Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC005915.1 Gene 0 35.47 37.48 25.62 33.82 37.55 32.65 22.33 31.29 22.55 37.95 33.81 39.13 19.30 19.96 58.50 57.26 41.83 44.36 32.69 38.77 8.31 4.36 10.76 2 296662 Transcript 0 33.62 35.45 23.17 28.83 34.24 34.80 18.55 26.17 22.90 34.08 32.68 28.76 15.43 18.20 53.72 53.65 38.71 38.41 24.40 35.54 9.11 3.97 7.99 3 ER1a ExonRegion 0 81.91 106.22 21.24 17.04 81.34 81.18 56.31 21.72 18.03 30.66 27.90 3.90 5.78 25.88 109.67 102.04 67.34 72.00 45.98 63.90 14.62 6.11 22.12 4 ER2a ExonRegion 0 59.72 60.59 25.36 29.72 61.70 51.02 34.62 40.55 34.90 46.45 32.06 20.71 17.43 16.35 51.26 71.48 47.35 68.00 33.45 43.55 9.29 2.37 12.84 5 E2a_E3a KnownJunction 0 38.08 17.23 28.47 39.12 22.24 29.13 2.03 31.09 47.92 47.04 74.91 43.66 12.99 11.89 36.84 33.32 73.59 12.39 4.80 46.98 16.87 0.00 3.41 6 ER3a ExonRegion 0 15.57 20.27 43.00 43.07 18.82 18.87 2.49 43.93 35.72 63.10 64.15 55.64 23.68 29.46 108.28 113.80 72.73 83.93 57.05 68.91 15.21 8.23 21.99 7 E3_Da NovelBoundary 0 0.00 12.76 14.81 11.02 18.25 14.48 7.82 15.61 8.39 5.51 0.00 11.70 6.82 0.00 4.45 3.67 9.07 11.57 3.76 15.60 0.00 0.00 0.00 8 E3a_E4a KnownJunction 1 18.00 20.85 23.12 32.23 18.17 7.84 4.37 25.34 23.38 26.19 12.48 0.00 18.83 17.01 48.33 59.04 7.95 42.03 3.58 20.65 3.15 3.06 0.00 9 I3 Intron 0 4.18 11.04 3.49 6.45 6.54 4.96 7.04 4.37 4.62 4.80 2.24 14.97 10.16 2.52 2.30 3.63 3.90 2.67 3.14 8.49 0.71 0.18 0.57 10 I3_AR1 ActiveIntronRegion 1 12.92 22.93 11.00 9.05 9.31 6.72 11.48 7.09 6.44 8.32 1.14 32.15 15.90 2.59 1.67 2.93 5.85 2.89 3.76 9.95 0.87 0.82 0.36 11 I3_SR2 SilentIntronRegion 0 2.68 6.50 0.88 5.14 4.52 3.76 7.34 4.19 4.55 3.71 3.50 16.89 16.08 3.48 2.27 4.66 3.58 2.99 2.30 10.13 0.93 0.00 0.53 12 E4_Aa NovelBoundary 0 24.52 62.09 18.89 18.38 4.33 12.83 16.47 14.29 10.56 13.00 7.11 0.00 6.33 2.35 4.45 7.35 4.30 1.78 0.00 9.20 3.15 3.12 0.00 13 ER4a ExonRegion 0 11.66 24.01 11.16 16.09 27.46 34.65 14.82 13.52 8.41 19.16 17.80 35.93 18.02 20.97 33.49 23.93 15.35 20.26 19.50 20.53 4.87 4.24 0.15 14 E4_Da NovelBoundary 0 11.11 22.56 11.77 27.17 15.03 46.56 21.11 12.90 4.14 19.21 4.69 11.85 0.00 9.71 20.40 3.76 12.06 4.56 0.00 14.51 0.00 0.00 0.00 15 E4a_E5a KnownJunction 0 9.11 5.79 13.75 14.95 11.97 33.11 8.26 8.54 3.12 16.92 11.90 24.76 6.66 9.83 13.85 12.05 3.65 1.91 13.27 2.75 5.81 5.14 0.00 16 I4 Intron 0 24.19 19.34 22.69 31.00 28.32 19.41 22.14 18.37 15.24 19.92 14.82 39.00 27.06 11.20 17.51 15.50 17.72 9.31 9.04 20.24 2.02 2.88 2.03 17 I4_AR1 ActiveIntronRegion 0 24.26 19.40 22.75 31.09 28.40 19.47 22.20 18.43 15.29 19.98 14.87 39.12 27.14 11.23 17.57 15.55 17.77 9.33 9.07 20.30 2.03 2.88 2.03 18 E5_Aa NovelBoundary 1 36.08 29.99 26.61 57.04 65.03 22.94 35.90 26.04 13.17 20.71 4.47 42.61 33.76 2.30 28.56 12.73 9.35 12.56 17.79 15.34 3.03 0.00 4.35 19 ER5a ExonRegion 0 34.89 28.62 19.29 38.41 32.26 22.61 25.45 24.66 11.76 23.16 20.22 45.47 20.08 14.20 28.01 13.57 21.73 6.78 17.60 17.02 3.06 2.61 3.38 20 IG42_AR17 ActiveIntergenicRegion 0 13.38 14.20 10.73 17.69 23.26 13.64 13.68 14.14 10.52 12.30 9.95 25.60 9.07 10.10 18.06 12.69 13.37 6.54 6.06 14.69 1.53 0.22 0.64 21 IG42_SR10 SilentIntergenicRegion 0 5.32 4.53 3.30 5.85 5.45 5.37 7.71 6.58 2.86 5.77 1.65 16.23 9.07 4.02 3.43 5.94 2.83 1.25 3.33 8.94 0.10 0.15 0.00 22 IG42_AR14 ActiveIntergenicRegion 0 14.95 16.32 21.11 23.89 21.38 20.31 20.75 20.05 15.90 20.16 7.49 26.04 13.28 8.96 10.26 11.31 15.06 15.19 15.62 19.70 1.97 1.50 1.71 23 IG42_SR8 SilentIntergenicRegion 0 49.30 61.25 20.90 35.07 26.33 9.94 22.06 14.48 5.91 16.48 1.16 27.51 10.25 5.18 12.85 5.37 9.28 4.24 5.12 15.38 0.88 1.26 0.59 24 IG42_AR13 ActiveIntergenicRegion 0 27.47 23.33 23.65 29.13 35.48 13.82 21.73 20.36 12.31 17.54 4.66 8.40 9.48 8.25 7.98 10.13 10.49 9.51 16.59 17.44 1.94 1.10 1.04 25 IG42_AR12 ActiveIntergenicRegion 0 19.05 20.24 24.45 20.26 22.01 6.50 23.95 27.97 9.43 19.18 1.41 21.25 11.73 13.73 1.05 5.81 7.20 8.40 14.77 14.51 0.00 0.19 0.00 26 IG42_AR11 ActiveIntergenicRegion 0 8.82 12.88 19.81 14.54 12.04 7.34 19.20 24.20 10.09 14.91 0.00 17.32 10.94 14.62 0.00 8.92 3.85 11.09 10.62 19.15 0.00 2.08 0.00 27 IG42_SR7 SilentIntergenicRegion 0 7.83 17.27 14.78 17.15 18.02 14.34 19.55 13.15 8.02 12.34 4.48 16.21 12.39 5.01 8.56 3.80 7.20 5.97 7.92 15.91 2.28 1.47 1.22 28 IG42_AR10 ActiveIntergenicRegion 0 10.60 18.11 16.01 20.26 22.21 15.72 21.37 17.21 9.77 16.40 5.89 15.48 9.69 6.54 4.35 5.77 7.66 6.54 11.81 14.38 1.46 0.73 0.91 29 IG42_SR6 SilentIntergenicRegion 0 5.00 7.66 3.36 10.34 15.98 12.75 17.22 11.99 7.68 14.68 3.89 13.09 9.54 8.71 6.38 5.46 6.34 7.05 6.36 8.92 1.95 0.46 0.00 30 IG42_AR9 ActiveIntergenicRegion 0 4.23 14.24 7.35 12.27 10.70 1.83 16.11 19.01 8.65 22.36 9.34 8.66 0.00 3.25 0.00 14.86 3.30 11.09 12.21 7.09 0.00 0.00 0.00 31 IG42_AR8 ActiveIntergenicRegion 0 6.95 6.67 9.69 15.00 14.51 13.80 15.38 12.68 13.84 20.22 6.11 12.25 7.62 7.40 5.14 6.95 12.16 9.70 10.81 11.99 4.56 0.87 2.23 32 IG42_SR4 SilentIntergenicRegion 0 6.06 3.90 10.91 16.26 19.73 10.81 17.03 11.53 10.58 20.46 6.56 5.30 0.00 5.71 5.59 14.89 8.79 9.51 9.95 16.61 3.51 0.38 2.78 33 IG42_AR7 ActiveIntergenicRegion 0 3.88 0.00 9.19 16.35 7.14 9.47 17.65 20.74 9.88 13.57 3.87 5.05 0.00 1.62 5.80 5.94 13.20 5.54 6.37 15.96 5.88 0.00 2.94 34 IG42_AR6 ActiveIntergenicRegion 0 6.84 0.94 7.35 16.35 6.79 7.48 21.08 21.01 8.74 12.70 1.93 11.32 0.00 2.50 4.46 4.34 13.97 4.41 9.80 9.49 4.41 0.00 2.94 35 IG42_AR5 ActiveIntergenicRegion 0 13.86 10.03 10.84 19.32 24.05 17.82 21.28 23.92 10.88 19.64 4.21 18.89 3.64 5.36 8.04 11.66 7.50 7.21 12.06 12.47 2.97 1.23 1.42 36 IG42_SR3 SilentIntergenicRegion 0 11.94 9.79 6.85 17.08 20.36 8.02 10.20 10.40 10.71 9.57 2.45 7.53 4.64 1.83 4.85 3.03 4.27 1.71 4.07 7.63 0.50 0.87 0.45 37 IG42_AR4 ActiveIntergenicRegion 0 13.81 8.48 7.02 19.82 15.60 9.70 9.20 12.35 12.05 8.08 3.13 6.85 7.66 3.21 8.05 5.38 2.70 4.22 8.24 6.00 0.60 0.57 1.44