Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC145146.2 Gene 0 73.11 102.71 65.55 83.08 121.35 83.92 98.89 130.78 116.12 120.32 25.41 17.20 25.35 33.41 50.85 34.48 25.74 86.24 76.07 94.73 34.76 18.84 22.01 2 355132 Transcript 0 0.11 0.00 0.00 0.07 0.00 0.00 0.00 0.09 0.00 0.06 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3 380759 Transcript 0 72.65 118.67 94.46 109.82 125.07 80.93 105.01 195.85 151.23 179.74 44.35 22.77 38.11 52.62 71.93 43.43 37.01 121.04 100.33 129.21 49.47 28.71 28.67 4 ER1a ExonRegion 0 3.16 0.61 0.00 0.00 0.00 0.02 1.23 0.00 0.06 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.00 0.00 0.00 5 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 ER2a ExonRegion 0 0.75 4.73 0.00 0.00 7.24 3.02 13.98 0.00 1.24 0.03 0.00 0.00 0.00 0.00 0.00 7.08 0.00 1.85 0.00 0.00 0.00 0.00 0.00 7 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 ER3a ExonRegion 0 3.80 2.48 0.00 0.00 2.80 2.32 7.67 0.00 0.87 1.11 0.63 0.00 0.00 0.44 1.34 9.14 3.24 0.28 3.12 0.00 0.00 1.32 0.00 9 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 E3a_E8a NovelJunction 0 0.00 5.79 9.43 1.27 0.00 0.00 9.54 0.00 2.86 3.17 4.21 0.00 0.00 2.24 0.00 11.36 20.85 4.73 14.21 0.00 3.15 0.00 0.00 11 ER4a ExonRegion 0 12.72 25.73 0.07 0.01 10.05 10.97 19.51 0.05 0.00 0.00 0.00 1.93 0.00 0.00 0.00 0.00 0.00 1.42 0.86 0.00 0.00 0.03 0.00 12 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 ER5a ExonRegion 0 13.15 46.20 11.71 9.17 24.90 44.23 61.67 12.20 6.76 10.17 2.39 0.00 4.19 9.86 7.30 5.94 1.40 38.59 18.66 13.47 1.09 2.40 2.90 14 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 ER6a ExonRegion 0 15.46 32.01 48.22 44.48 45.07 79.83 63.83 91.81 49.74 98.12 27.04 7.40 10.80 41.03 50.40 19.65 22.03 76.55 59.41 73.03 23.66 14.01 10.66 16 E6a_E8a KnownJunction 0 20.97 80.97 103.49 102.72 62.31 48.44 71.32 210.38 101.85 208.99 68.12 25.21 39.93 75.58 77.51 34.52 44.51 120.01 95.06 130.90 48.00 32.82 22.19 17 ER7a ExonRegion 0 0.11 0.00 0.00 0.07 0.00 0.00 0.00 0.09 0.00 0.06 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 I7_AR1 ActiveIntronRegion 0 10.63 30.03 11.68 45.45 6.52 5.30 10.48 14.51 35.03 11.45 1.18 0.00 3.78 2.04 5.17 4.98 2.01 13.71 22.79 11.01 2.35 5.39 4.02 19 I7_AR3 ActiveIntronRegion 0 2.35 2.32 4.19 4.66 0.00 0.00 2.87 0.00 2.81 3.95 0.00 0.00 16.02 1.85 0.00 0.00 0.00 2.10 0.00 0.00 0.00 0.00 0.00 20 E8_Aa NovelBoundary 1 291.61 341.19 128.79 296.20 307.64 155.71 209.02 302.51 338.34 249.39 24.80 18.46 54.87 9.83 49.69 58.19 26.27 58.86 121.70 162.35 39.54 22.47 37.99 21 ER8a ExonRegion 0 181.80 245.78 156.92 206.07 301.74 185.59 221.99 315.84 291.60 286.05 58.19 43.10 63.40 73.61 116.96 81.15 60.21 196.44 178.77 226.37 84.61 44.71 54.75 22 E8_Da NovelBoundary 0 1397.88 1509.93 2469.07 2838.47 1307.22 970.75 1919.89 3104.66 2677.95 2460.90 651.06 453.15 552.72 340.52 1003.77 2289.14 1613.65 3264.16 1542.73 1770.76 898.92 767.68 2375.14 23 I8_AR2 ActiveIntronRegion 0 10.20 21.91 0.95 8.16 24.65 19.28 19.05 11.86 3.84 5.00 3.32 2.58 5.55 7.01 12.19 5.26 6.32 6.91 18.54 24.80 5.80 4.15 4.40 24 I8_SR2 SilentIntronRegion 0 2.57 13.44 16.34 35.29 25.15 25.82 20.62 39.80 20.56 32.89 2.88 5.79 4.46 5.01 8.18 10.00 1.87 21.31 15.55 25.98 4.16 5.05 4.92 25 I8_SR3 SilentIntronRegion 0 13.49 17.25 33.08 45.04 37.92 25.00 31.28 37.47 32.00 41.19 2.53 3.32 4.58 4.35 8.37 6.80 8.70 23.58 12.79 25.64 6.45 2.88 2.28 26 I8_SR4 SilentIntronRegion 0 6.45 10.96 12.10 20.95 22.66 13.36 22.76 25.07 14.08 18.18 2.14 5.22 3.13 2.01 6.07 5.60 2.04 8.44 11.09 18.41 2.27 2.61 3.03 27 I8_AR5 ActiveIntronRegion 0 16.57 10.36 0.00 0.29 39.78 5.04 3.72 0.23 0.12 0.79 3.53 0.00 3.25 2.50 2.34 2.57 3.05 0.00 20.77 5.97 0.00 3.77 10.45 28 I8_AR6 ActiveIntronRegion 0 19.48 54.62 9.31 23.85 23.34 17.70 19.12 32.20 14.58 16.29 1.59 1.55 1.91 0.98 4.80 2.65 1.92 6.21 6.12 11.93 1.70 3.23 2.28 29 I8_AR9 ActiveIntronRegion 0 0.51 45.58 3.89 7.24 32.85 23.14 24.15 18.83 5.20 9.29 3.47 8.96 0.32 23.75 15.91 9.94 21.85 2.04 0.00 8.22 11.55 8.41 6.89 30 I8_AR10 ActiveIntronRegion 0 3.17 51.04 4.39 5.47 30.86 15.38 24.28 19.21 5.78 10.99 8.32 14.38 13.46 29.42 28.68 27.56 34.18 1.85 0.00 10.16 12.44 11.66 9.28 31 I8_AR11 ActiveIntronRegion 0 19.74 125.98 41.68 62.68 184.59 154.77 110.30 136.94 72.53 141.24 63.33 123.71 127.92 95.50 96.90 109.30 119.70 34.23 37.67 66.17 65.95 28.47 57.37 32 I8_AR12 ActiveIntronRegion 0 9.36 50.80 35.65 60.26 82.54 74.45 52.93 94.90 48.91 92.11 32.45 54.20 51.59 45.57 56.52 54.81 48.50 18.62 18.25 36.70 36.15 17.19 31.46 33 I8_AR13 ActiveIntronRegion 0 28.33 224.68 68.72 114.97 293.85 275.96 221.78 174.49 102.86 131.45 39.70 182.95 175.34 106.90 103.78 97.70 79.56 34.63 38.80 95.20 46.28 29.54 82.08 34 I8_AR14 ActiveIntronRegion 0 45.92 338.99 101.81 172.26 305.04 348.66 242.86 272.87 181.72 254.61 57.06 133.27 152.94 108.32 94.73 145.89 103.19 49.89 46.40 122.20 58.45 42.49 86.69 35 I8_AR15 ActiveIntronRegion 0 60.28 329.58 81.17 158.38 278.74 229.54 144.40 246.27 177.52 255.52 71.12 106.15 118.71 97.90 117.05 137.03 112.46 50.40 43.06 108.07 39.13 36.07 109.26 36 I8_SR9 SilentIntronRegion 0 34.31 205.57 60.49 134.69 178.29 154.10 113.37 220.94 129.84 198.39 57.57 93.42 93.28 92.91 83.18 121.24 90.04 49.33 35.73 108.20 52.10 30.80 79.41 37 I8_AR16 ActiveIntronRegion 1 78.74 120.55 88.27 124.41 213.21 163.92 106.81 184.87 116.07 193.14 80.29 137.17 81.00 97.15 113.85 99.03 88.76 34.92 37.81 142.31 33.92 128.02 70.98 38 I8_SR10 SilentIntronRegion 0 13.05 9.12 3.07 4.55 18.00 6.17 7.42 8.66 10.32 10.54 5.42 4.42 6.65 9.10 15.88 13.33 7.40 12.37 12.50 3.58 1.24 2.34 9.87 39 I8_AR17 ActiveIntronRegion 0 24.86 67.93 62.09 77.22 162.10 130.93 79.80 105.93 83.06 104.08 62.13 128.28 128.82 120.89 72.11 67.98 75.50 37.26 43.32 78.26 27.93 52.16 62.63 40 I8_SR11 SilentIntronRegion 0 8.08 28.19 1.88 3.48 39.92 26.07 21.59 3.53 0.63 1.76 20.09 60.02 91.85 65.55 44.45 55.56 33.17 4.14 12.11 39.79 19.10 17.28 24.39 41 I8 Intron 0 3.97 17.42 2.31 3.60 9.36 5.76 5.64 9.01 8.58 13.52 4.21 5.06 8.70 4.25 8.95 9.65 7.70 5.73 5.97 23.41 5.36 2.11 4.62 42 I8_SR1 SilentIntronRegion 0 4.05 17.77 2.36 3.68 9.53 5.88 5.75 9.16 8.76 13.78 4.30 5.16 8.88 4.29 9.04 9.84 7.85 5.85 6.10 23.85 5.45 2.16 4.71 43 ER9a ExonRegion 0 15.18 29.27 22.96 20.68 11.17 8.77 21.70 61.32 60.25 44.18 6.72 0.00 11.01 8.69 21.32 14.60 6.31 46.68 27.14 30.34 15.81 8.61 9.07