Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PPWD1 Gene 0 268.69 147.69 108.68 162.90 220.76 113.44 132.57 128.52 130.18 103.76 215.27 262.49 204.43 234.07 215.07 207.74 207.51 58.91 67.05 101.38 87.80 123.70 81.77 2 261308 Transcript 0 288.09 145.26 110.40 169.37 240.61 122.90 135.06 130.04 123.43 104.22 220.60 264.75 196.34 271.20 239.76 217.14 211.84 56.70 65.62 105.68 90.05 130.07 83.69 3 ER1a ExonRegion 1 45.76 41.73 21.03 28.87 58.57 78.95 81.76 36.79 55.03 33.22 146.82 32.55 26.76 165.79 77.48 168.09 231.39 72.99 48.77 70.79 144.47 47.29 71.97 4 E1_Da NovelBoundary 0 0.00 20.26 11.59 5.66 0.00 0.00 5.26 16.47 22.37 18.48 7.53 6.30 0.00 30.43 11.50 37.68 56.01 80.46 49.79 40.46 14.70 5.14 40.89 5 E1a_E2a KnownJunction 1 14.22 10.92 38.53 62.63 31.75 22.20 11.39 58.53 75.46 48.38 177.41 54.47 60.39 569.31 206.19 384.77 245.91 78.10 97.89 83.41 91.86 145.98 185.92 6 I1 Intron 0 7.06 12.70 6.51 8.95 7.47 5.12 13.07 10.52 14.25 5.56 5.17 15.96 20.97 7.08 5.42 9.32 12.44 12.04 6.14 21.18 2.41 5.04 2.87 7 I1_AR1 ActiveIntronRegion 0 8.66 15.05 9.85 15.07 10.02 7.79 15.42 16.42 18.31 6.75 7.03 12.01 18.12 8.15 9.44 15.80 22.69 24.16 11.61 31.64 4.37 3.50 4.50 8 I1_AR6 ActiveIntronRegion 0 0.00 6.89 6.26 0.76 7.88 9.17 20.52 6.43 9.13 4.59 7.73 9.86 22.67 6.14 0.00 0.99 13.02 1.75 0.00 28.13 0.00 3.36 2.94 9 ER2a ExonRegion 1 16.60 33.25 24.16 53.35 59.26 58.75 30.81 52.66 63.54 43.09 152.30 128.58 99.04 224.14 135.65 329.82 150.78 80.91 73.88 77.32 46.04 90.56 133.32 10 E2_Da NovelBoundary 0 12.45 11.84 4.52 24.44 113.58 55.03 29.28 29.00 42.24 24.10 25.95 57.02 72.56 16.36 4.45 25.98 43.95 3.48 12.80 46.47 9.95 27.68 18.95 11 E2a_E3a KnownJunction 0 20.23 39.80 26.08 28.80 107.89 150.54 79.98 40.50 26.13 42.93 90.92 68.57 76.29 113.54 80.72 88.52 142.50 9.58 30.59 41.67 25.39 64.85 38.50 12 I2 Intron 1 27.39 25.73 5.45 14.66 38.36 17.03 27.45 21.07 28.60 10.78 15.25 113.27 74.16 23.56 12.14 21.88 19.38 8.94 8.58 27.13 8.16 16.94 7.21 13 I2_AR1 ActiveIntronRegion 0 17.03 24.28 7.11 17.92 36.81 15.71 26.63 18.05 34.16 13.31 22.83 94.95 73.04 34.05 9.50 28.93 32.98 15.28 13.64 30.92 18.58 18.39 10.67 14 I2_SR3 SilentIntronRegion 1 33.18 34.06 6.12 18.25 52.66 20.25 37.99 33.35 35.16 12.74 12.58 170.51 106.53 18.95 16.42 18.24 15.70 6.10 6.92 30.50 1.40 19.80 7.28 15 I2_AR3 ActiveIntronRegion 1 63.19 35.04 5.35 12.81 42.87 27.71 31.39 22.62 24.99 10.31 14.71 123.23 72.26 18.79 17.78 25.32 11.30 7.62 6.55 28.30 5.20 17.87 5.36 16 E3_Aa NovelBoundary 1 81.79 56.24 12.48 30.90 112.22 45.49 64.35 63.99 68.20 27.48 15.95 161.45 87.66 32.26 24.72 46.31 28.52 14.59 12.52 22.37 5.37 28.47 15.45 17 ER3a ExonRegion 0 97.80 105.14 32.43 61.21 188.23 159.18 201.83 66.52 81.46 63.57 185.00 354.24 213.84 179.38 116.17 136.95 182.56 34.85 36.87 105.81 45.54 101.72 53.96 18 E3a_E4a KnownJunction 1 140.17 116.76 39.95 80.58 83.45 76.09 106.56 75.29 104.77 67.02 189.84 532.37 233.10 246.45 148.59 154.40 186.91 47.01 56.75 103.35 82.29 121.18 84.25 19 ER4a ExonRegion 0 122.13 111.83 46.60 84.76 123.06 66.80 88.57 80.47 102.67 81.33 242.27 310.43 226.05 233.30 156.96 225.22 219.06 44.42 48.57 97.27 101.12 107.50 94.41 20 E4a_E5a KnownJunction 0 122.17 94.72 59.13 88.47 108.40 43.61 68.23 84.08 106.19 97.29 259.33 311.95 199.82 251.87 148.22 212.94 233.10 51.65 20.61 92.10 150.80 98.71 84.59 21 E4a_E6a NovelJunction 0 7.56 9.34 8.07 14.18 16.47 2.38 13.43 8.67 22.51 1.07 5.32 0.00 13.64 0.00 0.00 0.00 8.60 10.78 3.48 8.88 0.00 3.12 0.00 22 ER5a ExonRegion 0 194.72 154.40 70.96 101.12 173.46 91.07 126.56 90.65 107.80 82.15 222.58 335.09 269.59 238.71 160.51 201.95 219.07 38.38 49.16 88.33 73.21 115.89 77.40 23 E5_Da NovelBoundary 0 17.19 64.00 1.39 35.23 22.50 0.00 42.31 22.71 45.54 27.99 10.00 71.87 13.64 9.54 8.90 11.79 8.70 9.45 8.85 35.15 0.00 16.41 7.43 24 E5a_E6a KnownJunction 0 285.68 135.83 85.63 123.29 189.81 133.96 111.95 98.33 90.65 79.83 233.01 213.22 246.57 292.43 180.85 207.55 220.94 30.34 65.60 103.29 92.73 160.13 64.28 25 I5 Intron 0 14.79 22.71 8.40 25.09 21.95 6.82 19.95 24.43 29.03 17.24 8.54 24.40 29.87 8.79 13.01 14.59 16.28 14.12 8.56 27.61 5.51 9.30 8.51 26 I5_AR1 ActiveIntronRegion 0 22.84 30.98 12.14 38.48 27.06 9.56 31.43 33.96 41.98 25.26 14.32 17.75 30.62 10.58 16.64 19.38 21.39 22.64 13.97 40.00 8.93 13.72 13.18 27 I5_AR2 ActiveIntronRegion 0 8.73 33.55 19.61 47.87 42.48 4.58 23.50 34.35 37.67 19.93 20.78 40.59 39.87 8.32 3.26 34.55 28.88 33.49 6.37 44.15 6.89 2.34 15.05 28 I5_SR2 SilentIntronRegion 0 11.12 20.06 8.49 24.58 22.14 9.29 19.13 18.62 26.72 19.34 6.65 31.13 29.55 7.83 8.18 10.40 14.70 12.99 5.06 29.25 4.52 7.97 3.53 29 I5_AR3 ActiveIntronRegion 0 7.01 8.48 2.28 10.16 2.83 5.76 28.26 4.40 13.69 7.14 0.33 2.97 21.44 9.93 8.87 19.79 8.49 6.81 2.37 12.52 3.78 3.21 3.94 30 E6_Aa NovelBoundary 0 38.23 24.21 13.31 45.88 18.59 34.47 72.60 34.95 26.45 30.43 5.05 25.66 6.82 14.89 45.61 32.98 21.41 14.92 8.19 43.91 0.00 13.41 10.93 31 ER6a ExonRegion 0 254.19 131.45 92.60 113.98 207.36 104.90 118.95 123.60 132.60 88.70 249.73 299.05 244.50 308.29 218.43 233.71 240.64 46.44 80.70 108.69 103.85 143.53 76.88 32 E6_Da NovelBoundary 0 47.86 65.71 16.59 41.79 31.58 31.40 71.01 40.54 74.22 27.69 22.64 29.56 33.76 57.15 33.50 54.86 51.15 17.53 18.07 44.29 16.25 39.37 37.22 33 E6a_E7a KnownJunction 0 191.52 103.14 79.80 98.19 183.53 86.20 106.83 114.93 63.74 91.55 232.95 243.23 165.57 252.46 187.77 208.83 181.02 26.82 46.68 58.55 57.08 132.45 27.23 34 I6 Intron 0 44.80 54.65 16.57 45.43 61.94 39.24 53.01 40.59 65.08 30.62 23.71 68.15 57.61 24.53 18.26 38.78 33.35 19.38 15.90 46.20 6.36 39.97 17.13 35 I6_AR1 ActiveIntronRegion 0 31.06 50.06 13.91 42.66 58.58 39.25 50.54 41.31 71.14 30.56 26.19 80.85 64.95 24.64 16.41 38.36 37.59 18.69 16.09 48.11 6.18 39.60 18.37 36 I6_AR2 ActiveIntronRegion 0 88.10 70.08 25.14 55.00 73.77 40.17 61.88 39.34 48.04 31.56 16.67 30.75 36.43 24.75 24.39 40.99 21.14 21.98 15.70 41.41 7.05 42.07 13.73 37 E7_Aa NovelBoundary 0 266.79 108.14 30.69 120.06 136.42 54.46 67.70 93.94 102.28 71.56 37.33 25.21 59.74 31.02 43.76 38.54 33.10 13.10 16.00 58.93 23.66 40.35 12.04 38 ER7a ExonRegion 0 369.59 180.34 132.23 209.90 325.89 163.05 154.45 156.30 146.66 121.76 283.04 303.93 278.86 270.48 231.03 232.14 215.74 58.46 74.49 108.34 75.07 162.24 90.29 39 E7_Da NovelBoundary 0 20.37 42.56 3.46 37.06 12.82 10.90 41.03 38.81 45.14 14.37 16.64 31.51 25.32 7.30 25.96 16.15 31.04 14.26 8.94 35.54 3.09 42.43 3.67 40 E7a_E8a KnownJunction 0 571.66 262.45 146.83 213.56 562.48 159.57 191.71 182.33 149.56 120.99 330.03 445.65 255.83 320.09 308.80 181.92 287.61 29.68 53.93 119.78 117.07 145.43 92.11 41 I7 Intron 0 51.19 45.04 14.17 47.75 40.22 30.40 43.25 35.20 43.90 26.18 10.17 44.93 33.48 17.26 16.30 19.92 16.34 13.68 11.74 29.40 3.92 34.59 13.93 42 I7_AR1 ActiveIntronRegion 0 26.75 36.55 8.01 32.66 27.16 24.76 41.44 25.48 37.83 24.26 9.64 50.07 32.41 19.03 12.21 16.35 15.05 11.09 8.77 30.55 3.22 37.81 13.13 43 I7_SR1 SilentIntronRegion 0 30.94 65.19 12.13 29.68 19.55 23.77 24.20 29.09 45.55 14.48 4.17 23.79 43.72 18.29 15.42 18.26 8.23 13.01 6.88 23.66 2.20 30.80 7.81 44 I7_AR2 ActiveIntronRegion 0 30.67 50.30 13.22 45.86 35.25 21.19 40.89 24.87 25.73 21.03 4.87 22.64 23.75 12.19 14.00 14.73 7.13 9.50 8.42 32.19 2.28 28.83 13.78 45 I7_SR2 SilentIntronRegion 0 60.19 32.41 12.28 56.68 47.83 27.77 47.80 54.11 59.12 33.26 19.62 73.99 37.06 16.11 19.12 29.80 27.11 18.49 20.48 30.60 5.21 31.14 21.76 46 I7_AR3 ActiveIntronRegion 0 89.92 43.23 21.36 68.94 62.36 43.07 54.02 48.15 54.15 34.43 14.18 55.23 33.54 17.70 20.94 24.56 23.55 17.37 16.67 29.66 5.85 36.71 16.26 47 E8_Aa NovelBoundary 0 312.87 94.26 44.53 119.86 126.57 53.72 105.81 81.94 78.10 58.45 32.90 36.31 39.61 26.43 42.77 25.29 47.97 22.72 4.42 52.28 20.02 40.66 32.10 48 ER8a ExonRegion 0 551.61 285.00 191.68 310.45 436.43 192.05 218.40 221.74 184.26 154.74 298.13 373.64 273.00 322.66 333.23 282.55 259.45 110.30 82.08 134.69 145.23 147.00 115.97 49 E8a_E9a KnownJunction 0 548.99 207.33 217.14 323.47 355.01 190.06 181.11 242.50 177.17 170.55 268.28 307.00 292.84 303.73 457.51 274.46 204.21 83.78 80.94 99.14 106.81 153.33 99.36 50 E9_Aa NovelBoundary 0 31.34 23.68 28.44 46.81 44.57 13.12 28.79 18.44 37.15 32.05 2.53 23.71 20.13 2.83 14.22 11.02 4.68 1.99 13.08 23.52 2.97 14.63 8.02 51 ER9a ExonRegion 0 565.78 232.15 230.71 363.77 502.19 177.97 226.06 225.94 188.20 163.21 278.41 322.86 252.58 363.58 443.36 324.65 234.61 100.52 103.49 177.19 133.92 169.78 109.73 52 E9_Da NovelBoundary 0 38.23 21.51 31.70 47.38 26.49 21.18 15.28 26.41 28.39 40.62 9.63 6.30 27.11 7.06 8.90 7.69 3.55 3.86 0.00 26.91 0.00 10.84 0.00 53 E9a_E10a KnownJunction 0 711.46 218.58 202.27 382.27 487.35 204.26 294.34 224.22 179.54 158.46 210.21 320.80 227.10 411.21 461.71 249.51 212.15 92.23 88.38 207.22 81.11 218.05 82.63 54 I9 Intron 0 23.57 20.82 15.08 28.50 26.46 24.05 23.87 23.15 26.95 26.39 10.92 12.83 20.55 5.98 8.47 11.08 15.66 12.36 7.03 13.94 3.36 13.79 6.64 55 I9_AR1 ActiveIntronRegion 0 23.62 20.87 15.11 28.57 26.51 24.10 23.93 23.20 27.01 26.45 10.94 12.86 20.59 5.99 8.49 11.10 15.70 12.39 7.04 13.97 3.37 13.82 6.65 56 E10_Aa NovelBoundary 0 32.89 19.34 38.79 63.69 65.20 35.21 55.03 55.41 73.52 43.01 27.80 17.26 38.47 28.37 13.23 10.77 11.69 17.53 13.55 17.45 2.59 19.96 7.85 57 ER10a ExonRegion 0 576.24 248.86 237.18 352.81 333.84 153.05 195.30 233.11 236.84 190.64 269.86 225.87 184.78 280.62 411.03 247.86 254.46 95.11 113.47 155.06 98.67 163.86 92.21 58 E10_Da NovelBoundary 0 26.97 50.45 23.86 67.19 38.62 38.73 15.55 33.39 62.38 25.06 14.27 18.61 39.61 9.83 21.39 0.00 9.07 6.51 18.54 10.87 7.66 12.74 0.00 59 E10a_E11a KnownJunction 0 388.44 227.13 196.80 270.79 346.35 188.47 152.49 160.48 172.57 156.47 200.42 158.60 142.52 233.74 348.60 126.89 226.55 30.76 62.78 117.22 87.11 109.91 37.30 60 I10 Intron 0 28.97 30.07 20.19 35.93 41.97 21.29 22.96 26.34 26.84 20.08 8.28 16.78 19.88 6.00 11.68 9.24 8.90 5.34 4.40 12.06 1.07 15.12 6.09 61 I10_AR1 ActiveIntronRegion 0 29.04 30.15 20.25 36.03 42.09 21.35 23.02 26.41 26.91 20.13 8.30 16.82 19.94 6.02 11.71 9.27 8.92 5.36 4.41 12.09 1.07 15.16 6.10 62 E11_Aa NovelBoundary 0 50.68 48.74 27.79 38.09 83.19 35.49 44.21 26.33 48.09 20.04 9.79 7.35 26.62 14.30 39.80 8.29 17.48 1.62 9.32 16.81 0.00 14.63 3.84 63 ER11a ExonRegion 1 261.04 109.58 146.69 204.60 188.56 80.15 89.06 161.84 147.08 132.77 111.98 217.61 154.09 113.51 222.05 87.21 99.89 28.29 62.46 70.13 31.78 132.10 45.12 64 IG20 Intergenic 0 4.58 19.58 7.26 22.92 18.23 20.44 16.22 12.88 23.31 17.20 2.26 15.89 16.03 2.68 2.42 4.08 2.70 3.86 2.33 10.95 1.22 12.07 3.01 65 IG20_AR4 ActiveIntergenicRegion 0 5.49 21.57 9.41 24.87 20.20 23.58 18.13 15.38 27.87 21.51 2.32 14.39 17.01 2.09 2.86 3.38 2.11 3.90 2.22 7.91 0.33 14.36 1.69 66 IG20_SR2 SilentIntergenicRegion 0 4.57 20.83 6.81 25.83 20.51 20.78 17.72 13.00 23.30 17.18 1.99 19.15 16.99 2.96 1.38 5.09 3.30 3.66 3.01 13.87 1.52 10.89 4.13 67 IG20_AR5 ActiveIntergenicRegion 0 2.46 12.79 3.40 12.77 12.46 16.64 9.24 8.40 14.57 7.16 2.25 12.22 15.57 4.85 3.74 3.46 3.84 5.57 1.48 11.89 3.59 11.64 3.42