Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ERAP2 Gene 0 184.78 5.32 17.36 22.90 43.15 39.95 28.71 49.31 56.18 4.34 319.25 455.74 575.80 508.23 285.99 305.96 344.45 3.01 1.50 5.00 89.55 85.36 105.21 2 414384 Transcript 0 4.00 3.46 0.00 0.91 22.50 0.00 0.93 0.06 3.71 2.55 13.82 32.71 20.67 11.49 11.28 11.67 15.04 0.89 1.42 4.89 2.04 0.77 0.00 3 343361 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.69 0.00 0.00 4.65 4.82 0.00 0.00 0.00 0.00 0.00 3.15 0.00 0.00 4 379904 Transcript 0 6.82 0.00 0.00 3.30 0.00 0.00 0.00 0.00 7.73 0.00 9.27 30.01 0.00 18.84 9.52 15.38 20.66 0.00 0.00 0.00 2.53 2.51 11.35 5 437043 Transcript 1 24.15 3.70 0.67 3.04 6.20 3.58 4.93 3.93 3.42 0.00 1.05 28.73 39.44 8.79 17.41 0.14 3.00 0.00 2.03 1.26 0.00 1.04 1.33 6 ER1a ExonRegion 0 3.75 0.00 0.00 0.45 0.00 1.10 0.79 0.00 1.78 0.00 15.93 0.00 0.00 6.56 6.19 3.05 12.15 1.28 0.00 0.00 4.50 1.11 5.99 7 E1_Ab KnownBoundary 0 5.93 0.00 0.00 1.83 0.00 0.00 1.68 0.00 1.79 0.00 30.11 0.00 0.00 14.42 8.90 7.60 26.74 2.57 0.00 0.00 0.00 2.63 0.00 8 ER1b ExonRegion 0 2.03 0.00 0.00 1.11 0.00 0.22 0.68 1.59 1.93 0.00 21.80 0.11 0.00 8.46 1.87 2.11 17.85 2.72 0.00 1.43 4.70 0.66 0.04 9 E1_Da KnownBoundary 0 0.00 0.00 0.00 1.40 0.00 0.00 2.25 1.56 0.00 0.00 7.16 0.00 0.00 0.00 0.00 4.36 17.58 1.78 0.00 0.00 2.84 0.00 0.00 10 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.69 0.00 0.00 4.65 4.82 0.00 0.00 0.00 0.00 0.00 3.15 0.00 0.00 11 ER1c ExonRegion 0 7.19 0.47 0.12 0.74 0.14 2.45 3.38 1.27 4.87 0.89 30.32 10.80 7.59 29.91 13.22 23.55 28.57 0.59 0.00 0.74 4.03 8.64 13.50 12 E1b_E2a KnownJunction 0 297.09 0.00 4.02 9.29 3.65 72.86 76.84 17.62 52.46 1.67 526.08 202.27 268.65 682.21 421.29 758.18 578.96 0.00 0.00 0.00 75.18 228.46 345.72 13 ER2a ExonRegion 0 52.35 2.08 5.79 8.93 13.34 27.46 20.30 22.50 56.22 2.86 398.58 451.62 496.81 568.92 174.53 375.61 477.14 0.81 0.00 0.47 144.14 103.48 142.00 14 E2a_E3a KnownJunction 1 52.16 6.71 8.31 11.32 16.38 53.44 50.39 24.15 57.84 1.48 515.92 651.21 909.36 695.34 186.79 495.34 679.38 0.00 0.00 0.00 223.02 123.75 178.84 15 ER3a ExonRegion 0 43.97 4.04 6.30 13.52 22.71 20.55 23.87 26.04 52.90 2.54 464.19 585.19 709.61 731.85 209.02 466.20 518.34 1.69 0.00 0.00 150.44 95.21 144.30 16 E3a_E4a KnownJunction 0 56.97 3.29 10.17 17.71 11.97 19.42 20.93 35.90 50.40 2.71 608.63 530.42 619.60 757.43 218.93 487.14 621.32 0.00 0.00 0.00 143.69 103.30 124.97 17 E3a_E5a KnownJunction 0 6.82 0.00 0.00 3.30 0.00 0.00 0.00 0.00 7.73 0.00 9.27 30.01 0.00 18.84 9.52 15.38 20.66 0.00 0.00 0.00 2.53 2.51 11.35 18 ER4a ExonRegion 1 54.84 1.25 4.97 11.75 9.43 31.09 16.46 25.81 52.28 3.81 501.95 535.89 858.66 635.99 170.85 411.25 560.35 1.04 0.00 0.00 123.82 78.96 132.58 19 E4a_E5a KnownJunction 0 127.28 0.00 5.26 16.65 11.54 82.51 25.48 25.47 56.13 3.06 518.03 534.92 1201.87 949.38 356.27 546.27 584.10 0.00 0.00 0.00 110.15 120.02 143.75 20 ER5a ExonRegion 0 84.10 3.53 8.63 13.10 17.09 31.75 28.63 25.43 48.43 3.14 484.44 588.45 712.57 752.38 213.40 471.73 542.44 0.00 0.00 0.62 134.46 107.81 144.41 21 E5a_E6a KnownJunction 0 93.42 6.31 1.48 8.79 29.12 59.51 18.86 18.89 48.00 1.50 452.90 553.23 872.51 825.07 239.57 395.88 442.26 0.00 0.00 3.00 120.96 89.71 151.95 22 ER6a ExonRegion 0 45.89 1.26 7.30 11.37 13.60 27.98 13.27 27.21 42.46 2.43 371.45 530.18 751.31 751.81 210.74 451.38 410.38 0.61 0.00 1.13 127.80 86.47 160.04 23 E6a_E7a KnownJunction 1 38.60 0.00 4.82 12.95 7.72 21.41 15.37 19.30 60.68 0.00 341.72 375.57 409.39 808.82 199.15 426.21 439.83 0.00 0.00 2.94 137.76 106.73 193.09 24 ER7a ExonRegion 0 53.08 1.69 4.40 11.42 11.43 24.79 14.95 32.55 48.92 1.98 406.01 331.96 601.39 640.39 174.94 275.76 406.88 0.00 0.00 0.67 113.78 74.79 134.47 25 E7a_E8a KnownJunction 0 108.69 2.70 8.28 8.02 7.22 48.38 24.60 27.40 49.77 1.67 333.35 413.53 543.96 564.01 185.67 304.28 340.25 0.00 0.00 0.00 112.06 52.05 106.45 26 ER8a ExonRegion 0 107.22 2.43 10.09 10.58 20.55 53.28 22.84 32.15 52.78 0.29 409.10 522.19 891.92 656.00 190.19 347.87 415.49 1.78 0.00 0.82 80.87 86.86 138.76 27 E8a_E9a KnownJunction 0 76.46 0.00 17.71 13.52 12.31 49.18 6.23 23.86 41.00 0.00 296.13 622.25 843.94 467.42 188.52 204.56 302.66 0.00 0.00 0.00 50.41 84.75 84.51 28 ER9a ExonRegion 0 58.19 0.79 10.69 13.20 15.45 34.24 22.07 26.32 44.84 1.47 366.78 645.25 864.85 559.92 159.15 266.66 404.78 0.00 0.00 0.00 73.66 82.16 94.02 29 E9a_E10a KnownJunction 0 104.24 0.00 11.68 16.45 14.26 22.66 16.38 22.39 64.47 1.29 404.89 699.98 848.65 593.33 164.66 220.63 406.08 0.00 0.00 0.00 107.06 78.01 142.21 30 E9a_E11a NovelJunction 0 6.67 0.00 0.00 0.00 0.00 0.00 0.00 4.15 6.57 0.00 5.26 12.60 28.24 12.36 0.00 0.00 8.70 0.00 0.00 0.00 5.99 0.00 0.00 31 ER10a ExonRegion 0 78.25 5.84 8.10 13.35 17.02 28.57 22.26 30.14 51.79 5.07 397.45 738.33 671.69 571.48 172.14 326.68 402.90 1.71 1.80 4.38 124.27 73.26 113.42 32 E10_Da NovelBoundary 0 28.30 17.37 5.50 5.76 50.59 0.00 3.44 7.35 13.45 16.76 35.96 81.33 80.19 30.08 16.81 41.70 44.23 4.39 4.05 12.34 6.18 0.00 0.00 33 E10a_E11a KnownJunction 0 96.54 2.76 9.46 5.36 0.00 13.23 12.32 33.11 28.15 0.00 341.93 476.71 488.12 450.35 191.11 321.11 330.53 0.00 0.00 0.00 146.97 78.87 99.28 34 E10_Db NovelBoundary 0 21.71 0.00 5.09 3.76 25.13 8.69 4.46 8.91 6.05 3.33 23.95 76.07 73.37 85.53 45.37 51.52 106.78 2.57 4.42 3.26 8.90 5.88 7.43 35 ER10b ExonRegion 0 4.00 3.46 0.00 0.91 22.50 0.00 0.93 0.06 3.71 2.55 13.82 32.71 20.67 11.49 11.28 11.67 15.04 0.89 1.42 4.89 2.04 0.77 0.00 36 Ix_SR1 SilentIntronRegion 0 14.43 3.81 2.47 8.20 18.28 3.59 7.56 8.16 6.90 12.83 10.83 31.45 53.11 29.92 18.64 18.59 29.31 2.05 2.71 5.77 0.84 1.51 1.33 37 E11_Aa NovelBoundary 0 12.67 0.00 4.20 1.47 0.00 2.56 17.89 15.40 8.48 9.70 12.63 5.70 33.11 9.59 5.81 19.05 29.36 2.07 0.00 8.31 6.12 2.69 0.00 38 ER11a ExonRegion 0 90.51 5.95 10.73 16.61 20.77 37.86 18.10 30.65 49.42 6.91 330.15 584.18 543.27 624.37 182.53 375.23 426.08 6.87 0.00 3.69 148.36 83.20 118.10 39 E11a_E12a KnownJunction 0 107.06 0.00 20.82 17.01 20.63 58.38 28.93 42.06 51.62 0.00 308.87 612.20 441.69 624.47 243.90 458.77 450.77 0.00 0.00 0.00 121.89 76.91 130.95 40 ER12a ExonRegion 0 90.88 2.64 12.04 17.70 24.68 34.48 21.88 43.73 68.35 0.03 374.64 390.14 426.32 650.66 234.49 420.89 465.72 1.25 4.06 2.74 139.74 73.65 138.57 41 E12a_E13a KnownJunction 0 106.46 0.00 8.93 21.74 19.95 40.49 38.51 45.18 75.43 0.00 366.62 401.68 534.54 752.96 263.68 458.85 505.94 0.00 0.00 0.00 134.30 81.87 188.23 42 ER13a ExonRegion 0 80.85 3.88 14.94 22.76 23.62 26.14 16.69 57.24 79.29 3.14 468.23 489.09 577.43 756.71 323.82 478.32 571.41 2.55 0.88 2.99 164.39 114.45 189.46 43 E13a_E14a KnownJunction 0 120.17 11.91 12.83 21.41 11.71 19.87 9.54 78.45 55.24 5.13 366.94 573.64 641.19 632.12 239.82 342.65 470.97 0.00 0.00 0.00 150.80 108.87 160.31 44 Ix_AR1 ActiveIntronRegion 0 33.38 2.87 3.44 6.72 22.69 3.17 10.45 8.06 7.90 3.56 41.77 90.75 121.13 58.32 22.28 47.47 57.86 1.52 1.32 3.17 4.81 4.36 2.27 45 E14_Aa NovelBoundary 0 58.90 3.03 6.86 5.56 53.65 7.72 3.97 6.45 18.84 5.88 40.59 74.12 88.47 84.82 14.96 72.55 62.46 0.00 3.48 0.00 5.75 0.00 0.00 46 ER14a ExonRegion 0 173.14 2.77 18.99 19.72 36.63 41.03 35.81 58.25 64.84 7.47 467.34 660.26 687.13 809.56 355.63 533.43 553.79 4.18 0.00 2.02 191.78 112.82 179.49 47 E14a_E15a KnownJunction 0 244.93 0.00 26.37 14.88 29.12 40.20 10.16 50.52 57.61 5.13 476.65 652.71 562.46 919.42 319.80 437.58 515.29 0.00 0.00 0.00 200.47 100.67 144.69 48 E14a_E16a NovelJunction 0 12.97 0.00 0.00 0.00 0.00 0.00 0.00 2.05 3.59 0.00 5.11 0.00 0.00 16.25 0.00 7.52 35.90 0.00 0.00 0.00 0.00 0.00 0.00 49 ER15a ExonRegion 0 183.81 8.02 21.51 15.84 29.92 39.22 24.70 44.28 54.88 6.97 358.17 524.66 562.85 660.11 269.03 371.32 417.41 7.18 0.17 4.69 157.31 66.54 120.64 50 E15_Da NovelBoundary 0 52.60 2.63 4.67 3.20 17.32 0.00 9.14 12.57 17.39 12.14 72.81 50.42 28.41 99.54 61.31 70.92 51.99 0.00 0.00 6.39 14.21 3.12 15.62 51 E15a_E16a KnownJunction 0 176.03 12.89 17.09 15.82 35.14 23.57 25.17 36.10 44.47 1.18 330.40 304.75 675.61 763.91 412.39 363.84 395.04 2.57 0.00 0.00 138.01 93.14 126.76 52 Ix Intron 0 54.52 3.18 2.68 6.69 30.28 3.11 10.45 11.93 8.52 3.34 15.88 54.13 85.83 39.72 29.28 25.97 18.19 0.93 1.56 1.80 1.44 4.01 2.87 53 Ix_SR2 SilentIntronRegion 0 44.46 0.89 0.61 3.96 26.98 1.53 9.12 11.61 7.52 2.08 15.46 61.07 96.54 38.35 25.52 24.66 14.04 0.31 1.24 0.89 1.11 6.07 2.46 54 Ix_AR3 ActiveIntronRegion 0 78.76 6.07 4.13 13.38 34.87 3.87 11.30 12.04 10.85 3.71 14.94 51.62 75.25 43.26 34.42 28.90 19.43 2.08 2.08 1.60 1.66 4.13 3.54 55 Ix_SR4 SilentIntronRegion 0 66.62 4.60 5.75 7.42 43.47 5.31 13.50 17.19 8.81 5.59 12.17 59.01 105.82 39.28 30.11 20.19 13.72 0.47 0.80 1.34 1.67 2.62 2.22 56 E16_Aa NovelBoundary 1 98.02 8.29 15.08 20.18 43.38 2.44 24.16 22.02 21.44 7.01 22.27 88.23 305.01 99.12 50.68 40.84 26.27 0.00 12.99 3.20 2.72 2.45 8.02 57 ER16a ExonRegion 0 274.72 5.56 27.07 35.53 67.95 52.93 38.35 62.14 79.86 8.78 426.59 596.05 782.08 721.07 390.00 425.64 502.08 2.52 1.77 8.71 117.42 77.71 139.93 58 E16_Da NovelBoundary 0 16.60 6.71 5.53 25.37 4.16 8.63 17.53 8.42 9.09 5.61 0.00 24.76 20.29 5.18 4.45 0.00 7.48 0.00 0.00 8.25 0.00 0.00 0.00 59 E16a_E17a KnownJunction 0 342.88 0.00 31.96 46.41 89.73 71.10 31.66 75.78 74.13 6.63 507.92 756.70 806.60 726.47 472.09 476.88 563.91 0.00 0.00 0.00 107.37 119.65 120.28 60 ER17a ExonRegion 0 310.62 8.91 25.53 32.79 70.52 47.34 39.98 91.03 87.40 6.78 479.08 635.76 852.12 815.22 443.27 448.50 545.70 1.00 4.61 2.31 138.93 95.12 146.33 61 E17_Da NovelBoundary 0 48.60 2.70 11.24 15.78 60.53 8.52 15.15 10.06 21.47 1.21 56.96 132.19 108.76 55.09 38.69 54.86 45.72 5.39 0.00 8.88 6.12 0.00 0.00 62 E17a_E18a KnownJunction 0 288.42 0.00 35.10 57.87 21.73 33.33 21.51 84.78 96.03 5.56 413.68 809.21 773.98 702.52 354.66 353.24 524.54 0.00 0.00 0.00 106.38 87.14 79.13 63 Ix Intron 0 38.80 5.85 5.82 10.55 27.05 3.57 12.32 13.46 12.24 4.76 28.51 44.22 85.43 45.71 28.29 43.09 36.73 3.38 2.56 6.58 3.34 4.32 2.90 64 Ix_SR1 SilentIntronRegion 0 38.85 5.86 5.82 10.56 27.08 3.58 12.33 13.47 12.25 4.77 28.54 44.27 85.53 45.77 28.32 43.14 36.77 3.39 2.56 6.59 3.34 4.32 2.91 65 E18_Aa NovelBoundary 0 123.36 6.64 1.51 11.52 24.87 0.00 8.79 4.64 12.36 5.86 13.85 24.91 49.02 39.85 22.25 10.77 17.58 0.00 4.71 5.88 0.00 2.76 4.18 66 ER18a ExonRegion 0 276.36 9.99 24.27 38.14 30.51 49.76 38.38 72.11 73.02 4.80 422.79 621.70 716.37 761.73 360.99 432.95 474.64 0.00 0.00 2.65 121.28 104.99 132.22 67 E18a_E19a KnownJunction 0 263.38 10.06 16.47 22.67 21.65 68.77 53.22 54.30 63.31 1.45 406.26 550.08 750.76 750.96 417.70 309.92 352.97 0.00 0.00 0.00 99.59 112.06 143.41 68 E19_Aa NovelBoundary 0 6.96 0.00 13.96 6.63 21.05 0.00 6.01 1.64 7.96 0.00 6.58 0.00 6.66 4.71 0.00 4.36 7.76 4.73 0.00 8.95 0.00 0.00 4.35 69 ER19a ExonRegion 0 333.15 8.70 29.24 37.72 79.10 58.09 42.66 77.31 67.61 5.79 280.12 483.18 640.97 442.77 425.60 264.37 263.37 4.91 3.11 10.05 53.42 98.83 86.05 70 ER19b ExonRegion 0 24.15 3.70 0.67 3.04 6.20 3.58 4.93 3.93 3.42 0.00 1.05 28.73 39.44 8.79 17.41 0.14 3.00 0.00 2.03 1.26 0.00 1.04 1.33