.95 10.28 5.68 41 I3_AR2 ActiveIntronRegion 0 3.44 2.03 7.35 2.73 8.03 5.50 2.65 3.46 3.71 5.73 0.00 0.00 0.00 2.64 5.44 0.00 19.81 0.00 0.00 12.23 13.22 18.75 8.81 42 I3_AR3 ActiveIntronRegion 0 1.92 0.32 6.05 2.56 4.26 0.69 0.58 2.75 3.05 5.02 0.00 0.00 0.00 1.37 2.81 0.00 1.75 0.00 0.00 5.98 7.16 9.64 3.30 43 E4_Aa NovelBoundary 0 0.00 0.00 18.89 10.09 0.00 4.94 2.16 17.95 21.04 18.19 2.63 0.00 7.30 0.00 0.00 4.36 16.27 8.17 0.00 3.26 17.85 4.90 22.96 44 ER4a ExonRegion 0 16.89 15.98 193.72 76.22 30.48 31.44 11.16 82.72 141.27 133.92 15.50 1.08 0.00 27.12 7.30 0.00 38.14 77.08 20.70 41.53 107.67 104.18 139.91 45 E4_Da NovelBoundary 0 0.00 9.14 17.15 15.75 7.39 2.61 10.20 14.01 15.45 16.90 1.95 0.00 0.00 0.00 5.69 3.85 0.00 10.40 4.71 6.01 3.15 10.23 11.69 46 E4a_E5a KnownJunction 0 27.93 23.88 196.44 80.44 32.43 18.74 10.25 81.74 114.78 149.00 24.53 0.00 0.00 14.60 4.45 0.00 21.51 55.71 8.85 22.24 99.71 93.14 130.86 47 E4a_E6a KnownJunction 0 0.00 0.00 1.33 1.76 0.00 2.78 0.00 19.63 29.20 9.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 3.09 5.82 0.00 48 E5_Aa NovelBoundary 0 0.00 6.71 8.25 10.39 8.57 0.00 1.94 21.44 9.81 5.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.49 4.80 0.00 2.41 0.00 4.35 49 ER5a ExonRegion 0 9.77 22.79 143.40 66.23 30.72 32.75 22.36 76.22 103.32 103.38 13.32 0.88 7.22 12.01 4.94 0.74 28.46 54.97 11.78 31.23 108.90 75.83 106.36 50 E5_Da NovelBoundary 0 0.00 0.00 1.33 2.63 7.72 2.90 1.63 19.18 11.52 4.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.36 3.67 8.56 2.78 0.00 0.00 51 E5a_E6a KnownJunction 0 3.33 14.60 107.45 60.33 7.39 10.96 12.37 67.57 104.57 81.66 2.16 0.00 6.82 7.06 4.45 0.00 25.99 56.21 4.33 16.75 93.04 77.77 152.20 52 ER5b ExonRegion 0 2.12 12.20 90.68 49.06 10.70 3.67 10.59 60.50 85.22 72.25 5.80 0.00 9.38 9.74 8.70 0.00 19.81 55.43 9.56 17.02 88.15 83.34 140.96 53 E6_Aa NovelBoundary 0 3.78 3.35 4.61 2.06 8.32 2.78 6.67 21.65 0.00 4.27 2.16 0.00 0.00 0.00 0.00 0.00 0.00 9.53 4.80 2.43 2.84 0.00 4.35 54 ER6a ExonRegion 0 5.22 11.86 135.41 51.15 17.48 12.89 17.42 88.57 117.86 99.37 11.01 0.00 7.09 13.20 5.36 1.45 41.04 47.63 8.80 25.56 103.61 76.45 97.56 55 E6_Da KnownBoundary 0 17.48 15.66 153.78 43.35 26.49 9.77 20.14 70.77 106.16 98.64 16.43 0.00 11.69 2.18 4.45 7.86 21.69 34.45 12.52 23.46 108.05 78.56 71.79 56 E6a_E6b KnownJunction 0 0.00 0.00 0.00 6.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.72 0.00 3.24 57 ER6b ExonRegion 0 24.18 23.07 171.09 61.10 46.65 40.40 24.25 98.93 144.06 118.09 16.96 1.80 7.99 12.41 4.88 1.00 48.08 52.78 14.29 30.25 115.18 107.70 141.57 58 E6_Ab KnownBoundary 0 0.00 17.69 141.45 48.05 35.91 10.56 13.43 61.36 85.39 73.84 17.21 0.00 6.82 11.07 6.30 0.00 17.20 40.87 3.95 14.25 75.80 50.95 36.02 59 ER6c ExonRegion 0 4.23 11.55 129.84 40.39 16.47 18.21 14.91 58.50 81.76 71.86 8.69 3.68 3.76 10.89 4.01 1.08 16.41 52.16 4.34 16.30 81.88 44.54 74.56 60 E6_Db KnownBoundary 0 6.08 14.08 133.17 54.61 27.08 34.07 12.76 51.51 92.30 74.81 10.16 0.00 6.33 11.95 8.90 0.00 4.68 65.33 0.00 11.63 38.80 49.91 77.08 61 ER6d ExonRegion 0 3.65 7.43 96.38 31.46 14.33 18.30 12.92 48.83 67.01 58.71 10.23 0.00 2.48 12.93 6.17 0.80 17.50 47.19 2.16 11.69 68.86 36.90 65.99 62 E6c_E7b KnownJunction 0 0.00 12.83 84.21 30.67 12.31 0.00 26.54 44.81 41.81 56.01 12.32 0.00 6.82 12.13 15.20 0.00 8.42 55.09 9.04 6.20 82.16 19.41 72.39 63 ER7a ExonRegion 0 0.00 1.69 3.21 1.04 0.06 0.48 0.41 2.88 3.68 2.95 0.32 0.00 0.11 0.35 0.21 0.00 2.59 2.16 0.08 1.93 4.25 2.38 7.90 64 E7_Ab KnownBoundary 0 0.00 3.35 2.99 1.33 0.00 2.21 0.00 11.25 10.62 4.86 0.00 0.00 0.00 0.00 0.00 0.00 4.49 4.44 0.00 5.69 5.37 5.63 11.35 65 ER7b ExonRegion 0 3.65 6.01 86.43 22.92 7.89 18.04 9.68 41.53 53.43 43.83 5.70 0.00 0.70 13.63 4.63 1.08 20.37 30.31 2.01 16.99 51.84 30.47 50.40 66 E7a_E8a KnownJunction 0 2.96 8.81 57.30 28.47 4.07 30.49 7.91 64.65 56.34 32.31 2.53 0.00 0.00 4.89 5.32 0.00 20.66 22.59 4.24 12.02 40.16 29.94 55.74 67 ER8a ExonRegion 0 1.46 2.81 72.23 12.96 6.88 7.96 5.11 32.37 47.37 33.66 6.02 0.00 0.00 7.56 3.76 0.00 11.54 25.37 1.51 12.91 36.22 19.85 31.04 68 E8_Da KnownBoundary 0 0.00 10.00 98.31 15.52 3.99 7.44 6.23 26.25 52.49 35.35 7.90 0.00 0.00 22.54 4.45 0.00 21.13 42.90 4.61 8.76 30.33 29.45 40.38 69 ER8b ExonRegion 0 0.00 4.25 70.51 10.20 0.08 7.11 4.89 16.18 35.93 26.00 5.68 0.00 0.00 11.07 1.14 0.00 16.50 31.41 2.41 5.42 38.46 22.79 28.03 70 E8b_E9a KnownJunction 0 3.19 9.01 83.32 15.02 0.00 9.48 6.62 25.18 31.83 30.46 2.58 0.00 0.00 2.47 0.00 0.00 12.25 18.90 0.00 2.94 44.79 20.15 35.17 71 E8b_E9b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.53 1.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 72 E9_Ab NovelBoundary 0 3.56 2.76 29.06 12.29 0.00 18.00 1.94 13.68 15.05 17.16 0.00 0.00 0.00 11.71 0.00 0.00 0.00 14.38 0.00 0.00 14.27 13.23 22.11 73 ER9a ExonRegion 0 0.00 4.96 60.27 12.78 0.00 10.32 3.89 16.85 22.93 21.86 1.93 0.00 0.00 9.14 1.81 0.00 8.46 18.02 0.00 2.39 35.12 19.92 33.95 74 ER9b ExonRegion 0 2.72 4.38 70.50 11.55 7.04 12.54 5.13 33.72 42.55 38.28 5.33 0.00 0.00 10.38 3.35 0.00 10.18 37.54 1.56 10.48 37.18 13.41 38.84 75 E9_Da KnownBoundary 0 0.00 3.03 69.51 17.41 19.19 26.01 4.06 44.52 61.83 61.25 0.00 0.00 0.00 12.01 4.45 0.00 7.20 30.14 0.00 13.93 47.69 17.51 48.66 76 ER9c ExonRegion 0 8.19 15.26 27.60 10.71 13.67 11.21 16.41 18.88 30.51 17.17 5.15 4.92 8.20 10.41 9.31 9.23 18.20 12.44 9.74 15.89 22.40 12.76 28.77 77 E9_Db KnownBoundary 0 6.74 2.96 73.95 36.23 3.90 10.90 17.58 73.07 59.98 35.30 10.48 12.30 6.17 41.03 0.00 0.00 14.31 6.72 4.42 3.26 50.41 70.05 41.40 78 ER9d ExonRegion 0 4.16 10.70 33.13 16.89 16.96 8.11 5.01 32.49 37.86 21.88 3.95 3.28 1.30 9.09 1.18 1.71 7.94 2.95 4.05 0.99 17.72 27.77 26.18 79 ER9e ExonRegion 0 0.00 0.00 0.00 1.36 0.00 0.00 1.32 0.00 0.00 1.15 0.00 0.00 0.00 3.25 0.00 0.00 0.00 0.92 0.00 0.00 0.00 1.04 2.94