Order	SeqName	SeqType	IsAE	NBL01_MYCN	NBL05_MYCN	NBL09_MYCN	NBL10_MYCN	NBL02	NBL03	NBL04	NBL06	NBL07	NBL08	NBL11_Rel2	NBL11_Rem1	NBL11_Rel1	NBL12_Rel_Left	NBL12_Rel_Right	NBL13_Rel_Left	NBL13_Rel_Right	NBL14_MYCN_Met	NBL14_MYCN_Pri	NBL15_MYCN_Rel1	SKP01	SKP02	SKP03
1	PAPD4	Gene	0	206.08	117.13	73.33	142.24	169.88	99.12	108.88	120.55	104.47	138.10	276.93	403.57	438.04	209.88	205.75	237.14	206.00	52.06	38.46	81.72	92.45	170.51	95.19
2	423041	Transcript	0	43.49	54.92	19.81	47.45	85.48	48.55	32.42	18.77	33.22	37.69	225.43	168.20	231.64	124.02	81.22	149.02	143.34	14.76	18.92	38.35	79.01	98.52	26.63
3	428308	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
4	453514	Transcript	1	22.04	40.23	24.26	29.99	31.87	46.72	40.62	49.15	57.38	84.14	123.43	69.24	115.24	129.31	64.94	184.66	148.95	82.34	37.70	72.91	161.38	76.36	95.85
5	296783	Transcript	1	6.67	0.00	1.09	2.06	4.07	0.00	4.20	2.01	1.33	7.49	73.07	12.75	25.32	29.25	5.32	31.70	37.96	6.76	0.00	5.82	9.08	0.00	3.41
6	ER1a	ExonRegion	0	17.84	18.37	15.50	14.89	22.00	30.90	29.53	17.45	20.33	32.15	41.81	1.12	4.23	39.74	17.35	85.94	47.58	29.95	13.03	27.40	39.94	31.74	58.37
7	E1_Ab	KnownBoundary	0	29.93	3.22	3.99	0.00	21.73	21.29	19.70	10.06	10.85	25.73	59.33	0.00	12.66	33.20	16.32	35.03	45.63	13.72	4.80	14.51	64.80	0.00	23.47
8	ER1b	ExonRegion	1	12.80	10.75	20.36	18.58	19.57	15.00	17.71	34.47	33.84	53.54	121.86	14.08	23.51	89.59	41.94	187.39	117.51	88.71	18.70	53.22	104.70	43.88	91.05
9	E1_Da	KnownBoundary	0	13.71	2.50	7.57	10.59	12.90	21.81	16.34	24.77	36.54	29.82	101.50	53.42	51.46	101.18	51.05	119.28	101.36	65.12	31.15	16.87	91.74	26.15	49.94
10	E1a_E1c	KnownJunction	0	0.00	0.00	0.00	0.00	3.90	2.84	0.00	2.30	2.69	6.12	27.01	18.16	6.82	21.72	0.00	25.12	18.61	4.06	0.00	0.00	2.90	2.33	0.00
11	ER1c	ExonRegion	1	11.39	16.03	14.06	14.31	20.15	44.33	50.78	36.35	39.23	53.50	125.92	39.09	48.42	101.41	58.20	154.73	154.85	75.65	25.20	44.05	120.04	33.52	59.25
12	E1_Db	KnownBoundary	0	6.89	34.27	19.04	17.51	47.54	80.81	90.84	38.40	28.24	64.31	68.02	17.41	26.78	99.95	54.14	172.95	165.12	58.95	17.32	70.56	118.55	40.84	83.91
13	E1b_E1c	KnownJunction	0	6.67	0.00	1.09	2.06	4.07	0.00	4.20	2.01	1.33	7.49	73.07	12.75	25.32	29.25	5.32	31.70	37.96	6.76	0.00	5.82	9.08	0.00	3.41
14	ER1d	ExonRegion	0	22.04	40.23	24.26	29.99	31.87	46.72	40.62	49.15	57.38	84.14	123.43	69.24	115.24	129.31	64.94	184.66	148.95	82.34	37.70	72.91	161.38	76.36	95.85
15	E1_Ac	KnownBoundary	1	51.71	61.96	28.77	49.11	24.70	49.23	47.52	64.81	62.09	112.50	180.57	179.91	277.58	171.94	73.55	201.83	182.89	75.90	64.57	88.97	180.70	101.16	146.48
16	ER1e	ExonRegion	0	31.68	39.65	21.50	37.48	39.30	27.36	52.40	46.53	60.25	96.05	335.51	197.19	303.09	237.35	107.94	250.73	267.73	77.35	33.99	78.96	175.47	101.08	120.49
17	E1_Dc	NovelBoundary	0	7.56	12.70	9.49	16.18	25.30	0.00	3.49	40.33	34.66	41.90	12.63	42.61	60.06	7.36	37.46	27.86	50.86	9.78	16.66	33.62	11.55	2.94	13.91
18	E1c_E2a	KnownJunction	0	24.30	29.67	23.89	28.93	47.54	36.23	50.26	42.35	67.13	76.42	291.97	171.96	293.00	188.36	89.00	215.67	168.30	45.52	17.51	77.47	182.06	106.79	96.97
19	I1	Intron	1	37.04	35.85	17.77	32.50	28.90	7.31	38.08	40.06	26.20	40.25	11.99	61.17	99.35	11.20	31.90	33.15	30.91	8.54	8.30	27.88	6.69	6.11	16.82
20	I1_SR1	SilentIntronRegion	1	28.42	24.66	17.13	31.92	26.18	6.74	35.61	39.17	29.96	43.53	10.53	68.37	114.04	13.43	34.65	31.57	32.04	6.73	5.90	30.81	4.66	5.34	12.79
21	I1_AR1	ActiveIntronRegion	1	51.45	66.01	23.10	33.99	41.16	9.49	49.68	53.34	27.29	43.96	9.44	61.32	93.33	11.37	43.94	35.45	37.33	8.88	11.06	30.28	8.24	4.03	21.51
22	I1_SR2	SilentIntronRegion	1	75.97	86.02	25.15	30.39	38.61	4.22	34.10	68.96	32.43	56.44	12.15	66.08	78.08	12.29	43.41	36.21	28.38	17.62	14.20	23.39	6.25	5.36	34.57
23	I1_AR2	ActiveIntronRegion	0	52.12	35.75	19.64	38.84	28.53	9.99	39.17	37.19	20.22	36.36	16.33	40.08	77.75	7.67	24.64	40.58	33.94	12.43	12.72	23.46	14.35	7.20	22.10
24	I1_SR4	SilentIntronRegion	0	12.85	17.82	12.57	26.95	10.60	2.29	34.77	17.89	12.91	22.48	17.30	43.39	83.90	10.14	18.03	23.71	30.31	2.87	13.68	21.59	3.89	5.06	10.11
25	I1_AR4	ActiveIntronRegion	0	19.31	23.51	12.41	32.10	27.25	5.69	37.72	26.43	21.46	29.79	11.94	60.88	100.87	8.59	19.95	25.17	22.95	5.78	2.82	28.66	2.65	6.62	9.95
26	I1_AR5	ActiveIntronRegion	1	20.67	20.46	12.22	26.29	22.94	7.65	36.39	36.61	30.77	41.01	10.90	106.43	141.96	12.93	27.39	44.82	14.79	9.69	7.25	25.95	1.02	14.63	18.52
27	I1_SR5	SilentIntronRegion	0	21.01	7.99	3.06	10.92	18.86	7.40	19.21	20.08	21.92	24.55	14.39	48.67	68.03	8.06	19.12	19.23	19.96	3.76	2.49	18.25	7.86	13.68	8.95
28	E2_Aa	NovelBoundary	0	17.56	5.00	22.41	40.95	24.87	4.32	39.17	35.69	37.47	47.73	13.53	61.82	163.30	22.13	39.43	15.55	52.55	4.06	7.15	32.85	2.53	8.39	8.02
29	ER2a	ExonRegion	0	63.48	65.07	41.75	59.26	117.55	76.84	95.83	87.84	106.63	133.23	445.44	445.96	727.01	363.76	168.44	474.69	334.49	86.16	58.36	113.74	172.21	194.49	179.98
30	E2_Da	NovelBoundary	0	44.16	18.68	27.85	36.76	8.49	0.00	45.44	26.37	26.36	24.42	14.53	42.31	48.54	2.47	14.83	11.11	55.35	5.89	4.80	29.53	10.69	0.00	32.35
31	E2a_E3a	KnownJunction	0	35.12	78.54	29.06	70.89	118.00	68.43	50.39	85.15	107.29	122.17	616.10	580.84	1105.93	313.56	199.02	417.50	513.32	77.48	98.45	115.56	232.10	138.69	140.93
32	E3_Aa	NovelBoundary	0	27.78	27.76	29.04	40.89	17.32	0.00	38.02	17.62	9.66	18.99	2.58	35.71	90.25	0.00	13.97	31.36	25.15	0.00	4.71	11.89	2.97	2.76	0.00
33	ER3a	ExonRegion	0	57.05	81.34	37.41	74.79	107.86	48.74	79.85	87.75	102.29	120.08	482.02	573.61	852.65	377.84	213.31	407.51	389.54	81.30	57.05	106.57	199.93	165.52	154.37
34	E3a_E4a	KnownJunction	1	77.50	63.41	51.57	108.61	115.45	25.21	65.32	126.14	127.05	112.04	485.02	574.84	823.97	388.43	119.54	279.07	350.35	73.95	31.34	110.64	173.78	156.15	104.40
35	E3a_E5a	NovelJunction	0	0.00	3.35	1.63	5.39	6.79	4.88	5.83	4.85	7.41	4.14	0.00	6.30	6.33	7.42	0.00	0.00	0.00	0.00	7.81	3.26	11.86	0.00	0.00
36	I3_AR1	ActiveIntronRegion	0	23.50	17.39	9.98	28.32	25.59	4.84	31.33	16.83	15.16	23.84	10.94	51.62	85.66	5.19	16.62	13.37	29.64	2.79	8.37	26.90	2.53	5.76	14.09
37	I3_SR1	SilentIntronRegion	0	31.55	9.36	7.07	8.49	25.95	15.57	43.75	9.85	5.74	7.09	0.31	48.43	61.73	3.21	24.90	9.47	17.50	0.00	4.59	14.79	6.61	1.07	3.48
38	I3_AR3	ActiveIntronRegion	0	18.91	12.19	7.23	20.90	9.99	1.45	20.21	13.98	13.53	12.17	3.49	36.06	82.99	3.58	14.20	16.47	10.08	2.50	4.68	22.38	1.74	4.01	9.96
39	E4_Aa	NovelBoundary	0	34.45	14.41	26.34	48.78	22.67	2.61	22.48	27.03	25.23	39.41	15.42	55.52	97.56	0.00	28.06	24.18	17.58	5.06	13.65	40.52	19.03	0.00	12.98
40	ER4a	ExonRegion	0	138.46	110.18	51.24	98.56	144.09	74.75	119.37	104.16	91.12	111.99	441.69	703.81	957.52	358.49	182.16	424.49	358.98	62.61	51.47	127.69	155.76	182.80	160.08
41	E4_Da	NovelBoundary	0	14.22	11.25	16.17	30.13	35.99	0.00	37.76	29.49	17.71	29.09	5.37	171.06	75.32	0.00	17.80	48.36	18.61	6.51	0.00	32.21	0.00	14.08	23.13
42	E4a_E5a	KnownJunction	1	130.62	85.51	50.65	71.12	117.91	65.02	108.68	77.67	54.14	80.99	357.35	608.45	673.49	330.51	126.83	266.43	267.51	39.84	25.60	107.25	105.33	139.55	130.52
43	I4_AR1	ActiveIntronRegion	0	13.45	20.47	9.99	18.29	18.91	6.15	28.53	18.19	15.59	15.08	6.48	60.12	72.82	2.98	10.43	22.54	11.65	1.66	2.80	15.01	1.56	9.56	9.85
44	I4_SR1	SilentIntronRegion	0	12.10	18.54	2.16	9.28	20.24	4.40	23.04	9.37	13.09	12.94	4.12	42.73	71.62	5.37	10.51	7.03	9.44	1.41	1.91	13.62	1.71	5.66	1.66
45	E5_Aa	NovelBoundary	0	60.83	42.69	7.92	19.01	42.53	5.17	54.89	12.28	5.30	25.95	2.32	55.97	114.60	4.83	17.92	23.33	29.73	1.70	4.14	28.00	8.28	13.35	12.29
46	ER5a	ExonRegion	0	139.75	132.94	47.31	82.45	119.71	53.77	79.26	92.31	77.36	112.50	392.31	601.16	743.43	250.64	137.27	305.84	328.17	41.66	33.63	100.89	124.00	157.15	112.66
47	E5a_E6a	KnownJunction	0	125.65	132.02	56.36	108.18	128.78	49.18	88.81	89.54	106.22	120.53	354.56	824.82	956.92	228.03	155.88	306.76	279.01	29.06	56.38	64.75	108.11	178.43	123.35
48	ER6a	ExonRegion	0	109.71	120.36	52.45	91.21	129.22	68.81	86.99	73.18	79.93	109.75	364.44	522.97	647.53	287.40	187.16	319.21	302.89	32.44	30.09	73.27	110.09	156.35	122.38
49	E6_Da	NovelBoundary	0	14.08	16.84	2.96	9.29	11.80	15.10	10.20	18.85	20.54	8.57	14.79	50.42	6.66	7.06	0.00	3.76	30.20	0.00	0.00	41.61	5.68	20.51	15.19
50	E6a_E7a	KnownJunction	0	138.84	59.73	30.25	62.60	77.50	54.46	38.86	34.67	39.79	71.88	198.21	204.37	230.02	129.50	105.69	200.03	178.59	21.56	17.13	49.22	66.29	104.53	48.40
51	E6a_E7b	KnownJunction	0	43.49	54.92	19.81	47.45	85.48	48.55	32.42	18.77	33.22	37.69	225.43	168.20	231.64	124.02	81.22	149.02	143.34	14.76	18.92	38.35	79.01	98.52	26.63
52	I6	Intron	1	10.18	20.01	3.37	14.57	9.77	13.95	23.61	11.51	14.95	14.39	12.21	90.16	70.42	15.26	6.89	14.94	15.60	3.85	3.42	20.57	5.21	24.44	11.61
53	I6_SR1	SilentIntronRegion	0	6.68	8.90	2.60	8.27	4.36	13.63	23.99	7.33	10.12	9.92	10.82	55.38	35.11	14.69	4.88	13.31	11.09	1.88	2.59	13.20	2.47	18.24	9.57
54	I6_AR1	ActiveIntronRegion	1	12.82	28.29	3.96	19.29	13.81	14.26	23.46	14.64	18.58	17.76	13.30	116.24	96.77	15.77	8.40	16.22	19.01	5.31	4.05	26.10	7.25	29.14	13.18
55	E7_Ab	NovelBoundary	0	104.02	127.35	21.44	61.96	39.39	39.01	75.92	46.91	31.13	64.25	125.72	206.47	360.53	98.77	75.78	151.07	145.02	23.55	15.62	57.01	40.46	94.48	56.77
56	ER7a	ExonRegion	0	110.87	89.16	32.14	63.22	67.72	61.36	50.51	33.11	43.70	74.73	232.54	234.46	330.47	163.91	107.57	221.77	202.37	24.87	21.56	56.46	74.25	115.07	61.67
57	ER7b	ExonRegion	0	144.76	138.28	42.80	88.81	146.15	116.59	83.33	62.72	66.28	93.35	437.68	450.99	577.73	271.65	152.45	324.37	331.04	46.36	26.35	69.63	146.75	173.85	95.75
58	E7_Da	NovelBoundary	0	26.82	40.19	12.18	11.32	21.56	14.93	43.24	4.23	25.00	30.14	40.27	102.48	153.89	46.27	23.61	47.08	25.34	7.42	13.08	9.52	8.03	65.58	19.38
59	E7a_E8a	KnownJunction	0	168.92	82.55	51.21	83.71	193.21	137.53	75.30	66.25	67.36	66.51	358.67	396.73	504.51	302.43	144.39	285.65	286.86	49.87	12.71	63.85	99.03	82.79	138.12
60	I7	Intron	0	25.47	33.00	9.59	37.18	20.24	18.04	32.75	30.19	27.78	27.54	18.03	98.58	108.46	19.84	16.44	29.71	25.10	8.09	10.24	29.78	7.25	43.61	20.14
61	I7_AR1	ActiveIntronRegion	0	2.62	28.91	2.26	15.07	8.27	10.77	14.32	5.57	7.96	10.57	19.72	65.81	74.70	13.61	14.03	10.11	23.47	2.55	0.98	17.10	9.54	19.32	10.89
62	I7_SR1	SilentIntronRegion	1	8.39	12.37	7.11	14.50	11.42	14.24	29.70	14.99	15.40	12.63	8.42	80.80	70.97	14.99	8.84	17.31	14.99	5.00	1.78	21.57	3.43	26.16	10.96
63	I7_AR2	ActiveIntronRegion	0	42.84	48.23	13.11	58.25	29.29	22.48	39.44	46.74	41.19	41.99	24.26	119.08	142.72	24.75	22.29	43.09	32.50	11.58	18.33	38.59	9.34	61.64	28.76
64	E8_Aa	NovelBoundary	1	53.71	74.39	16.50	59.80	57.56	47.42	36.70	44.36	56.05	41.34	19.43	129.49	207.29	30.61	10.01	64.34	45.07	28.52	12.99	37.07	8.59	41.58	27.91
65	ER8a	ExonRegion	0	174.52	180.55	55.61	98.91	152.48	105.60	92.75	76.27	74.05	102.22	402.93	456.33	611.25	312.71	217.06	403.06	285.76	75.81	24.30	79.48	119.19	140.31	136.18
66	E8a_E9a	KnownJunction	0	204.26	186.81	73.39	141.77	93.21	101.02	110.05	97.96	94.85	155.13	476.28	547.83	627.72	331.22	286.55	549.60	320.52	96.13	39.62	120.10	169.70	246.65	210.25
67	ER9a	ExonRegion	0	209.10	134.69	81.32	182.20	154.26	99.43	121.37	137.40	121.84	146.98	622.09	536.57	636.69	362.58	272.42	544.25	445.88	106.74	87.08	127.82	201.65	345.13	187.37
68	E9a_E10a	KnownJunction	0	250.64	129.65	92.81	187.32	206.62	142.30	119.68	140.80	138.08	148.36	755.93	559.68	552.24	397.61	264.05	483.21	627.02	97.21	73.51	110.38	226.85	227.05	174.99
69	E9a_E11a	NovelJunction	0	10.52	2.96	0.00	0.00	12.90	0.00	0.00	0.00	0.00	1.18	7.69	5.70	12.99	2.35	4.45	8.03	13.28	6.18	0.00	9.08	2.90	3.12	11.44
70	ER10a	ExonRegion	0	241.66	131.27	73.85	145.83	185.66	125.91	108.55	145.54	122.27	154.41	589.16	464.90	533.50	319.31	253.67	441.35	453.35	108.89	61.36	114.17	172.09	231.80	172.56
71	E10a_E11a	KnownJunction	0	428.15	147.47	73.00	131.42	294.06	197.05	126.39	145.16	95.20	135.87	709.65	510.02	656.61	417.39	340.94	705.63	551.94	134.43	124.71	126.49	232.65	500.28	267.02
72	E10a_E12a	NovelJunction	0	28.30	41.31	18.42	57.77	51.44	38.61	20.62	29.82	35.53	28.45	35.11	25.21	26.46	9.89	15.20	23.58	21.69	8.12	24.94	18.34	10.13	2.45	4.35
73	I10_AR2	ActiveIntronRegion	0	10.58	18.04	4.59	15.12	9.09	9.01	22.06	9.93	7.69	13.08	6.88	33.87	33.02	10.12	8.11	12.94	12.14	2.04	4.48	11.11	2.79	11.96	12.64
74	I10_SR3	SilentIntronRegion	0	2.12	18.30	7.58	10.28	7.78	3.67	25.28	2.83	3.71	10.53	1.93	45.66	33.26	1.92	2.64	7.03	8.10	0.00	1.45	11.03	2.20	11.18	4.00
75	I10_SR4	SilentIntronRegion	0	25.65	18.54	10.77	20.66	22.78	15.55	24.54	19.51	24.93	20.06	13.02	65.51	81.61	14.40	16.67	27.19	14.64	8.00	4.27	16.63	5.36	28.84	6.54
76	E11_Aa	NovelBoundary	0	76.68	52.49	17.42	24.07	36.08	13.69	19.92	19.59	20.83	17.03	23.16	31.21	53.08	21.48	10.26	29.14	39.83	13.02	8.66	9.65	19.52	34.72	12.63
77	ER11a	ExonRegion	0	271.49	101.63	67.03	116.99	199.77	122.57	99.15	108.50	77.22	123.03	498.12	519.24	595.42	357.56	245.68	488.98	352.82	98.35	77.03	83.51	167.98	273.46	190.68
78	E11a_E12a	KnownJunction	0	316.87	99.85	56.00	103.58	182.26	127.03	106.65	76.93	64.35	95.76	330.72	363.72	535.35	311.26	224.24	343.93	234.60	43.03	38.40	59.06	115.40	151.43	145.80
79	I11_SR3	SilentIntronRegion	0	10.70	26.23	6.44	16.33	15.21	9.59	15.22	12.15	12.90	14.81	7.91	29.35	29.09	7.29	5.15	9.18	6.91	3.15	2.79	9.53	2.04	14.24	4.25
80	ER12a	ExonRegion	0	259.51	140.23	61.62	128.43	191.52	131.65	144.24	119.89	113.77	149.14	365.36	404.88	534.18	270.56	224.01	283.05	290.45	55.61	39.57	77.09	104.06	141.59	118.13
81	E12a_E13a	KnownJunction	0	363.25	219.50	74.27	183.36	266.98	192.90	182.22	143.35	141.61	177.21	345.30	410.38	417.02	332.39	191.98	288.98	207.20	64.92	26.35	73.95	109.59	141.45	93.13
82	ER13a	ExonRegion	0	310.44	198.85	67.26	189.74	232.47	153.64	147.43	149.81	137.26	186.25	380.02	417.70	508.31	263.76	264.08	267.94	270.21	69.19	37.98	89.41	100.15	167.02	106.39
83	E13a_E14a	KnownJunction	0	290.05	192.93	83.59	221.75	351.78	131.86	177.62	149.55	147.60	181.32	409.74	588.49	562.30	271.53	317.82	252.50	286.58	56.38	54.12	95.81	55.17	208.01	114.13
84	ER14a	ExonRegion	0	330.44	184.47	80.72	239.12	335.37	195.23	186.00	186.57	182.30	205.04	421.13	528.57	565.03	264.22	264.05	241.78	261.55	58.41	40.81	96.94	84.79	263.98	109.79
85	E14a_E15a	KnownJunction	0	317.61	187.93	77.05	282.55	375.38	138.27	221.65	185.41	184.95	219.17	340.61	504.01	627.72	218.73	360.59	188.92	216.55	49.00	18.73	99.46	85.50	254.92	75.80
86	ER15a	ExonRegion	0	320.81	149.70	113.70	221.73	241.83	128.57	140.22	169.54	133.23	176.54	182.42	447.98	358.08	152.89	274.94	127.86	109.13	26.24	34.62	73.83	30.65	200.52	51.50
87	IG48_SR1	SilentIntergenicRegion	0	31.25	24.53	2.86	16.71	19.59	6.26	7.58	9.71	13.62	12.85	3.30	8.46	7.54	4.25	15.83	4.35	2.01	1.23	4.66	9.36	1.34	9.16	2.51
88	IG48_AR2	ActiveIntergenicRegion	0	16.68	10.06	5.31	14.01	13.34	6.40	4.36	8.49	10.98	9.28	2.44	4.69	4.76	2.78	6.94	4.90	3.70	0.45	4.19	6.31	1.28	2.63	2.56