Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 EPB41L4A Gene 0 50.53 85.45 73.12 102.25 129.02 116.10 74.30 171.95 87.96 123.04 15.72 33.73 14.55 15.87 9.37 14.01 8.02 23.07 31.82 34.18 6.22 13.91 9.51 2 261486 Transcript 0 53.25 83.47 83.41 99.08 126.68 110.18 74.78 173.10 86.41 119.32 10.58 32.30 11.38 17.98 9.16 13.58 9.06 22.27 30.49 32.80 4.54 13.63 12.31 3 359109 Transcript 0 1.26 0.87 0.04 0.51 4.53 4.30 1.60 2.30 0.68 6.30 6.43 2.55 0.00 0.10 0.00 0.43 2.11 0.20 0.00 0.01 1.44 0.00 0.24 4 ER1a ExonRegion 0 2.03 1.31 4.61 6.11 11.36 19.54 8.29 33.97 12.93 27.62 1.75 3.05 1.06 2.66 0.00 0.00 0.90 0.38 0.74 0.31 2.03 3.02 1.61 5 E1a_E2a KnownJunction 0 0.00 3.03 14.69 16.45 36.93 48.55 9.89 46.45 27.49 45.93 4.95 6.30 0.00 0.00 0.00 0.00 0.00 0.00 4.33 0.00 2.78 3.12 0.00 6 I1_AR19 ActiveIntronRegion 0 1.06 0.84 0.74 3.17 0.81 0.26 18.29 6.39 1.59 16.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.16 0.00 0.42 7 ER2a ExonRegion 0 3.29 0.29 8.78 17.91 37.97 36.89 35.72 64.46 36.71 64.46 6.76 1.28 1.88 1.55 0.00 0.00 0.00 4.28 0.46 0.97 2.69 4.94 4.73 8 E2a_E3a KnownJunction 0 9.93 0.00 9.91 15.72 46.77 23.11 46.42 73.15 46.82 67.64 2.11 0.00 0.00 2.30 0.00 0.00 0.00 4.60 0.00 0.00 5.81 5.33 3.93 9 ER3a ExonRegion 0 2.77 1.53 13.76 14.13 43.43 41.33 30.65 70.73 50.90 82.64 6.13 3.08 0.00 10.18 0.00 0.00 0.00 3.41 0.00 0.00 1.65 4.85 4.86 10 E3a_E4a KnownJunction 0 6.52 2.83 19.22 16.91 54.50 59.34 46.99 67.73 57.26 97.00 14.11 0.00 0.00 2.47 0.00 0.00 0.00 2.45 0.00 0.00 0.00 2.33 0.00 11 ER4a ExonRegion 0 5.39 2.93 15.03 15.77 56.26 57.71 30.20 69.66 52.42 100.91 13.77 2.58 0.42 4.44 0.00 1.77 0.00 2.36 2.02 0.00 1.42 2.64 2.04 12 E4a_E5a KnownJunction 0 6.52 0.00 14.37 19.54 70.97 52.92 29.54 61.69 49.04 90.20 11.11 6.00 6.17 9.54 0.00 0.00 0.00 1.66 0.00 0.00 0.00 2.45 7.00 13 ER5a ExonRegion 0 3.97 1.25 11.98 12.10 41.04 38.15 25.64 67.41 49.53 95.84 17.49 6.41 1.68 5.87 0.00 0.12 0.00 2.04 0.36 0.00 0.94 3.42 1.41 14 E5a_E6a KnownJunction 0 6.74 6.58 4.02 10.95 62.56 64.62 42.97 55.70 54.57 106.27 8.95 5.40 0.00 4.71 0.00 0.00 0.00 3.90 3.86 0.00 2.47 0.00 0.00 15 ER6a ExonRegion 0 6.47 3.92 11.67 11.57 60.44 68.34 48.83 69.70 45.32 106.01 9.39 7.66 4.42 6.05 0.00 1.25 1.34 1.31 1.08 3.32 3.90 3.53 1.24 16 E6a_E7a KnownJunction 0 3.41 8.68 1.83 15.15 74.96 52.13 47.56 72.62 41.00 90.93 7.42 5.40 6.82 7.95 0.00 0.00 0.00 0.00 0.00 2.94 8.65 11.57 0.00 17 ER7a ExonRegion 0 11.93 6.38 11.03 11.26 66.38 57.14 36.30 74.85 37.14 93.69 11.88 6.54 0.64 3.95 0.00 0.00 0.98 0.00 1.85 0.99 3.88 3.01 0.00 18 E7a_E8a KnownJunction 0 14.74 0.00 12.21 14.12 57.39 74.45 59.58 73.11 42.01 98.48 7.42 5.55 0.00 4.71 0.00 0.00 4.39 0.00 0.00 3.07 0.00 3.12 0.00 19 ER8a ExonRegion 0 10.32 5.51 12.10 14.50 61.96 78.65 48.17 78.42 34.87 84.51 12.16 9.10 5.22 7.46 0.00 0.00 2.89 0.00 1.83 3.54 4.01 5.76 7.69 20 E8a_E9a KnownJunction 0 12.97 12.50 9.17 22.31 104.41 96.54 39.22 111.80 43.37 82.39 27.22 29.41 13.47 4.71 0.00 0.00 0.00 0.00 0.00 3.26 3.03 14.88 4.35 21 ER9a ExonRegion 0 14.78 4.16 9.48 24.96 74.75 87.39 48.24 106.43 49.48 93.44 24.31 12.72 7.04 2.49 0.00 0.00 5.11 0.00 0.00 1.00 5.68 8.59 1.24 22 E9a_E10a KnownJunction 0 2.96 5.92 15.20 26.80 63.24 107.10 47.78 114.97 52.66 109.68 11.53 12.60 7.95 4.94 0.00 0.00 0.00 0.00 0.00 0.00 5.31 7.96 0.00 23 ER10a ExonRegion 0 9.69 6.92 16.69 22.40 71.37 80.95 47.58 123.98 62.36 126.26 21.26 10.31 10.96 6.64 0.00 1.65 2.48 0.60 3.53 2.10 3.31 8.81 5.87 24 E10a_E11a KnownJunction 0 3.78 13.62 21.85 26.24 74.62 84.27 67.08 113.28 66.06 123.30 36.27 11.85 36.20 6.95 0.00 0.00 14.21 2.53 0.00 2.68 6.12 5.82 11.10 25 ER11a ExonRegion 0 11.75 10.79 19.89 34.23 68.03 91.53 64.93 121.57 68.64 110.25 13.80 14.32 20.14 5.06 0.00 0.00 9.56 1.09 0.00 0.30 5.17 11.17 5.65 26 E11a_E12a KnownJunction 0 7.19 3.09 33.56 30.47 79.97 127.03 38.64 135.54 61.43 130.76 0.00 0.00 7.95 0.00 0.00 0.00 13.65 0.00 0.00 0.00 2.53 8.39 3.93 27 ER12a ExonRegion 0 14.02 13.23 17.27 37.05 50.40 84.64 45.34 125.75 60.55 115.61 14.32 13.31 15.22 2.72 0.00 0.00 5.14 0.00 4.93 1.83 3.87 10.32 2.89 28 E12a_E13a KnownJunction 0 23.78 8.49 24.16 48.94 65.53 73.82 53.61 158.22 55.58 134.66 9.48 25.66 20.13 0.00 0.00 0.00 13.65 2.11 7.15 6.52 0.00 8.02 0.00 29 ER13a ExonRegion 0 17.19 11.55 16.82 41.58 74.39 75.35 50.00 148.31 63.49 141.88 12.45 12.70 14.28 6.96 0.00 0.00 2.87 0.00 3.99 1.12 3.71 11.97 0.97 30 E13a_E14a KnownJunction 0 33.27 9.87 15.55 57.97 138.62 100.34 104.00 177.11 72.71 162.00 19.64 5.55 13.31 4.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.57 4.35 31 ER14a ExonRegion 0 25.35 14.24 13.41 34.30 99.13 122.43 78.18 144.61 60.49 126.34 16.73 17.63 11.28 5.41 0.00 0.00 2.00 0.00 6.29 0.28 6.32 10.86 3.92 32 E14a_E15a KnownJunction 0 24.08 27.23 13.93 39.52 47.62 144.01 64.12 124.41 46.64 126.92 11.48 18.46 19.97 2.47 0.00 0.00 0.00 0.00 3.86 2.68 2.53 0.00 7.77 33 ER15a ExonRegion 0 11.81 17.14 13.15 19.55 52.88 95.07 62.76 107.63 52.00 105.05 10.95 11.28 10.78 5.19 0.00 0.00 1.10 0.00 2.57 2.65 2.73 6.73 2.91 34 E15a_E16a KnownJunction 0 3.56 12.17 16.17 15.08 79.80 90.18 42.79 113.28 43.34 99.01 6.95 0.00 0.00 7.36 0.00 0.00 4.11 0.00 0.00 0.00 7.78 5.45 0.00 35 ER16a ExonRegion 0 8.51 5.21 13.25 25.24 73.64 67.58 32.30 101.51 56.07 123.63 5.11 6.85 23.94 7.55 0.00 0.00 0.89 0.00 0.00 0.18 3.17 4.17 3.92 36 E16a_E17a KnownJunction 0 10.15 0.00 13.13 30.60 58.91 80.75 33.43 93.40 62.33 136.49 2.21 12.60 14.12 4.94 0.00 0.00 0.00 0.00 0.00 0.00 2.84 0.00 8.54 37 ER17a ExonRegion 0 20.43 10.74 17.94 23.45 129.60 105.02 61.24 106.54 54.35 141.48 10.04 16.26 3.91 6.39 0.00 0.00 0.25 0.00 0.12 2.67 3.22 3.26 5.27 38 E17a_E18a KnownJunction 0 13.71 17.63 12.21 21.28 100.76 117.77 48.71 119.77 40.02 127.76 7.42 13.05 6.82 4.89 0.00 0.00 0.00 0.00 0.00 0.00 2.41 3.12 0.00 39 ER18a ExonRegion 0 15.72 14.39 21.79 25.60 83.06 82.69 66.98 111.27 55.53 130.27 6.62 16.16 13.01 9.04 0.82 0.00 3.16 0.00 1.96 3.05 6.52 4.74 3.25 40 E18a_E19a KnownJunction 0 28.23 5.85 25.61 27.84 130.98 99.09 111.33 143.76 66.46 142.61 8.48 25.06 18.34 18.48 0.00 0.00 4.68 0.00 4.80 3.20 7.97 2.14 3.16 41 ER19a ExonRegion 0 9.97 7.37 21.39 26.35 84.68 94.17 59.30 101.55 57.18 114.48 10.35 10.55 8.40 10.59 0.12 0.00 2.20 0.00 2.46 1.42 4.50 5.34 3.49 42 E19a_E20a KnownJunction 0 3.56 9.80 20.31 25.67 109.00 80.12 87.88 78.78 45.20 106.51 4.42 6.30 0.00 9.77 0.00 0.00 0.00 0.00 4.05 0.00 6.18 14.02 7.94 43 ER20a ExonRegion 0 13.83 14.06 28.82 23.94 88.57 91.13 64.66 108.49 51.39 113.79 7.82 20.52 3.60 6.05 0.00 0.00 4.21 0.13 1.80 1.08 6.04 14.46 3.92 44 E20a_E21a KnownJunction 0 27.26 18.35 36.49 26.97 133.96 93.01 69.69 137.93 70.77 125.66 14.69 20.11 13.47 2.47 0.00 0.00 13.74 0.00 0.00 2.75 8.03 11.21 4.35 45 E21_Aa NovelBoundary 0 10.52 6.31 1.21 38.62 46.18 38.61 8.35 46.04 23.21 16.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.14 32.00 11.44 0.00 0.00 4.27 46 ER21a ExonRegion 0 11.42 9.86 19.42 35.20 90.06 65.55 39.86 92.78 41.96 83.94 9.56 9.91 3.72 6.55 0.00 0.32 4.46 1.27 1.46 4.39 3.08 8.17 4.68 47 E21a_E22a KnownJunction 0 13.34 9.14 16.17 36.03 105.77 90.35 40.28 110.74 40.54 101.86 7.16 13.80 0.00 7.06 0.00 3.67 4.49 0.00 0.00 2.56 2.72 2.33 0.00 48 E22_Aa NovelBoundary 0 5.63 6.51 2.99 19.58 34.55 24.59 9.54 29.86 34.75 16.52 0.00 0.00 0.00 2.47 0.00 0.00 0.00 2.45 4.80 5.24 0.00 0.00 0.00 49 ER22a ExonRegion 0 11.74 12.52 34.62 24.58 71.04 54.75 45.40 95.97 47.87 88.44 7.19 9.08 2.75 6.38 1.27 1.41 3.62 1.71 0.23 7.68 3.09 8.38 2.04 50 E22_Da NovelBoundary 0 0.00 17.50 6.33 33.30 37.61 74.96 11.61 26.74 22.51 31.00 2.47 0.00 6.82 0.00 0.00 0.00 0.00 2.24 14.40 5.82 0.00 0.00 0.00 51 E22a_E23a KnownJunction 0 16.15 5.72 35.95 15.78 53.06 50.71 40.98 86.67 39.76 79.83 0.00 6.75 0.00 9.48 0.00 0.00 4.49 0.00 0.00 0.00 0.00 5.45 8.71 52 E22a_E24a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 53 E22a_E25a NovelJunction 0 6.67 0.00 0.00 3.70 4.24 0.00 0.00 11.83 0.00 22.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.06 0.00 54 I22 Intron 0 12.95 17.56 12.28 40.58 33.61 29.67 20.54 41.80 27.95 18.80 1.38 5.15 2.66 1.84 1.77 2.13 1.15 10.18 7.74 7.98 0.76 1.72 5.35 55 I22_SR1 SilentIntronRegion 0 5.74 10.88 7.09 22.18 24.90 26.74 16.78 24.73 21.18 14.90 1.84 2.93 1.19 1.81 1.33 1.09 0.24 4.85 3.97 6.70 0.65 1.37 1.94 56 I22_AR1 ActiveIntronRegion 0 12.09 5.43 9.73 16.71 24.22 31.02 21.71 26.78 14.94 4.50 0.00 3.06 0.00 0.68 0.00 0.95 0.44 1.60 4.82 7.42 0.00 1.07 3.45 57 I22_AR2 ActiveIntronRegion 0 14.15 12.31 14.12 29.34 26.56 27.91 20.71 41.12 26.54 16.76 1.28 2.13 2.15 1.85 1.60 4.06 0.81 16.48 9.29 7.81 0.82 1.18 10.17 58 I22_SR2 SilentIntronRegion 0 20.07 21.66 16.66 39.33 36.08 34.15 23.98 52.85 42.91 19.13 0.98 1.38 0.00 1.66 0.00 1.20 1.26 8.68 5.71 6.54 0.60 1.46 6.84 59 I22_AR3 ActiveIntronRegion 0 17.08 28.21 15.04 69.07 47.48 32.57 22.98 57.49 33.66 25.99 1.38 10.54 5.41 2.10 2.98 2.12 2.27 12.31 11.03 9.77 1.00 2.57 5.01 60 E23_Aa NovelBoundary 0 5.78 22.82 26.91 68.36 19.19 15.39 13.65 53.68 17.25 9.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.67 0.00 0.00 0.00 3.33 61 ER23a ExonRegion 0 90.35 161.23 130.87 182.38 200.30 169.66 108.58 259.52 133.06 158.81 21.16 57.85 22.77 26.48 18.31 27.15 13.64 44.55 60.99 65.60 9.07 21.81 15.92 62 E23_Da NovelBoundary 1 29.34 333.95 108.01 185.66 101.87 79.67 75.87 120.02 120.17 70.03 19.95 100.98 48.86 60.16 4.45 33.07 21.69 30.22 37.27 126.88 6.12 5.27 6.57 63 I23 Intron 0 29.95 160.92 69.09 131.98 79.68 69.40 49.25 84.34 95.99 51.17 16.22 78.10 34.86 18.09 13.06 24.45 16.29 29.07 43.50 68.96 1.45 18.51 4.35 64 I23_AR1 ActiveIntronRegion 0 30.14 161.91 69.54 132.83 80.19 69.83 49.57 84.89 96.60 51.49 16.32 78.59 35.07 18.21 13.13 24.59 16.39 29.26 43.78 69.40 1.46 18.63 4.38 65 Ix Intron 0 11.42 13.72 9.36 7.12 4.33 3.96 6.07 6.95 6.46 6.00 7.82 4.05 3.35 9.93 9.39 15.24 6.24 5.95 8.60 4.02 5.35 6.18 3.17 66 Ix_AR1 ActiveIntronRegion 0 11.54 13.87 9.46 7.20 4.38 4.00 6.14 7.02 6.53 6.06 7.91 4.10 3.39 10.03 9.50 15.40 6.30 6.02 8.69 4.06 5.41 6.25 3.20 67 ER24a ExonRegion 0 1.51 0.19 0.23 0.45 0.00 0.44 0.00 0.00 0.71 0.52 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.00 0.28 68 E24a_E25a KnownJunction 0 3.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 69 ER25a ExonRegion 0 2.21 0.41 0.00 2.59 11.34 10.85 3.29 0.78 0.80 9.21 12.47 4.26 0.00 0.58 0.00 2.57 2.01 1.19 0.00 0.00 1.27 0.00 1.17 70 E25a_E26a KnownJunction 0 0.00 3.35 0.00 0.00 12.14 9.77 4.37 12.12 1.13 19.80 17.00 7.65 0.00 0.00 0.00 0.00 8.42 0.00 0.00 0.00 5.68 0.00 0.00 71 ER26a ExonRegion 0 0.05 1.25 0.00 0.00 3.71 4.75 1.93 0.90 0.00 6.96 9.14 2.76 0.00 0.00 0.00 0.00 2.25 0.00 0.00 0.00 1.70 0.00 0.00 72 IG10_AR2 ActiveIntergenicRegion 0 0.00 0.00 0.00 0.00 3.49 2.83 0.00 4.32 2.00 4.67 27.15 0.00 0.00 0.25 0.00 1.22 0.45 0.00 0.00 0.00 1.14 0.00 0.00 73 IG10_SR1 SilentIntergenicRegion 0 0.00 0.00 0.00 0.00 0.71 1.74 0.44 6.28 1.87 4.42 26.61 0.00 0.00 1.11 0.00 1.68 2.31 0.00 0.00 0.43 2.57 0.00 0.00 74 IG10_AR1 ActiveIntergenicRegion 0 0.00 0.54 0.98 2.16 10.00 2.88 1.98 6.14 19.15 2.79 24.77 0.00 1.03 0.31 0.00 0.79 1.76 0.00 0.00 1.00 2.72 0.00 0.00