Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 JMY Gene 0 28.97 61.62 30.20 49.85 34.39 74.63 8.95 15.45 34.60 37.30 34.02 57.05 85.61 25.70 19.78 22.09 40.57 23.57 25.82 33.29 31.86 75.19 41.76 2 282259 Transcript 0 2.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3 396135 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 396137 Transcript 0 3.17 2.03 1.23 5.45 0.00 3.67 1.32 3.46 1.24 2.29 0.00 0.00 4.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 412001 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 IG43_SR1 SilentIntergenicRegion 0 0.83 0.34 0.51 2.97 0.77 2.62 0.27 0.21 0.91 0.45 0.63 4.83 16.89 1.14 3.29 3.32 2.13 0.30 4.55 0.22 1.01 1.00 1.29 7 ER1a ExonRegion 0 0.21 1.39 3.05 1.47 1.31 10.47 0.39 2.19 3.56 3.64 12.19 2.17 3.40 8.49 4.44 3.07 15.29 14.77 4.27 7.21 22.97 4.06 15.57 8 E1_Ab KnownBoundary 0 0.00 0.00 6.33 6.73 0.00 8.69 0.00 1.93 8.42 9.21 19.37 0.00 0.00 33.08 10.63 7.43 13.18 28.15 16.19 15.72 23.54 14.08 19.63 9 ER1b ExonRegion 0 3.58 8.50 7.12 7.00 2.00 12.50 1.57 5.41 10.79 12.58 23.49 5.56 7.57 23.84 12.85 16.51 30.60 28.94 14.07 17.32 40.65 16.79 26.57 10 E1_Da NovelBoundary 0 3.70 6.38 1.74 6.86 0.00 0.00 0.00 2.38 8.56 6.18 0.00 0.00 0.00 0.00 0.00 3.42 13.84 4.85 0.00 6.46 12.36 2.82 14.85 11 E1a_E2a KnownJunction 0 13.41 24.34 19.22 14.02 8.06 49.12 11.48 15.48 26.33 14.40 44.38 24.61 65.74 46.03 26.70 31.62 55.63 65.37 56.94 22.12 56.16 36.99 53.78 12 E2_Aa NovelBoundary 0 11.04 3.22 18.36 10.59 3.65 2.44 0.00 8.58 4.20 1.05 0.00 0.00 0.00 0.00 0.00 0.00 4.58 3.98 18.07 9.08 3.15 0.00 4.35 13 ER2a ExonRegion 0 19.19 33.64 25.73 24.06 14.06 30.18 4.74 16.88 31.30 20.46 64.10 49.79 60.65 35.72 17.79 27.43 88.06 45.16 47.40 31.43 80.08 51.41 58.23 14 E2_Da NovelBoundary 0 20.00 21.51 18.45 20.34 15.11 2.67 4.37 15.98 12.47 7.71 0.00 6.30 12.99 0.00 0.00 3.76 4.77 4.81 20.33 8.63 3.03 0.00 8.19 15 E2a_E3a KnownJunction 0 20.15 43.08 10.14 9.69 15.20 15.79 4.50 8.95 23.12 19.58 71.28 102.03 116.39 30.31 18.30 58.96 102.95 49.00 13.55 30.42 95.75 49.29 75.03 16 ER3a ExonRegion 0 11.77 37.24 17.07 19.54 14.81 42.93 5.54 12.13 31.56 24.12 79.31 82.09 122.62 37.23 17.06 49.52 88.97 41.47 32.70 43.93 76.43 63.76 64.90 17 E3a_E4a KnownJunction 0 17.63 52.29 26.67 20.54 4.24 76.72 2.25 13.72 36.83 34.20 54.38 80.88 163.46 38.55 41.91 53.06 84.99 33.37 17.22 57.85 72.65 56.46 74.35 18 E4_Aa NovelBoundary 0 7.56 3.09 10.56 0.00 0.00 0.00 0.00 4.48 1.13 1.10 2.00 0.00 0.00 0.00 14.09 3.85 0.00 0.00 4.80 3.26 0.00 0.00 0.00 19 ER4a ExonRegion 0 24.93 35.42 25.09 26.06 22.85 51.82 4.41 11.33 34.11 25.15 62.03 70.82 198.94 47.99 23.57 58.92 73.16 44.79 36.20 46.22 84.57 81.81 65.35 20 E4a_E5a KnownJunction 0 38.67 64.92 39.27 22.41 25.89 61.95 6.89 13.18 39.70 32.05 57.86 119.59 170.61 60.39 13.35 59.22 86.96 31.38 25.04 42.70 84.82 66.44 65.90 21 E5_Aa NovelBoundary 0 13.56 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.30 19.97 0.00 10.01 0.00 9.16 0.00 0.00 0.00 0.00 0.00 3.24 22 ER5a ExonRegion 0 20.98 53.43 22.31 26.48 9.09 54.01 11.77 11.36 30.86 18.29 58.79 74.17 193.53 35.98 16.51 60.03 87.82 48.24 40.36 52.63 51.31 72.51 54.44 23 E5_Ab KnownBoundary 0 31.64 56.63 37.88 27.04 6.37 70.13 8.21 8.09 29.43 24.77 78.70 111.19 201.77 44.68 29.17 38.37 76.39 57.79 30.87 40.40 46.39 74.15 81.61 24 ER5b ExonRegion 1 27.43 39.99 28.82 14.92 20.09 84.38 5.53 8.34 38.68 19.44 65.25 87.86 236.88 61.37 21.28 61.98 82.87 50.95 38.31 36.60 54.68 100.70 79.09 25 E5a_E6a KnownJunction 1 21.78 51.83 21.58 9.56 27.59 46.56 8.44 8.50 39.79 14.16 50.80 75.92 249.66 84.17 15.20 66.82 80.04 49.87 37.84 46.21 64.87 95.52 79.22 26 E5a_E11b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27 ER6a ExonRegion 0 20.48 35.14 26.92 17.57 10.02 35.71 6.35 14.78 38.53 21.33 65.30 95.94 213.82 45.57 21.64 41.88 77.92 47.14 38.65 46.30 67.14 81.41 59.53 28 E6a_E7a KnownJunction 1 40.67 70.32 24.22 18.81 4.33 62.98 13.56 25.79 59.03 29.06 91.60 82.08 230.50 63.51 10.14 31.10 91.91 50.49 33.13 55.86 54.61 166.13 83.23 29 E7_Aa NovelBoundary 0 16.08 26.90 1.83 1.23 0.00 0.00 0.00 1.81 5.27 3.30 4.84 6.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 30 ER7a ExonRegion 0 47.78 50.11 25.83 26.08 19.04 82.63 11.28 12.87 50.63 30.94 84.76 110.13 237.47 66.85 26.54 46.19 98.12 33.85 52.28 41.53 58.13 136.63 78.38 31 E7_Da NovelBoundary 0 3.48 10.85 1.63 20.51 7.39 0.00 0.00 1.85 5.82 8.68 0.00 7.05 12.82 0.00 0.00 0.00 4.77 1.99 0.00 5.82 0.00 2.63 0.00 32 E7a_E8a KnownJunction 1 40.75 30.85 33.91 15.85 8.66 43.21 3.49 8.26 28.59 31.72 24.37 55.37 169.47 30.55 8.90 24.95 56.19 22.18 13.46 35.92 20.70 91.12 26.38 33 ER8a ExonRegion 0 28.18 32.96 21.04 23.20 13.32 36.66 7.86 15.61 33.44 32.09 57.73 90.20 223.12 34.87 28.20 22.48 78.77 22.37 23.86 32.45 41.46 87.96 53.17 34 E8_Da NovelBoundary 0 6.74 9.80 9.20 14.62 6.96 5.05 0.00 0.00 3.18 10.64 12.79 18.01 15.10 15.13 8.90 8.54 8.32 0.00 9.04 14.76 0.00 15.00 4.35 35 E8a_E9a KnownJunction 1 20.82 27.96 16.94 19.34 13.75 30.21 0.00 11.05 28.88 31.80 54.96 67.22 166.22 19.84 10.38 24.52 125.48 21.31 64.85 43.85 57.70 124.24 62.23 36 I8 Intron 0 4.91 8.81 5.20 7.47 4.33 7.87 1.51 1.47 4.99 4.79 5.58 16.08 21.88 5.21 3.12 5.99 5.78 5.03 4.88 8.01 2.70 7.21 5.79 37 I8_SR1 SilentIntronRegion 0 2.33 8.08 5.42 7.59 4.10 7.64 1.59 1.23 5.20 5.16 5.09 16.90 22.32 5.25 3.13 6.12 5.85 4.75 5.03 8.25 2.95 7.58 5.77 38 I8_AR1 ActiveIntronRegion 0 33.04 16.93 2.85 6.33 6.96 10.50 0.69 4.02 2.87 0.89 11.06 7.42 17.52 4.92 3.02 4.64 5.15 8.13 3.32 5.54 0.00 3.25 6.11 39 E9_Aa NovelBoundary 0 3.63 6.64 11.59 20.71 0.00 2.90 0.00 2.26 15.91 5.29 9.95 43.81 26.62 7.06 0.00 12.73 7.20 5.43 47.62 42.57 3.15 11.63 19.12 40 ER9a ExonRegion 0 22.03 20.28 28.87 24.19 16.21 33.71 5.48 13.11 35.43 35.93 68.12 73.17 191.26 47.31 25.67 48.05 98.24 44.00 45.07 56.22 80.78 96.73 96.34 41 E9_Da KnownBoundary 1 86.02 26.38 9.11 7.79 7.39 32.31 0.00 2.30 16.35 16.22 26.59 18.16 170.93 11.60 13.35 27.77 21.22 17.29 17.32 55.67 31.57 52.84 48.40 42 E9a_E9b KnownJunction 0 2.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43 ER9b ExonRegion 1 27.83 9.75 6.13 2.53 3.23 17.53 0.51 1.37 7.70 9.24 8.64 9.04 56.14 5.97 13.65 10.66 12.04 4.78 7.87 25.78 18.02 21.88 16.67 44 E9_Ab KnownBoundary 0 0.00 5.39 1.51 0.00 0.00 16.07 1.85 0.00 0.00 1.02 0.00 6.30 31.65 7.12 4.45 4.36 3.65 3.61 0.00 15.79 13.71 6.25 8.54 45 ER9c ExonRegion 0 15.01 26.09 11.90 7.86 7.18 34.25 3.35 5.22 15.56 10.91 23.26 19.26 35.05 18.18 20.61 12.49 34.78 26.22 18.02 27.12 45.41 25.37 35.65 46 E9b_E10a KnownJunction 0 10.08 21.44 18.07 22.21 20.97 26.63 1.99 2.30 17.33 22.56 32.27 19.66 36.85 34.49 23.49 29.65 63.02 23.59 36.80 41.55 58.75 56.52 32.01 47 E10_Aa NovelBoundary 0 6.37 8.35 16.35 17.91 17.32 0.00 0.00 4.44 3.88 0.00 23.74 7.65 0.00 2.47 0.00 0.00 16.92 10.49 0.00 6.33 8.22 23.57 10.59 48 ER10a ExonRegion 0 19.63 36.12 26.62 29.10 23.64 52.73 8.21 7.27 28.56 30.47 58.38 47.29 64.35 36.46 26.55 28.11 72.18 34.23 29.66 53.03 54.33 76.92 60.73 49 E10_Da NovelBoundary 0 5.78 23.88 14.78 19.68 3.40 5.34 0.00 0.00 10.68 4.43 14.21 6.00 19.48 14.48 5.19 7.01 8.60 0.00 17.60 9.01 6.05 26.70 18.52 50 E10a_E11a KnownJunction 0 16.00 20.52 24.95 18.25 12.05 39.35 10.42 8.58 22.97 28.85 55.91 89.88 44.80 29.67 29.05 25.81 50.21 16.00 35.11 56.25 36.63 78.44 41.32 51 I10_AR1 ActiveIntronRegion 0 1.76 9.08 5.06 5.52 6.20 1.31 4.41 2.19 3.44 5.10 8.96 4.55 3.28 1.87 4.16 1.73 9.46 1.36 3.03 8.62 0.00 6.46 1.71 52 ER11a ExonRegion 0 19.19 65.28 20.78 45.27 36.18 85.41 10.69 14.06 41.62 41.37 29.90 75.79 107.52 25.86 13.55 21.29 36.20 20.11 28.29 37.82 23.96 91.30 45.41 53 E11_Ab KnownBoundary 1 11.11 29.07 16.00 67.89 47.28 86.43 7.24 33.60 38.54 58.51 14.85 72.92 67.85 27.78 10.26 19.99 21.13 12.39 21.84 16.68 14.09 98.10 39.44 54 ER11b ExonRegion 1 26.28 43.40 29.73 69.47 42.67 98.94 8.53 20.75 43.30 49.10 23.31 80.58 64.69 17.14 11.18 14.97 29.02 13.92 17.87 27.88 12.50 88.27 33.39 55 E11_Da KnownBoundary 0 35.04 83.54 40.12 92.46 70.46 98.86 14.88 27.11 46.32 49.35 45.01 79.53 99.18 15.30 8.90 18.80 25.43 8.00 8.85 39.95 19.46 106.12 34.66 56 ER11c ExonRegion 0 72.64 129.23 70.45 115.33 73.20 131.09 14.81 29.38 44.66 61.45 28.07 54.60 58.37 18.25 36.01 16.05 24.86 15.25 25.03 31.02 13.62 94.44 28.99 57 ER11d ExonRegion 0 3.17 2.03 1.23 5.45 0.00 3.67 1.32 3.46 1.24 2.29 0.00 0.00 4.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00