Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZCCHC9 Gene 0 45.92 27.55 22.57 31.44 40.83 21.98 32.05 23.71 25.65 32.43 52.51 95.49 70.85 65.77 68.11 51.05 57.68 14.16 13.56 20.34 26.01 45.14 35.06 2 380199 Transcript 1 37.56 59.92 5.47 8.49 85.06 46.00 61.25 0.00 5.79 15.31 51.59 5.70 0.00 81.11 80.97 65.11 74.43 11.23 32.47 14.25 30.77 49.72 33.63 3 438268 Transcript 0 13.04 5.79 3.52 3.66 12.65 15.33 8.30 0.00 6.31 3.22 2.21 0.00 0.00 7.42 10.01 0.00 0.00 2.57 12.24 5.82 0.00 0.00 0.00 4 254037 Transcript 0 16.87 14.55 8.06 14.15 14.82 10.97 17.10 9.72 15.84 13.53 11.59 39.20 28.87 20.14 12.13 14.21 17.43 10.14 7.63 16.69 11.00 20.58 19.45 5 407610 Transcript 1 99.50 5.59 7.24 21.61 85.57 14.59 52.38 9.41 1.79 18.86 80.02 20.26 35.55 67.40 71.08 213.11 99.02 17.53 52.71 10.80 28.60 90.69 89.20 6 ER1a ExonRegion 0 2.82 0.58 0.18 0.00 0.51 2.97 1.51 0.00 1.18 0.00 0.83 0.00 0.00 4.33 2.07 5.10 2.67 0.09 0.15 0.10 0.10 0.69 4.06 7 ER1b ExonRegion 0 29.16 9.26 1.23 0.76 8.32 26.49 21.48 0.00 2.33 0.00 12.67 0.00 0.00 21.84 29.98 24.44 22.01 1.85 3.19 2.13 13.71 7.41 15.99 8 ER1c ExonRegion 1 107.87 43.30 3.72 8.11 72.48 60.55 71.77 5.07 4.96 10.30 58.62 5.15 16.17 94.23 152.52 144.46 107.51 14.27 31.14 12.36 48.25 63.12 76.10 9 E1_Da KnownBoundary 1 201.22 23.81 6.92 15.42 123.60 49.46 86.96 13.06 6.02 15.18 112.03 30.76 50.97 84.23 178.38 275.57 113.32 27.48 66.73 23.71 50.35 131.47 120.62 10 E1a_E1d KnownJunction 0 37.56 59.92 5.47 8.49 85.06 46.00 61.25 0.00 5.79 15.31 51.59 5.70 0.00 81.11 80.97 65.11 74.43 11.23 32.47 14.25 30.77 49.72 33.63 11 E1a_E2a NovelJunction 0 14.15 12.04 6.15 3.26 3.82 0.00 4.24 0.00 1.30 2.42 4.42 0.00 0.00 2.24 8.90 17.35 0.00 0.00 0.00 0.00 2.97 11.14 3.76 12 E1_Db KnownBoundary 0 0.00 6.25 1.83 9.86 0.00 2.33 8.57 0.00 9.61 3.33 5.05 0.00 0.00 2.35 6.30 20.34 13.37 25.95 4.33 9.01 8.59 0.00 28.43 13 E1b_E1d KnownJunction 1 99.50 5.59 7.24 21.61 85.57 14.59 52.38 9.41 1.79 18.86 80.02 20.26 35.55 67.40 71.08 213.11 99.02 17.53 52.71 10.80 28.60 90.69 89.20 14 E1b_E2a NovelJunction 0 14.22 6.45 0.00 2.03 9.76 0.00 2.08 0.00 4.89 1.67 11.37 0.00 0.00 6.95 8.90 11.28 4.39 2.57 0.00 0.00 8.53 2.27 4.01 15 ER1d ExonRegion 1 100.99 15.32 6.39 18.74 92.31 27.64 66.20 11.73 7.45 19.09 91.95 26.75 38.69 87.70 129.83 244.78 103.74 36.82 60.29 23.78 48.95 98.60 125.54 16 ER1e ExonRegion 0 2.69 1.46 4.73 5.20 3.77 5.90 4.32 2.55 9.66 5.58 9.12 2.89 3.43 15.44 5.84 13.25 11.77 17.01 11.20 8.61 15.85 5.38 13.19 17 E1_Dc KnownBoundary 0 0.00 6.64 3.19 3.10 7.47 12.72 12.50 2.51 7.99 4.89 14.79 18.46 0.00 24.13 9.64 3.33 4.02 7.54 18.17 3.26 43.12 19.29 8.71 18 E1c_E1d KnownJunction 0 13.04 5.79 3.52 3.66 12.65 15.33 8.30 0.00 6.31 3.22 2.21 0.00 0.00 7.42 10.01 0.00 0.00 2.57 12.24 5.82 0.00 0.00 0.00 19 ER1f ExonRegion 0 16.87 14.55 8.06 14.15 14.82 10.97 17.10 9.72 15.84 13.53 11.59 39.20 28.87 20.14 12.13 14.21 17.43 10.14 7.63 16.69 11.00 20.58 19.45 20 E1_Ad KnownBoundary 1 60.90 25.78 24.01 18.11 42.61 23.45 34.05 14.09 35.59 29.47 21.37 36.01 82.46 31.96 20.03 19.31 11.97 1.58 3.86 22.05 17.17 29.64 7.09 21 ER1g ExonRegion 0 109.65 56.06 55.02 68.75 120.26 54.62 81.33 48.57 62.11 73.81 167.23 308.20 240.75 167.32 204.27 160.47 203.05 30.26 31.85 44.86 66.42 98.97 92.39 22 E1_Dd NovelBoundary 1 5.63 15.79 16.17 16.65 19.78 4.32 30.30 20.04 27.63 16.57 12.11 25.96 61.03 17.01 5.56 12.30 13.09 7.79 8.94 23.84 8.40 19.29 6.83 23 E1d_E2a KnownJunction 0 222.26 84.98 66.47 86.47 78.95 66.10 85.28 51.30 59.29 68.63 214.84 554.28 259.89 210.78 273.57 211.40 186.72 24.21 15.15 26.08 60.60 122.10 102.35 24 I1 Intron 0 11.43 13.50 4.81 13.84 12.37 6.37 8.47 8.38 12.09 11.04 5.39 21.35 14.30 7.45 8.57 7.56 6.21 3.26 2.89 7.91 2.73 14.43 6.43 25 I1_AR1 ActiveIntronRegion 0 17.37 13.71 1.60 9.52 14.90 16.12 9.70 5.28 8.63 9.52 5.67 33.07 19.41 9.17 12.31 10.45 10.64 7.27 4.67 13.10 3.23 21.37 9.47 26 I1_SR2 SilentIntronRegion 0 7.98 6.00 6.31 12.36 11.57 5.35 10.10 4.44 14.24 9.22 7.78 13.77 7.48 8.28 3.97 11.26 8.68 5.51 4.35 11.96 3.58 12.31 8.34 27 I1_AR4 ActiveIntronRegion 0 5.45 6.23 3.65 15.83 7.61 5.36 8.63 8.45 14.88 11.35 3.69 16.52 8.27 4.09 5.84 5.52 5.44 1.62 3.96 6.99 2.06 13.92 3.49 28 I1_AR5 ActiveIntronRegion 0 2.12 7.84 7.35 16.94 13.76 8.91 5.86 6.91 18.53 17.70 6.35 18.55 20.10 8.35 11.61 5.94 6.60 0.00 0.00 8.51 4.41 19.05 3.36 29 I1_SR3 SilentIntronRegion 0 14.68 19.88 5.15 14.31 14.42 5.76 7.57 10.54 10.51 11.92 5.08 24.98 19.04 8.30 11.14 6.48 4.84 2.43 1.57 5.82 2.58 14.53 6.48 30 E2_Aa NovelBoundary 0 37.64 31.44 19.90 22.71 20.46 16.98 22.21 14.95 7.73 15.98 7.00 17.41 21.91 9.30 26.82 3.85 11.78 8.42 0.00 6.14 5.68 12.98 6.74 31 ER2a ExonRegion 0 155.12 83.73 60.51 71.74 117.86 45.44 65.08 59.50 49.59 77.66 197.35 430.77 179.62 236.57 223.22 155.24 190.51 30.58 34.98 28.84 102.47 101.79 89.54 32 E2_Da NovelBoundary 0 49.34 21.38 16.68 35.03 39.90 10.90 24.78 8.58 13.43 8.95 16.95 6.45 20.94 17.01 22.37 13.07 25.71 7.83 4.42 6.26 20.39 31.41 40.97 33 E2a_E3a KnownJunction 0 152.18 107.81 72.94 81.51 108.83 37.54 83.25 68.96 50.06 77.34 186.42 426.44 163.14 291.78 275.79 211.14 205.89 38.76 44.99 10.80 89.14 135.02 126.85 34 I2 Intron 0 17.88 12.30 1.65 6.13 6.46 3.87 8.00 4.65 2.22 5.16 3.50 8.68 4.66 4.50 5.77 0.00 2.99 1.95 1.92 7.06 3.98 9.43 2.66 35 I2_SR1 SilentIntronRegion 0 18.09 12.45 1.67 6.20 6.52 3.92 8.09 4.71 2.25 5.22 3.54 8.79 4.72 4.54 5.80 0.00 3.02 1.97 1.95 7.15 4.01 9.54 2.69 36 E3_Aa NovelBoundary 0 68.46 27.89 11.80 30.77 52.72 11.24 16.56 17.62 16.38 14.48 9.21 5.70 13.64 17.60 11.37 13.24 17.95 2.32 4.33 14.00 3.15 15.68 4.35 37 ER3a ExonRegion 0 155.96 87.18 57.99 71.57 114.19 71.77 100.24 73.10 46.75 77.50 148.90 288.12 145.64 233.61 205.55 179.73 134.02 28.05 36.82 30.79 81.85 89.12 113.64 38 E3a_E4a KnownJunction 0 88.31 94.65 56.89 70.59 92.11 47.36 76.49 65.55 39.64 71.00 110.98 197.76 147.56 189.12 153.16 66.14 86.02 12.81 24.38 39.25 80.56 36.13 40.89 39 I3 Intron 0 11.70 4.46 2.37 3.70 6.28 0.74 3.80 4.22 6.31 5.33 2.69 4.31 2.68 1.59 3.32 1.84 2.65 0.82 1.57 3.02 1.36 3.02 1.27 40 I3_SR1 SilentIntronRegion 0 14.84 5.65 2.37 3.73 7.25 0.93 4.35 4.65 7.46 6.09 2.77 4.04 3.66 1.14 3.99 2.21 2.96 0.84 2.28 2.62 1.74 3.85 1.09 41 ER4a ExonRegion 0 134.75 91.48 50.28 86.73 110.60 67.64 87.46 66.91 48.60 70.68 172.92 239.38 174.75 245.17 231.93 125.43 142.42 20.19 15.14 28.18 73.11 89.29 70.82 42 E4_Da NovelBoundary 0 10.08 0.00 1.42 4.36 8.23 0.00 0.00 5.05 6.08 6.37 2.32 17.11 0.00 0.00 0.00 0.00 0.00 1.78 13.93 0.00 2.78 5.02 4.18 43 E4a_E5a KnownJunction 0 227.74 138.73 72.41 129.92 165.79 79.67 115.79 88.43 64.93 87.49 260.43 255.38 122.23 358.47 301.87 167.90 207.48 34.20 12.89 51.01 79.75 125.96 105.59 44 ER5a ExonRegion 0 108.35 58.64 67.17 88.95 91.69 41.93 61.11 69.07 52.03 94.09 133.10 167.47 159.27 158.57 194.43 107.52 123.45 15.99 20.38 28.95 43.11 124.55 50.78 45 E5_Da KnownBoundary 0 6.67 0.00 4.82 1.47 7.64 4.20 2.08 11.13 7.49 10.02 0.00 13.95 6.17 2.47 0.00 0.00 0.00 0.00 0.00 0.00 2.53 12.25 8.71 46 ER5b ExonRegion 1 4.83 1.36 2.59 2.00 11.31 2.07 1.60 5.53 5.92 5.65 1.28 15.61 16.46 1.06 4.04 1.96 1.09 0.00 0.00 2.10 2.03 7.07 4.76