Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TCF7 Gene 0 362.04 5.29 11.87 28.20 208.65 23.94 56.50 111.47 38.75 24.05 316.94 44.81 55.19 68.84 26.70 9.76 90.54 25.91 5.25 10.23 83.99 42.33 42.42 2 451490 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3 378564 Transcript 0 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.15 0.00 0.00 0.00 4 321584 Transcript 0 53.79 0.73 0.58 1.36 12.36 6.50 4.65 4.35 1.82 0.00 6.82 1.28 1.39 1.75 0.00 1.07 3.51 4.03 3.43 3.82 0.76 1.47 3.00 5 340914 Transcript 0 0.00 0.00 0.00 0.00 2.34 0.00 0.00 2.94 0.00 0.00 1.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 432532 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 321603 Transcript 0 1.23 0.00 0.00 0.00 4.08 6.66 3.14 2.09 0.91 0.00 19.53 0.00 0.00 3.16 0.00 0.00 5.39 0.00 0.00 0.00 3.60 3.18 0.00 8 334185 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 342854 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 361590 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 395029 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 395023 Transcript 0 85.36 1.64 0.74 4.99 36.86 10.82 10.61 11.01 2.54 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 378560 Transcript 0 5.29 0.01 0.01 0.61 2.86 1.24 1.79 4.56 2.09 0.09 2.74 0.15 0.13 0.54 0.07 1.78 0.44 0.87 0.00 0.04 0.61 0.12 0.10 14 395021 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15 IG40_AR5 ActiveIntergenicRegion 0 15.34 0.19 1.05 2.11 16.02 0.35 3.90 4.80 2.56 1.15 1.37 3.00 0.94 0.21 0.08 0.52 0.00 0.68 0.75 0.66 0.93 1.08 0.00 16 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 ER1b ExonRegion 0 1.83 0.23 0.10 0.18 0.60 1.02 1.37 5.75 2.73 1.55 63.50 7.18 9.45 21.22 2.03 1.61 17.65 3.45 0.00 0.84 19.70 5.98 5.81 18 E1a_E2a KnownJunction 1 7.19 0.00 3.37 5.33 7.81 8.06 1.94 38.16 25.87 15.82 268.28 47.87 53.73 94.06 4.45 7.69 109.77 10.40 0.00 5.31 78.64 30.98 19.29 19 ER2a ExonRegion 0 11.18 0.33 2.54 1.87 9.39 5.34 8.66 34.93 30.86 13.22 318.38 48.53 38.78 93.79 19.14 8.43 81.04 20.19 0.00 8.70 93.38 39.00 23.67 20 E2a_E4b KnownJunction 1 31.41 2.76 3.19 0.00 12.99 4.49 23.85 44.57 30.12 13.24 373.88 37.06 20.13 110.78 14.09 7.86 77.05 29.35 0.00 15.21 106.26 22.04 19.55 21 ER3a ExonRegion 0 80.05 0.00 0.00 2.29 34.84 10.05 8.55 6.33 1.73 0.00 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22 E3a_E4b KnownJunction 0 90.68 3.29 1.48 7.69 38.88 11.58 12.67 15.69 3.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 ER4a ExonRegion 0 5.29 0.01 0.01 0.61 2.86 1.24 1.79 4.56 2.09 0.09 2.74 0.15 0.13 0.54 0.07 1.78 0.44 0.87 0.00 0.04 0.61 0.12 0.10 24 E4_Ab KnownBoundary 0 3.11 0.00 0.00 0.00 3.31 0.00 0.00 11.01 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 ER4b ExonRegion 1 35.25 1.48 2.06 2.13 34.61 14.20 22.19 60.64 43.49 21.77 428.90 33.45 70.58 103.08 11.63 6.69 110.26 28.04 2.70 4.63 111.29 55.77 50.63 26 E4a_E5a KnownJunction 1 31.12 0.00 9.67 6.03 18.51 10.28 20.89 80.42 46.27 24.15 479.44 24.31 148.04 133.32 19.66 8.46 90.88 37.35 0.00 12.27 121.45 152.84 64.71 27 I4_SR6 SilentIntronRegion 0 22.84 0.00 1.11 4.22 10.59 0.87 8.72 10.83 6.96 4.69 13.95 0.85 1.23 5.97 3.76 0.94 8.88 6.11 4.54 4.12 3.80 2.11 10.64 28 I4_SR8 SilentIntronRegion 0 39.66 2.10 6.53 10.82 23.44 4.87 8.95 10.38 9.83 4.06 15.09 4.96 2.74 7.65 1.33 4.11 12.86 8.45 3.38 8.98 7.15 1.84 14.44 29 I4_AR10 ActiveIntronRegion 0 111.41 3.52 7.58 7.54 30.69 4.07 14.41 20.24 12.22 6.06 24.69 4.09 3.03 6.95 5.75 5.13 9.99 11.18 6.06 6.07 5.89 3.07 8.88 30 E5_Aa NovelBoundary 0 222.78 0.00 8.60 9.66 20.29 2.84 16.16 20.50 12.47 5.75 27.06 0.00 0.00 9.54 4.45 8.54 22.63 7.92 7.72 2.68 3.03 0.00 32.95 31 ER5a ExonRegion 0 127.93 0.00 8.43 14.04 57.68 19.58 30.24 90.27 36.89 20.29 441.38 48.20 107.47 101.74 25.13 14.38 129.86 42.60 4.51 7.79 130.54 61.92 32.88 32 E5a_E6a KnownJunction 0 104.02 0.00 8.81 9.56 89.47 5.05 26.85 95.00 40.25 20.52 452.06 74.42 73.37 41.38 14.96 0.00 130.53 23.13 0.00 2.81 89.14 17.57 31.24 33 I5_AR2 ActiveIntronRegion 0 21.39 0.00 7.35 5.27 7.23 0.00 9.30 12.47 6.58 7.69 2.09 0.00 1.27 1.23 8.31 9.40 9.28 4.64 15.24 8.34 1.79 5.52 6.27 34 I5_AR3 ActiveIntronRegion 0 18.34 0.00 4.75 1.99 3.34 0.00 3.53 7.92 8.13 5.45 1.29 0.00 0.00 1.29 5.56 12.51 3.44 2.23 12.61 7.80 7.90 3.91 12.73 35 E6_Aa NovelBoundary 0 6.74 0.00 3.99 2.06 3.48 5.56 10.55 11.75 4.69 2.85 0.00 0.00 0.00 4.77 0.00 0.00 4.58 16.42 4.52 11.89 8.34 0.00 8.37 36 ER6a ExonRegion 0 73.16 3.54 15.58 10.45 73.77 18.80 20.30 85.50 32.44 29.14 377.11 45.21 81.17 68.16 21.96 6.75 129.86 39.77 0.00 5.25 112.79 58.36 51.02 37 E6_Da NovelBoundary 0 3.48 0.00 3.55 2.76 4.33 0.00 1.99 6.70 10.73 0.00 0.00 0.00 12.66 2.47 16.44 4.19 8.70 0.00 0.00 16.81 0.00 0.00 0.00 38 E6a_E7a KnownJunction 0 58.60 0.00 11.00 6.06 39.13 22.03 14.57 64.28 36.95 25.52 257.33 37.96 53.57 40.73 15.95 0.00 74.80 35.73 0.00 0.00 115.96 55.23 32.69 39 ER7a ExonRegion 0 228.60 2.59 5.79 17.00 69.79 15.04 36.65 76.43 39.23 22.09 363.59 39.58 50.38 81.31 32.45 10.03 133.58 34.45 6.82 3.62 106.73 40.21 42.21 40 E7a_E8a KnownJunction 0 206.11 0.00 9.08 22.91 156.54 36.74 36.92 121.95 44.15 27.75 348.72 32.86 27.43 95.47 17.06 0.00 115.10 44.65 0.00 0.00 141.41 27.98 27.06 41 ER8a ExonRegion 0 158.54 3.07 11.19 24.68 156.67 22.52 42.04 120.84 58.00 31.97 444.60 43.06 44.34 100.04 35.79 12.09 121.44 45.21 2.95 9.72 139.64 37.84 55.69 42 E8a_E9a KnownJunction 0 83.42 5.79 14.04 20.84 111.12 40.15 39.26 142.03 72.13 37.28 531.82 54.02 60.06 103.42 48.09 11.02 127.91 24.83 0.00 9.40 162.97 47.03 59.58 43 ER9a ExonRegion 0 93.58 0.38 15.31 17.98 81.91 21.94 30.25 121.23 57.59 29.89 431.90 42.33 47.25 93.73 38.25 12.11 113.88 33.33 6.02 10.97 132.06 41.00 59.58 44 E9a_E10a KnownJunction 0 143.43 2.76 18.75 46.71 150.42 25.44 51.80 183.77 65.25 37.55 410.10 48.17 38.47 69.69 20.03 12.56 133.43 62.80 0.00 8.69 134.43 45.68 63.94 45 ER10a ExonRegion 0 99.43 1.66 15.98 24.75 139.03 18.38 44.56 133.20 52.10 43.04 409.66 37.64 44.89 101.23 23.33 15.35 100.98 47.36 0.00 12.03 118.37 51.75 53.52 46 E10_Da NovelBoundary 0 122.98 3.16 0.00 5.86 25.38 2.67 22.88 17.95 14.35 12.65 10.27 0.00 0.00 4.59 0.00 0.00 17.48 1.62 9.13 8.44 0.00 0.00 8.37 47 E10a_E11a KnownJunction 0 5.63 0.00 5.03 1.83 0.00 11.30 12.90 21.19 10.13 30.65 9.74 6.30 6.33 2.12 0.00 0.00 3.46 43.61 0.00 5.37 2.90 0.00 0.00 48 E10a_E12a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 49 E10a_E13a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 50 E10a_E13b KnownJunction 0 0.00 0.00 0.00 0.00 3.99 0.00 0.00 4.44 0.00 0.00 2.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 51 E10a_E14b KnownJunction 1 93.72 0.00 13.84 16.91 137.44 5.34 32.99 88.39 24.19 7.06 496.13 73.97 39.77 109.48 14.71 20.51 122.95 4.97 0.00 3.13 118.43 74.64 58.47 52 ER11a ExonRegion 0 17.92 2.84 9.45 1.06 15.14 2.01 13.95 30.40 11.74 22.04 18.40 9.01 6.68 5.09 4.65 0.16 9.77 31.74 0.00 9.79 3.92 8.11 1.85 53 E11a_E14b KnownJunction 0 0.00 0.00 7.95 0.00 0.00 0.00 2.25 28.96 10.24 24.01 7.48 0.00 0.00 0.00 4.45 0.00 3.65 10.07 0.00 0.00 0.00 3.12 0.00 54 E11a_E14c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 55 ER11b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 56 I11 Intron 0 56.33 1.87 3.11 6.39 17.89 4.33 12.15 24.99 11.34 9.19 16.73 2.74 3.69 4.81 3.38 1.56 5.63 16.51 3.34 7.81 6.65 1.64 3.85 57 I11_AR1 ActiveIntronRegion 0 56.62 1.88 3.13 6.42 17.98 4.35 12.21 25.12 11.40 9.23 16.81 2.75 3.71 4.83 3.40 1.57 5.66 16.60 3.36 7.85 6.68 1.65 3.87 58 E12_Aa NovelBoundary 0 81.72 0.00 1.69 4.03 45.08 5.22 15.99 26.41 11.14 11.36 9.69 0.00 0.00 0.00 4.45 3.85 14.03 17.91 4.80 5.94 5.68 3.00 11.27 59 ER12a ExonRegion 0 0.00 0.00 0.00 0.04 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.00 0.00 0.00 60 E12_Da NovelBoundary 0 119.13 10.06 4.82 11.22 41.17 0.00 16.12 27.85 15.34 5.40 7.53 5.40 0.00 2.41 15.70 0.00 4.30 17.78 4.80 9.46 5.44 0.00 8.45 61 I12 Intron 0 87.62 2.56 3.13 5.57 31.21 5.24 17.71 27.39 13.68 5.08 15.25 4.89 3.63 5.70 2.95 4.76 10.19 12.50 4.01 9.73 4.79 2.38 7.72 62 I12_AR1 ActiveIntronRegion 0 87.99 2.57 3.15 5.60 31.35 5.27 17.79 27.51 13.74 5.10 15.32 4.91 3.64 5.73 2.96 4.78 10.24 12.56 4.02 9.78 4.80 2.39 7.76 63 E13_Aa NovelBoundary 0 122.10 0.00 4.70 8.32 46.10 2.16 26.67 35.73 30.53 9.08 10.11 6.30 0.00 4.30 9.64 8.20 21.88 18.70 3.58 14.51 11.49 0.00 3.50 64 ER13a ExonRegion 0 107.58 1.46 1.16 2.73 24.72 12.99 9.31 8.69 3.64 0.00 11.11 2.56 2.77 3.50 0.00 2.13 7.02 8.07 6.86 7.64 1.52 2.93 6.00 65 E13_Ab NovelBoundary 0 153.73 3.35 7.86 1.60 26.74 2.90 17.09 28.18 13.19 5.69 12.16 0.00 0.00 0.00 0.00 0.00 0.00 16.33 0.00 6.52 0.00 2.69 4.35 66 ER13b ExonRegion 0 22.11 0.00 1.23 0.76 4.46 0.00 0.00 4.99 0.00 0.00 4.72 0.00 0.00 1.08 0.00 0.00 0.73 1.85 0.00 0.00 0.00 0.00 0.00 67 E13_Db NovelBoundary 0 144.77 0.00 1.69 4.03 33.19 5.45 19.56 31.63 14.87 6.34 37.27 6.30 0.00 0.00 8.90 0.00 9.54 20.81 7.15 3.26 9.02 2.27 11.95 68 ER13c ExonRegion 0 0.00 0.00 0.00 0.00 0.69 0.00 0.00 1.45 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 69 I13 Intron 0 90.94 1.78 7.20 10.68 30.89 5.90 18.19 40.27 14.79 7.99 19.77 2.20 3.39 7.80 1.15 4.34 8.20 16.11 4.65 9.33 9.34 2.74 3.43 70 I13_AR1 ActiveIntronRegion 0 91.46 1.79 7.25 10.75 31.05 5.93 18.29 40.50 14.88 8.04 19.89 2.21 3.41 7.85 1.15 4.37 8.25 16.20 4.68 9.38 9.39 2.76 3.44 71 E14_Ab NovelBoundary 0 40.38 0.00 3.34 1.27 43.80 2.61 3.97 22.47 6.86 7.41 20.22 0.00 0.00 0.00 0.00 3.42 0.00 21.14 4.80 9.40 10.87 0.00 4.35 72 E14_Ac NovelBoundary 0 66.83 0.00 1.54 7.86 19.27 0.00 22.57 66.95 26.97 16.20 40.33 6.00 8.28 7.18 0.00 0.00 29.08 13.68 0.00 0.00 13.28 5.14 3.76 73 ER14a ExonRegion 0 2.12 0.00 0.00 0.00 10.70 7.34 5.30 6.48 1.85 0.00 28.99 0.00 0.00 4.87 0.00 0.00 6.60 0.00 0.00 0.00 7.71 5.21 0.00 74 ER14b ExonRegion 0 1.23 0.00 0.00 0.00 4.08 6.66 3.14 2.09 0.91 0.00 19.53 0.00 0.00 3.16 0.00 0.00 5.39 0.00 0.00 0.00 3.60 3.18 0.00 75 ER14c ExonRegion 0 208.48 0.00 18.69 19.08 153.86 3.67 39.39 118.83 36.44 30.97 547.49 60.61 52.76 106.38 32.64 16.35 127.08 18.48 0.00 4.26 143.24 87.51 74.88 76 ER14d ExonRegion 0 385.41 3.26 11.02 28.93 153.72 24.02 53.92 135.91 47.20 27.87 469.80 58.39 77.55 98.51 24.49 14.32 136.64 41.36 6.37 14.65 135.76 51.99 58.36 77 E14_Dc KnownBoundary 1 141.51 11.31 12.06 37.02 337.86 38.27 84.22 120.39 60.13 29.66 376.83 53.87 74.02 123.20 13.35 11.36 123.89 21.06 4.05 17.71 153.33 55.36 47.29 78 ER14e ExonRegion 0 711.16 10.75 19.77 53.63 429.81 43.18 110.28 185.06 57.10 36.94 431.33 68.75 81.11 89.99 44.50 14.54 123.52 33.07 9.50 17.24 108.87 61.26 63.97 79 E14_Dd KnownBoundary 0 1296.53 3.03 4.35 21.01 370.29 24.25 82.45 79.19 32.49 15.66 184.78 83.58 96.26 81.23 37.95 3.42 105.38 4.02 4.52 0.00 28.97 60.44 30.82 80 ER14f ExonRegion 1 452.87 6.76 17.74 29.10 185.62 12.30 32.71 110.41 33.51 17.60 183.11 48.97 39.85 37.03 19.65 4.10 41.02 3.20 3.05 3.37 15.29 46.87 23.05 81 ER14g ExonRegion 0 30.19 0.00 2.90 3.80 25.21 0.00 0.63 8.28 3.19 1.69 4.78 5.92 7.65 0.09 1.37 0.00 0.00 1.75 0.00 2.24 0.00 3.51 1.24 82 IG41 Intergenic 0 28.42 16.19 11.91 14.72 22.43 8.73 16.30 18.39 23.46 9.42 4.97 7.52 8.36 1.99 3.69 5.42 7.78 14.47 8.43 14.27 4.78 6.03 11.15 83 IG41_AR1 ActiveIntergenicRegion 0 15.52 0.00 3.27 1.82 4.01 0.00 7.94 0.00 0.00 0.96 0.00 0.00 0.00 0.00 0.00 0.00 2.75 0.00 0.00 0.00 0.00 0.00 0.98 84 IG41_SR1 SilentIntergenicRegion 0 70.08 7.71 5.79 7.16 29.75 4.30 14.68 15.23 10.76 4.39 3.30 6.32 4.48 1.08 1.63 1.59 6.78 5.79 2.10 3.76 2.99 2.62 7.37 85 IG41_AR2 ActiveIntergenicRegion 0 35.12 26.42 18.95 20.53 33.42 13.82 21.60 28.44 29.63 13.76 6.68 7.27 7.34 2.96 4.99 7.64 8.57 25.35 14.36 17.46 8.32 9.08 13.22 86 IG41_SR2 SilentIntergenicRegion 0 31.33 17.83 10.39 15.98 25.76 12.19 14.72 21.85 26.95 11.46 6.06 9.34 9.45 1.79 2.90 6.47 7.29 15.01 9.51 15.29 4.54 7.58 9.62 87 IG41_AR3 ActiveIntergenicRegion 0 32.46 14.91 11.56 14.88 29.44 12.10 17.86 16.69 30.44 9.63 8.30 9.43 11.13 2.16 4.67 5.12 9.67 23.64 9.92 21.28 6.52 7.37 11.42 88 IG41_SR3 SilentIntergenicRegion 0 12.47 9.08 5.95 9.70 14.81 3.76 13.75 15.53 15.55 6.80 5.00 6.57 3.07 3.69 4.50 6.07 7.45 7.54 3.31 13.55 5.41 5.41 7.94 89 IG41_AR4 ActiveIntergenicRegion 0 4.33 8.24 4.42 4.27 8.86 5.49 11.22 8.32 20.59 5.13 3.15 7.69 4.61 1.84 4.40 3.70 8.65 9.70 5.51 7.39 5.58 3.15 8.34 90 IG41_SR4 SilentIntergenicRegion 0 15.38 14.56 12.93 15.40 14.02 5.70 15.97 13.90 22.97 8.64 3.61 7.02 11.22 1.44 3.57 5.16 7.30 10.51 7.55 15.29 2.73 4.72 13.07 91 IG41_SR5 SilentIntergenicRegion 0 12.93 11.18 6.13 11.78 7.35 7.28 6.06 11.01 13.49 4.18 1.77 5.44 2.36 1.63 2.87 1.82 9.07 6.46 2.92 7.80 2.69 3.82 8.97