Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CSNK1G3 Gene 0 51.00 101.42 51.15 71.75 85.78 83.38 79.82 65.84 57.74 88.04 48.74 121.22 77.64 75.00 52.30 53.32 85.58 93.73 44.74 71.49 43.96 148.17 61.00 2 345990 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 395412 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 457355 Transcript 1 18.91 68.15 8.16 35.55 37.19 65.34 62.40 32.70 30.98 41.99 35.80 103.29 50.69 51.86 13.41 41.16 55.04 43.64 9.59 48.94 21.96 53.43 55.97 5 395411 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 361991 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 360683 Transcript 0 2.76 3.68 0.71 4.76 2.40 7.01 5.98 6.07 1.75 4.45 0.36 2.56 2.88 0.96 0.54 0.12 0.00 1.11 0.00 3.05 0.00 4.69 3.79 8 IG24_AR1 ActiveIntergenicRegion 0 4.65 17.29 31.61 12.66 17.80 3.06 17.29 7.90 6.16 12.96 0.85 3.31 1.27 2.51 4.60 1.45 2.76 18.88 16.00 9.68 2.32 2.98 0.80 9 IG24_AR2 ActiveIntergenicRegion 0 1.63 13.92 40.34 10.48 35.61 6.77 15.48 9.31 7.98 12.62 0.00 4.33 0.00 3.25 5.36 5.72 6.60 47.19 58.07 4.75 4.41 1.44 8.58 10 IG24_AR3 ActiveIntergenicRegion 0 3.61 14.32 23.55 5.23 9.94 5.24 10.75 6.35 3.01 9.75 1.12 0.76 0.00 2.83 3.60 1.73 5.65 15.45 14.33 7.69 2.18 1.15 2.44 11 ER1a ExonRegion 1 1.04 7.45 8.80 2.82 4.65 10.93 8.76 6.16 8.01 18.07 25.19 4.47 6.95 46.47 13.68 45.41 46.31 79.74 35.67 21.79 57.05 29.10 67.90 12 E1a_E2a KnownJunction 1 3.78 24.27 4.49 5.99 22.33 52.81 26.98 17.42 20.66 24.10 10.00 30.46 31.82 85.64 17.80 38.02 62.09 130.58 35.39 26.72 48.37 54.87 30.39 13 I1_AR1 ActiveIntronRegion 0 7.22 5.37 4.73 1.66 2.62 3.56 6.54 5.57 3.44 4.54 0.70 25.21 15.97 2.10 1.87 5.31 9.83 1.56 2.08 4.56 0.11 1.94 3.75 14 ER2a ExonRegion 0 13.72 28.30 19.26 23.68 34.65 44.80 47.88 41.18 39.89 45.74 72.34 108.67 73.19 92.53 32.01 60.76 98.01 117.87 23.07 67.59 47.93 95.19 47.38 15 E2_Ab KnownBoundary 0 16.52 28.94 23.33 34.76 39.13 51.62 53.75 59.52 49.13 57.65 80.07 154.55 85.71 121.08 56.49 84.68 194.48 72.79 20.24 82.39 81.11 151.86 70.08 16 ER2b ExonRegion 1 14.64 47.48 16.55 23.72 44.35 62.11 56.67 51.33 49.86 59.08 78.07 195.06 111.29 130.06 42.48 72.91 150.01 121.37 36.50 69.03 97.14 124.23 62.95 17 E2a_E3a KnownJunction 0 44.30 61.24 6.80 25.80 32.17 37.54 73.05 34.38 49.28 65.97 105.76 138.04 134.08 139.56 68.61 82.80 187.56 68.03 31.44 78.30 80.00 99.57 95.09 18 I2_AR2 ActiveIntronRegion 0 13.59 6.43 1.46 3.88 7.60 2.08 8.98 3.55 3.01 6.34 1.12 11.48 14.24 2.88 3.49 2.48 4.59 2.20 6.56 4.18 2.14 1.98 1.77 19 ER3a ExonRegion 0 32.32 64.13 12.79 27.62 47.05 44.68 62.94 48.90 48.23 65.07 105.56 173.81 111.65 150.69 65.81 108.52 186.70 124.52 65.34 79.86 85.62 171.36 89.60 20 E3a_E4a KnownJunction 0 44.23 100.05 22.18 26.00 80.98 47.42 59.53 48.47 41.38 54.56 84.92 217.87 120.45 174.76 58.97 126.12 178.12 121.54 92.61 99.39 93.90 229.50 98.51 21 ER4a ExonRegion 1 24.37 62.98 15.63 31.15 96.94 68.09 71.13 57.85 44.75 66.36 87.86 176.64 116.25 114.41 31.13 82.79 155.99 118.12 60.39 69.06 66.74 161.00 73.25 22 E4a_E5a KnownJunction 1 28.60 58.15 20.73 36.06 100.08 78.59 72.96 53.97 52.86 79.67 92.60 203.62 120.28 97.36 20.03 54.00 120.71 89.41 39.62 89.16 45.41 163.06 45.07 23 ER5a ExonRegion 0 20.87 59.48 32.65 56.03 58.76 91.74 73.56 62.75 70.00 93.83 85.98 212.23 138.72 112.21 57.01 93.61 171.05 146.91 59.97 99.90 69.48 199.08 88.04 24 E5a_E6a KnownJunction 0 10.45 110.31 39.62 68.66 77.67 54.68 95.17 63.71 89.76 109.60 94.55 167.60 181.32 100.24 51.67 83.40 160.17 103.26 70.31 137.87 60.11 192.46 66.75 25 ER6a ExonRegion 0 36.85 87.76 39.86 54.28 88.60 109.04 103.44 71.67 82.58 98.76 84.27 214.39 214.82 111.26 51.98 79.26 171.59 108.47 49.22 116.04 52.88 187.14 73.80 26 E6a_E7a KnownJunction 1 58.31 78.87 33.35 50.64 123.09 77.46 83.60 74.80 54.11 97.78 60.80 300.25 173.37 133.68 83.07 94.08 173.91 79.51 63.44 144.32 47.75 180.33 65.99 27 ER7a ExonRegion 0 46.12 98.56 34.08 41.54 73.65 71.07 76.08 79.87 66.45 97.29 79.20 215.16 129.52 103.91 58.73 80.94 158.94 83.36 46.04 122.83 55.96 183.91 66.25 28 E7a_E8a KnownJunction 0 24.67 161.88 40.83 48.58 99.41 81.32 84.75 87.24 68.00 110.11 51.01 238.58 157.13 91.88 55.13 86.73 218.42 71.34 50.07 90.76 75.92 171.82 63.94 29 ER8a ExonRegion 1 31.37 175.84 30.53 49.19 110.78 115.98 146.79 76.44 66.04 95.48 62.53 236.80 234.89 90.34 55.87 59.30 137.78 81.50 27.62 113.04 41.40 157.32 74.04 30 E8a_E9a KnownJunction 0 17.71 58.02 6.21 35.33 36.25 66.95 59.93 26.94 27.37 35.81 33.43 81.03 25.16 44.85 5.07 37.00 49.84 30.92 4.05 47.87 22.43 45.93 51.73 31 E8a_E9b KnownJunction 1 40.90 137.15 23.62 41.99 56.88 77.91 114.91 39.18 39.90 70.83 29.74 132.04 137.98 71.69 20.27 58.19 70.78 64.75 21.65 62.19 18.16 100.73 45.75 32 ER9a ExonRegion 0 20.11 78.29 10.11 35.78 38.13 63.72 64.87 38.46 34.58 48.17 38.17 125.55 76.21 58.87 21.76 45.32 60.24 56.36 15.13 50.00 21.49 60.94 60.20 33 ER9b ExonRegion 0 45.70 127.48 49.71 62.69 95.00 106.07 94.21 75.10 73.08 102.94 80.88 212.53 112.04 125.21 65.29 118.13 145.38 195.52 74.03 113.90 75.75 192.43 107.87 34 E9a_E10a KnownJunction 0 41.79 87.29 61.97 79.74 156.20 73.31 92.17 52.25 59.11 86.41 76.23 164.45 138.14 110.31 48.33 80.75 153.16 338.92 82.83 124.51 87.23 146.04 117.89 35 ER10a ExonRegion 0 50.64 156.08 47.71 52.71 106.78 91.79 84.98 70.74 66.09 84.36 81.66 161.72 113.39 129.56 59.84 125.91 155.69 311.92 87.70 117.71 101.76 144.72 107.07 36 E10a_E11a KnownJunction 0 13.19 122.15 20.76 40.42 28.35 35.95 37.10 29.08 19.47 49.64 2.68 0.00 6.82 5.06 0.00 3.42 4.21 183.43 14.21 58.55 43.06 42.86 25.44 37 E10a_E12a KnownJunction 0 102.39 165.37 32.35 35.09 111.21 87.05 95.17 63.21 63.34 56.73 102.55 145.25 74.35 134.50 73.80 181.92 247.97 119.55 82.26 60.27 116.33 220.62 109.78 38 ER11a ExonRegion 0 10.16 82.25 19.48 32.18 26.51 26.15 34.97 25.21 19.29 51.81 1.09 2.44 6.45 6.73 2.54 2.94 5.78 179.85 26.08 68.62 39.74 33.10 36.10 39 E11a_E12a KnownJunction 0 22.89 146.29 22.15 29.93 18.08 56.73 46.77 28.71 22.83 49.53 4.21 0.00 14.45 11.71 4.82 7.09 8.60 292.62 60.24 94.28 51.83 48.13 64.96 40 ER12a ExonRegion 0 49.69 155.88 39.03 66.51 82.55 104.53 82.74 52.42 56.38 84.01 76.81 145.66 69.91 139.70 77.52 108.33 184.05 239.65 89.73 102.82 124.91 162.90 115.30 41 E12a_E13a KnownJunction 0 17.34 79.66 24.13 48.41 38.71 123.34 62.14 25.92 37.01 69.55 4.79 24.31 6.33 11.60 21.14 11.71 0.00 163.58 22.49 77.34 77.65 48.25 60.61 42 E12a_E14a KnownJunction 0 13.26 0.00 10.11 6.93 15.62 16.58 3.80 0.00 6.25 0.00 50.64 71.42 61.36 121.49 97.53 99.89 125.01 0.00 0.00 0.00 7.72 49.29 22.19 43 E13a_E14a KnownJunction 0 13.48 97.55 20.46 38.76 54.33 82.91 79.80 28.38 25.64 42.58 7.58 0.00 0.00 17.13 13.72 15.30 0.00 161.46 64.66 66.99 100.14 122.10 35.25 44 ER13a ExonRegion 0 14.46 93.54 28.29 52.93 50.84 115.15 72.10 37.02 44.46 74.88 8.86 15.51 1.56 13.60 16.80 15.60 0.28 204.95 52.96 83.95 108.26 96.36 56.04 45 I13_AR1 ActiveIntronRegion 0 1.23 0.71 1.69 1.38 1.86 0.21 4.59 1.56 2.29 2.08 2.91 21.62 17.53 4.78 0.67 5.07 4.59 1.18 2.22 2.96 1.27 9.75 9.87 46 E14_Aa NovelBoundary 0 12.97 0.00 5.20 3.36 35.65 9.82 50.35 4.44 4.31 4.84 4.90 21.46 0.00 2.41 0.00 17.35 0.00 11.94 4.80 2.49 5.44 20.08 4.35 47 ER14a ExonRegion 0 71.78 128.32 62.54 95.49 107.38 111.19 109.58 84.33 79.00 117.85 64.07 169.67 80.66 96.58 77.13 61.76 100.15 105.16 54.15 81.76 45.72 211.68 74.43 48 E14_Da KnownBoundary 0 98.98 254.63 81.16 146.27 100.85 64.68 166.14 81.20 79.34 140.33 55.07 119.29 52.92 71.75 61.81 39.22 108.74 97.91 46.78 108.72 46.70 160.55 106.19 49 ER14b ExonRegion 0 87.14 149.25 91.62 123.68 133.94 105.52 99.14 92.29 68.49 117.06 24.74 88.27 64.30 44.54 60.85 28.81 41.00 43.80 42.61 68.12 15.41 166.55 42.13 50 E14_Db KnownBoundary 0 0.00 2.96 0.00 9.32 7.22 18.06 4.15 2.34 3.59 7.98 0.00 0.00 0.00 0.00 0.00 3.59 0.00 1.62 0.00 5.50 0.00 2.39 0.00 51 ER14c ExonRegion 0 2.76 3.68 0.71 4.76 2.40 7.01 5.98 6.07 1.75 4.45 0.36 2.56 2.88 0.96 0.54 0.12 0.00 1.11 0.00 3.05 0.00 4.69 3.79