Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 MEF2C Gene 0 124.72 8.15 39.83 37.07 108.80 21.28 27.90 42.95 40.58 25.40 445.96 694.33 502.82 391.34 220.79 378.66 326.74 0.12 0.00 0.00 55.95 83.44 32.00 2 424173 Transcript 1 13.24 0.37 0.20 1.08 4.00 1.38 3.07 2.35 1.82 0.37 69.92 79.22 59.72 60.00 11.33 92.21 54.01 0.30 0.00 0.00 3.40 6.40 5.26 3 437473 Transcript 0 0.06 0.00 0.00 0.00 0.00 0.00 0.00 2.26 1.55 2.41 0.27 0.54 0.39 0.38 0.16 0.45 0.23 0.00 0.00 0.00 0.03 0.03 0.08 4 340208 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 IG2_AR57 ActiveIntergenicRegion 0 2.04 10.37 5.16 0.49 0.00 9.18 19.81 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.66 0.61 2.60 0.00 0.00 0.00 6 IG2_AR49 ActiveIntergenicRegion 0 0.00 6.21 0.35 0.00 0.00 3.10 2.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.64 0.00 18.28 0.00 0.00 0.00 7 IG2_AR43 ActiveIntergenicRegion 0 16.14 0.75 0.00 0.58 5.01 0.00 0.50 0.18 0.53 0.49 7.35 18.41 6.06 6.40 1.15 15.88 4.03 0.00 0.00 0.00 0.00 0.00 0.00 8 IG2_SR37 SilentIntergenicRegion 0 2.73 0.02 0.00 0.16 2.43 0.17 0.36 0.10 0.41 0.07 5.18 18.67 6.07 5.71 0.60 14.46 4.92 0.00 0.00 0.00 0.14 0.14 0.08 9 IG2_AR42 ActiveIntergenicRegion 0 1.86 0.00 0.00 0.00 1.96 0.84 0.57 0.00 0.27 0.26 1.67 26.62 3.82 5.26 0.30 9.19 2.38 0.00 0.00 0.00 0.00 0.00 0.00 10 IG2_SR36 SilentIntergenicRegion 0 4.39 0.00 0.00 0.00 5.34 0.34 0.27 0.00 0.55 0.50 9.06 37.55 11.94 11.16 2.01 22.73 5.45 0.00 0.00 0.00 0.00 0.42 0.00 11 IG2_AR41 ActiveIntergenicRegion 0 9.32 0.00 0.00 0.00 3.67 0.25 0.36 0.00 0.25 0.23 15.91 58.38 12.03 15.20 2.47 34.22 16.48 0.00 0.00 0.00 0.90 0.00 0.00 12 IG2_AR40 ActiveIntergenicRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.78 18.50 3.07 6.47 0.00 38.39 13.83 0.00 0.00 0.00 3.07 0.00 0.00 13 IG2_AR38 ActiveIntergenicRegion 0 2.49 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 12.23 8.77 4.92 3.78 0.00 23.85 6.31 0.00 0.00 0.00 0.00 0.00 0.00 14 IG2_AR11 ActiveIntergenicRegion 0 4.31 0.79 0.28 1.26 2.21 0.47 1.19 0.13 1.09 1.85 4.98 20.77 14.34 12.49 5.93 9.19 6.63 0.00 0.00 0.00 1.36 0.21 1.13 15 IG2_AR10 ActiveIntergenicRegion 0 3.56 0.61 0.00 1.34 1.28 0.33 1.51 0.31 0.04 1.20 4.73 13.20 16.33 9.26 3.64 9.27 9.39 0.00 0.00 0.00 3.03 0.37 0.70 16 IG2_SR9 SilentIntergenicRegion 0 2.47 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.45 1.02 6.28 17.04 13.88 11.16 1.86 6.91 11.93 0.00 0.00 0.00 0.97 0.31 1.30 17 IG2_AR9 ActiveIntergenicRegion 0 5.36 0.08 0.33 0.71 2.08 0.17 2.18 0.24 0.84 2.62 7.43 36.27 27.64 11.79 9.55 6.01 7.18 0.00 0.00 0.00 1.41 0.38 0.54 18 IG2_AR8 ActiveIntergenicRegion 0 1.73 0.25 0.00 0.64 0.65 0.00 0.42 0.00 0.22 0.98 5.55 15.37 11.15 5.52 2.17 3.86 5.56 0.00 0.00 0.00 1.88 1.43 0.71 19 IG2_AR3 ActiveIntergenicRegion 0 11.02 16.10 24.47 73.79 13.16 15.33 14.53 36.54 12.27 10.04 10.09 24.41 30.42 13.17 9.31 17.30 12.38 7.19 1.86 20.18 2.66 4.02 6.36 20 ER1a ExonRegion 0 5.47 0.00 1.27 0.00 1.00 3.41 1.87 0.92 0.00 0.00 4.27 3.79 1.44 2.67 0.74 3.30 7.37 1.96 0.00 0.00 1.59 0.78 1.09 21 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22 ER2a ExonRegion 0 11.63 1.07 0.13 0.07 1.77 1.93 2.47 0.05 0.46 0.73 3.27 7.19 8.56 3.82 4.34 1.59 6.91 0.13 0.00 0.00 1.23 2.28 0.00 23 E2a_E4a KnownJunction 0 3.78 0.00 0.00 0.00 4.07 0.00 5.56 0.00 1.79 1.21 0.00 0.00 0.00 2.47 0.00 0.00 8.51 0.00 0.00 0.00 0.00 0.00 0.00 24 ER3a ExonRegion 0 67.56 2.93 12.48 6.13 61.39 8.19 13.95 7.88 10.67 4.17 267.27 88.40 124.10 191.03 54.09 178.46 216.12 0.00 0.00 0.00 36.78 20.59 15.65 25 E3a_E4a KnownJunction 1 431.04 25.52 48.70 40.89 99.32 2.90 9.36 42.80 39.73 20.68 302.81 365.82 493.31 507.15 125.47 682.64 321.55 0.00 0.00 0.00 38.80 58.48 56.08 26 I3_AR2 ActiveIntronRegion 0 9.05 3.09 20.03 1.54 8.12 0.00 2.28 3.75 6.40 1.81 23.79 143.68 92.81 14.07 5.41 28.06 18.96 0.00 0.00 0.00 1.60 2.86 0.00 27 I3_AR3 ActiveIntronRegion 0 30.64 5.34 17.22 5.11 13.18 0.00 5.03 4.32 6.27 2.47 26.34 98.39 42.21 13.97 12.91 28.38 24.01 0.00 0.00 0.00 6.72 0.00 1.91 28 I3_SR3 SilentIntronRegion 0 81.02 2.00 28.08 12.04 21.85 2.15 6.86 7.03 3.04 4.09 20.89 120.32 72.88 9.17 25.27 37.36 15.64 0.00 0.00 0.00 0.57 0.81 0.79 29 I3_AR4 ActiveIntronRegion 0 144.64 2.39 30.99 18.43 47.02 0.74 7.57 9.50 4.87 4.56 14.68 110.67 66.59 4.88 38.17 50.55 17.72 0.00 0.00 0.00 1.33 0.42 2.08 30 I3_AR5 ActiveIntronRegion 0 65.61 0.00 9.80 2.73 13.38 0.00 0.00 6.91 7.41 0.00 15.46 4.33 4.69 6.50 8.70 32.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 I3_SR5 SilentIntronRegion 1 186.00 5.67 32.95 18.22 45.14 0.35 10.00 12.67 5.37 5.71 26.80 106.55 101.39 9.24 48.42 75.32 35.01 0.00 0.54 0.00 2.05 0.35 3.97 32 I3_AR6 ActiveIntronRegion 0 44.19 2.31 11.38 9.01 27.18 1.41 11.41 7.15 4.89 2.31 16.17 113.26 66.31 5.86 30.44 42.81 14.27 0.00 0.00 0.00 0.19 0.18 1.28 33 I3_AR7 ActiveIntronRegion 1 76.04 0.70 8.23 9.07 24.01 0.00 4.41 13.75 2.82 3.67 13.85 95.81 62.74 4.50 46.33 29.90 14.48 0.00 0.00 0.00 0.00 1.06 0.31 34 I3_SR7 SilentIntronRegion 0 49.16 1.81 8.98 8.07 18.33 0.19 3.54 8.56 1.57 2.02 22.40 74.75 51.21 7.93 38.97 53.06 29.73 0.00 0.00 0.00 2.08 0.45 1.69 35 I3_SR8 SilentIntronRegion 1 9.52 0.00 7.61 6.02 0.00 0.00 2.81 9.36 6.64 2.29 34.87 92.90 96.15 6.36 12.21 139.69 41.67 0.00 0.00 0.00 7.07 7.90 4.28 36 I3_AR10 ActiveIntronRegion 0 38.45 8.13 11.44 1.36 26.31 0.00 3.97 3.46 7.82 2.29 7.73 79.37 46.90 0.00 11.12 26.75 6.60 0.00 0.00 0.00 0.00 0.00 0.00 37 I3_AR11 ActiveIntronRegion 0 53.84 2.16 12.65 4.57 22.75 1.88 8.89 8.73 2.95 1.65 11.68 91.67 50.60 6.98 24.39 40.03 17.06 0.00 0.00 0.00 0.75 0.53 1.51 38 I3_SR10 SilentIntronRegion 1 177.56 2.99 16.75 7.44 24.39 0.00 6.94 7.60 0.36 5.01 17.12 44.63 34.05 5.18 32.58 78.33 23.04 0.00 0.00 0.00 2.71 2.76 2.88 39 I3_AR12 ActiveIntronRegion 0 77.32 3.12 19.11 11.00 32.30 1.72 9.83 7.03 3.23 6.56 15.85 72.03 55.87 4.83 36.91 40.88 19.46 0.00 0.00 0.00 1.97 1.30 1.00 40 ER4a ExonRegion 0 248.42 10.35 84.83 43.70 226.29 40.21 60.08 52.15 50.48 22.65 790.07 1219.21 1092.61 656.51 314.08 766.28 680.05 0.00 0.00 0.00 70.60 100.05 45.58 41 E4a_E5a KnownJunction 0 227.30 18.68 67.50 40.65 116.89 19.70 66.60 58.49 63.34 33.58 835.16 1578.51 1438.54 740.42 328.82 791.76 696.87 0.00 0.00 0.00 103.17 79.97 59.50 42 I4_AR1 ActiveIntronRegion 0 102.58 0.32 3.14 2.64 6.94 0.00 2.06 3.59 0.57 0.61 1.14 16.14 25.06 1.34 15.30 6.49 0.05 0.00 0.00 0.00 0.00 0.32 0.46 43 I4_SR2 SilentIntronRegion 0 27.21 0.19 1.88 2.94 7.90 0.09 1.86 2.31 1.55 1.52 1.93 15.48 14.55 1.36 10.24 11.75 5.86 0.00 0.00 0.00 0.34 0.10 0.75 44 I4_AR6 ActiveIntronRegion 0 39.84 0.00 2.50 5.35 8.03 0.00 1.34 2.18 0.66 1.68 2.05 7.20 9.73 0.37 10.73 18.46 10.98 0.00 0.00 0.00 1.24 1.33 0.48 45 I4_AR9 ActiveIntronRegion 0 45.74 0.00 1.72 7.38 7.33 0.11 3.62 2.66 1.81 2.51 2.46 17.08 11.08 2.89 30.15 10.22 5.11 0.00 0.00 0.00 0.77 0.73 3.08 46 I4_AR10 ActiveIntronRegion 0 92.69 0.00 1.23 5.47 10.49 0.71 1.02 3.54 2.95 3.22 0.53 12.40 14.71 1.77 24.27 10.33 2.89 0.00 0.00 0.00 0.00 0.36 3.80 47 I4_AR11 ActiveIntronRegion 0 58.36 0.00 0.99 4.09 12.61 1.40 1.32 4.94 1.00 0.93 0.00 20.41 16.08 3.25 31.78 15.99 3.30 0.00 0.00 0.00 0.00 2.08 5.17 48 I4_AR12 ActiveIntronRegion 0 44.94 0.00 1.23 2.31 10.70 0.00 1.32 3.46 0.00 0.00 0.00 15.65 9.38 0.00 20.31 11.89 0.51 0.00 0.00 0.00 0.00 2.08 0.00 49 I4_AR13 ActiveIntronRegion 0 42.07 0.00 1.84 1.36 10.70 0.00 0.83 3.46 0.00 0.00 0.00 12.99 7.62 0.00 15.59 10.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 50 I4_SR4 SilentIntronRegion 0 50.83 0.12 6.67 4.06 9.04 0.00 1.62 1.67 0.81 1.57 3.60 15.67 5.85 1.74 22.02 15.02 8.07 0.00 0.00 0.00 0.48 0.55 0.26 51 ER5a ExonRegion 0 235.75 14.66 47.98 31.79 68.42 15.75 28.29 62.78 66.56 26.42 1073.93 1575.65 1099.67 845.74 319.10 966.83 918.77 1.38 0.00 0.00 184.63 123.09 72.70 52 E5_Da NovelBoundary 0 47.93 0.00 13.48 6.96 0.00 0.00 2.08 9.45 1.79 2.47 55.80 110.14 33.44 18.84 36.22 39.22 52.17 0.00 0.00 0.00 8.40 2.69 0.00 53 E5a_E6a KnownJunction 0 319.39 2.57 42.28 31.93 70.54 42.25 19.43 58.82 85.73 30.73 874.48 1434.62 945.88 713.17 292.73 844.48 793.36 0.00 0.00 0.00 216.53 110.16 73.07 54 E5a_E7a KnownJunction 0 13.19 0.00 0.00 1.93 0.00 2.16 0.00 8.63 4.60 0.00 102.13 118.54 82.14 82.29 22.87 150.13 93.97 0.00 0.00 0.00 5.68 9.00 19.63 55 E5a_E8a NovelJunction 0 2.82 0.00 1.80 0.00 0.00 0.00 0.00 2.26 0.00 0.00 14.06 13.80 6.66 7.18 0.00 11.02 13.09 0.00 0.00 0.00 2.72 3.12 0.00 56 I5_SR4 SilentIntronRegion 0 27.64 0.36 1.46 7.28 12.98 1.06 8.05 2.38 1.88 4.18 14.07 94.75 68.53 7.64 13.93 40.87 28.09 0.00 0.00 0.00 2.22 0.31 0.44 57 I5_AR6 ActiveIntronRegion 0 32.57 0.77 0.65 7.63 14.48 0.96 10.85 3.28 3.77 4.52 17.32 58.43 50.73 8.95 24.63 69.63 43.47 0.00 0.00 0.00 3.74 0.63 2.45 58 I5_AR7 ActiveIntronRegion 0 26.98 1.25 0.22 7.22 10.83 0.45 6.01 4.11 2.26 2.10 13.74 66.10 35.24 2.13 18.04 32.79 17.81 0.00 0.00 0.00 1.62 1.79 2.52 59 ER6a ExonRegion 0 132.87 7.16 29.48 32.93 76.57 23.01 25.76 48.31 64.29 23.95 786.30 1129.63 870.52 768.59 287.93 839.19 718.98 1.95 0.00 0.00 196.31 98.49 73.66 60 E6a_E8a KnownJunction 0 77.35 22.17 28.18 50.38 134.89 51.67 41.20 46.54 92.07 25.79 1058.11 1251.56 1025.26 943.62 417.21 1062.88 863.95 0.00 0.00 0.00 205.78 136.98 123.61 61 ER7a ExonRegion 1 38.53 1.50 0.01 3.79 14.52 2.17 7.54 2.29 3.22 0.63 171.64 215.09 172.82 165.53 37.78 212.03 131.94 0.00 0.00 0.00 6.99 13.11 12.94 62 E7a_E8a KnownJunction 1 20.08 0.00 0.00 1.80 6.62 0.00 4.06 4.56 2.63 0.00 208.16 209.92 153.07 163.22 13.60 278.39 129.41 0.00 0.00 0.00 8.28 19.66 3.16 63 ER8a ExonRegion 0 69.30 9.36 31.95 32.29 49.84 26.70 18.78 43.27 64.10 22.16 933.20 1053.50 970.86 908.40 325.47 958.87 838.71 0.00 0.00 0.00 199.15 117.97 83.07 64 E8a_E9a KnownJunction 1 90.16 3.09 34.65 33.63 59.08 38.16 15.99 43.46 57.12 18.02 811.10 1081.70 871.21 991.12 269.24 753.56 591.40 0.00 0.00 0.00 178.17 98.10 60.95 65 ER9a ExonRegion 0 69.27 7.84 28.82 19.34 37.91 18.91 6.43 24.99 48.32 20.81 636.49 1031.50 812.25 841.06 229.26 708.67 616.30 0.00 0.00 0.00 170.14 85.21 45.03 66 E9a_E10a KnownJunction 1 77.79 17.89 27.91 14.05 23.51 2.21 8.48 13.43 34.81 25.98 616.74 1174.73 923.32 802.99 196.06 792.19 746.98 0.00 0.00 0.00 176.07 66.32 54.46 67 I9_SR1 SilentIntronRegion 0 27.07 0.11 4.16 4.47 9.20 0.15 1.81 2.10 0.75 0.42 3.12 29.53 24.92 1.54 3.97 16.67 11.95 0.00 0.00 0.00 0.96 0.91 0.32 68 I9_AR1 ActiveIntronRegion 0 67.66 0.00 10.97 4.49 10.93 0.23 4.51 2.33 0.93 0.00 4.39 48.72 47.60 2.01 4.41 26.96 19.87 0.00 0.00 0.00 1.97 2.09 0.37 69 I9_AR2 ActiveIntronRegion 0 32.52 0.00 2.45 5.45 10.70 0.00 0.00 1.73 0.00 0.00 2.11 7.08 19.19 1.62 0.00 6.75 6.90 0.00 0.00 0.00 4.41 0.00 0.00 70 I9_AR3 ActiveIntronRegion 0 44.24 0.00 4.18 5.47 12.68 0.67 4.86 6.91 1.24 0.17 8.17 34.99 53.40 3.38 8.76 34.01 24.60 0.00 0.00 0.00 2.91 0.76 0.53 71 I9_AR4 ActiveIntronRegion 0 62.56 0.00 4.53 2.04 15.99 0.65 3.05 5.42 0.97 0.43 12.83 41.67 64.01 6.28 3.56 58.13 26.07 0.00 0.00 0.00 1.75 1.21 0.00 72 I9_AR8 ActiveIntronRegion 0 110.30 1.53 2.57 1.72 13.11 0.00 2.61 5.50 3.27 1.57 4.68 29.29 23.66 3.17 25.63 10.96 3.67 0.00 0.00 0.00 0.83 1.18 0.55 73 I9_SR7 SilentIntronRegion 0 28.74 0.83 2.72 1.18 5.69 0.00 1.82 2.94 3.85 1.52 10.43 29.38 27.72 4.74 15.92 19.66 12.90 0.00 0.00 0.00 2.30 1.33 1.14 74 ER10a ExonRegion 0 90.56 10.84 44.39 29.10 78.17 27.55 16.11 54.18 66.54 31.54 1073.38 1078.89 1060.81 1047.58 328.73 1011.38 880.08 0.00 0.00 0.00 173.62 137.40 75.49 75 E10a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.55 1.79 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 76 E10a_E12a KnownJunction 0 60.46 6.31 25.37 21.08 51.61 9.82 14.79 53.31 60.85 27.02 1053.00 1240.75 982.89 878.28 285.43 1169.44 805.42 0.00 0.00 0.00 160.62 108.38 113.53 77 E11a_E12a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.51 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 78 ER11a ExonRegion 0 0.18 0.00 0.00 0.00 0.00 0.00 0.00 1.73 1.70 2.87 0.81 1.62 1.17 1.15 0.48 1.36 0.69 0.00 0.00 0.00 0.09 0.09 0.24 79 ER12a ExonRegion 0 47.52 5.52 31.46 28.60 43.49 18.00 18.48 56.69 70.56 37.11 1140.74 1000.64 1030.83 937.88 298.74 1046.97 918.46 0.00 0.00 0.00 162.11 132.35 89.77 80 E12a_E13a KnownJunction 0 47.71 2.43 44.91 28.63 71.65 21.41 25.00 73.77 70.72 29.01 1145.76 962.26 1240.18 915.18 308.80 1064.76 883.03 0.00 0.00 0.00 192.13 123.45 97.57 81 ER13a ExonRegion 0 50.41 2.12 21.51 17.49 33.55 16.30 10.90 55.67 70.04 26.48 983.66 936.37 876.76 832.11 313.51 941.11 825.66 0.00 0.00 0.00 160.14 67.70 73.72 82 E13a_E14a KnownJunction 0 40.90 5.92 10.02 5.29 28.01 8.69 6.71 22.92 29.02 10.21 555.46 399.58 475.29 463.89 181.96 564.81 479.29 0.00 0.00 0.00 95.20 49.29 12.29 83 ER14a ExonRegion 0 138.28 9.13 45.36 45.14 128.92 23.56 31.99 48.05 41.34 29.61 367.00 693.86 453.00 322.17 233.77 286.22 235.29 0.00 0.00 0.00 34.85 89.99 25.92