Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PDE4D Gene 0 3.99 21.08 3.45 1.40 4.24 2.70 4.87 4.65 7.03 3.01 0.53 4.36 0.33 0.75 0.14 0.82 1.36 2.78 3.88 22.25 5.24 52.85 30.50 2 405755 Transcript 0 0.12 0.68 1.57 0.00 0.00 0.00 0.00 0.00 2.05 0.29 0.11 0.00 0.00 0.00 0.00 0.00 0.00 1.25 0.00 3.00 0.00 0.00 0.33 3 309641 Transcript 0 4.03 1.68 4.40 2.61 0.00 0.00 2.26 2.64 1.91 0.33 0.00 0.40 0.00 2.67 0.00 0.00 0.00 2.10 0.00 0.02 4.18 3.51 0.28 4 360047 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.02 5 340635 Transcript 0 0.00 0.80 3.42 0.00 2.74 0.00 1.04 1.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.03 10.23 4.94 6 356665 Transcript 0 0.35 0.17 0.92 0.23 0.22 0.00 0.22 0.58 0.41 0.00 0.16 0.36 0.00 0.27 0.00 0.00 0.00 0.31 0.00 0.71 0.92 1.56 0.73 7 405053 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 358923 Transcript 0 0.02 5.82 1.04 0.01 1.00 1.47 4.02 1.25 0.78 2.33 0.03 3.95 0.00 0.01 0.00 0.00 0.02 3.22 1.33 8.91 9.06 25.49 27.69 9 317118 Transcript 0 0.00 21.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.08 0.02 0.15 0.00 10 IG39_SR21 SilentIntergenicRegion 0 11.19 0.86 0.00 0.40 0.00 0.00 0.00 0.00 1.22 0.00 0.00 1.19 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.71 0.00 0.00 0.00 11 IG39_AR20 ActiveIntergenicRegion 0 4.12 0.79 2.81 0.75 2.08 0.00 2.06 0.00 3.58 0.00 14.96 16.72 0.00 1.56 0.00 22.96 1.29 0.00 0.00 9.86 0.86 1.57 6.75 12 ER1a ExonRegion 0 0.24 1.37 1.31 0.00 0.00 0.00 0.00 0.00 1.35 0.57 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.00 2.74 0.00 0.00 0.66 13 E1a_E5b KnownJunction 0 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 2.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.20 0.00 3.26 0.00 0.00 0.00 14 E2_Aa NovelBoundary 0 7.33 0.00 2.96 1.90 0.00 0.00 4.24 4.52 9.87 0.00 0.00 13.95 0.00 0.00 0.00 7.18 3.93 0.00 0.00 6.01 3.15 3.00 0.00 15 ER2a ExonRegion 0 0.80 0.14 2.49 1.20 0.00 0.00 0.64 2.73 1.01 0.66 0.01 0.79 0.00 0.75 0.00 0.00 0.00 1.76 0.00 0.04 2.25 1.70 0.57 16 E2a_E5b KnownJunction 0 7.26 3.22 6.30 4.03 0.00 0.00 3.89 2.55 2.81 0.00 0.00 0.00 0.00 4.59 0.00 0.00 0.00 2.45 0.00 0.00 6.12 5.33 0.00 17 I2_AR6 ActiveIntronRegion 0 65.32 6.23 9.66 8.73 21.84 0.98 5.94 6.30 13.09 6.75 0.80 1.18 0.00 0.00 1.36 5.01 0.00 1.45 0.36 3.80 0.00 1.54 2.28 18 I2_AR23 ActiveIntronRegion 0 3.17 4.07 0.61 1.36 0.00 0.00 0.00 5.19 1.24 0.00 0.00 4.33 0.00 3.25 0.00 0.00 3.30 1.85 0.00 21.28 0.00 0.00 0.00 19 I2_AR56 ActiveIntronRegion 0 11.49 0.29 0.00 2.73 0.00 0.79 3.78 0.00 0.00 0.00 0.00 4.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 20 I2_AR57 ActiveIntronRegion 0 12.70 2.03 0.00 1.56 0.00 0.00 3.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 21 I2_AR58 ActiveIntronRegion 0 11.89 2.03 0.00 0.00 0.00 0.00 3.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 22 ER3a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.03 23 E3a_E5b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 E4_Aa NovelBoundary 0 6.82 3.35 5.17 0.00 0.00 0.00 0.00 0.00 1.71 0.00 0.00 6.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.36 3.06 12.38 25 ER4a ExonRegion 0 0.00 1.60 1.85 0.00 1.15 0.00 2.08 0.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.92 8.88 5.87 26 E4a_E5b KnownJunction 0 0.00 0.00 5.00 0.00 4.33 0.00 0.00 2.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.15 11.57 4.01 27 ER5a ExonRegion 0 0.35 0.17 0.92 0.23 0.22 0.00 0.22 0.58 0.41 0.00 0.16 0.36 0.00 0.27 0.00 0.00 0.00 0.31 0.00 0.71 0.92 1.56 0.73 28 ER5b ExonRegion 0 4.93 6.87 9.46 2.63 1.74 4.33 3.79 6.76 9.02 4.56 2.12 5.96 2.04 3.49 1.09 8.57 7.90 5.68 0.00 12.33 18.29 16.07 15.82 29 E5a_E6a KnownJunction 0 3.33 6.71 12.27 0.00 0.00 7.50 4.42 2.55 4.75 12.68 0.00 0.00 0.00 0.00 0.00 11.71 9.54 0.00 0.00 13.17 16.49 19.29 3.50 30 ER6a ExonRegion 0 0.80 9.29 11.56 0.22 0.00 5.45 4.19 3.46 11.55 8.68 2.51 0.00 3.68 1.40 0.47 7.87 6.07 0.95 0.00 12.02 15.37 14.58 8.57 31 E6a_E7a KnownJunction 0 0.00 16.44 6.42 0.00 0.00 0.00 8.48 4.56 13.60 3.17 4.79 0.00 6.82 2.41 0.00 3.85 3.93 2.07 0.00 11.19 10.26 6.25 15.79 32 ER7a ExonRegion 0 5.15 10.91 6.56 1.05 0.00 3.20 7.39 3.11 12.67 6.06 4.10 2.98 0.89 7.53 2.59 7.83 13.92 6.47 2.20 15.01 27.73 9.12 22.34 33 E7a_E8a KnownJunction 0 18.30 14.87 4.79 3.60 0.00 4.43 6.76 4.19 13.92 6.29 2.05 0.00 0.00 2.18 0.00 4.27 16.64 11.98 0.00 14.38 22.12 19.53 31.50 34 ER8a ExonRegion 0 6.60 5.98 1.76 2.37 0.00 0.88 1.83 1.38 6.15 2.89 3.83 1.13 3.94 1.56 0.00 4.28 8.98 7.32 0.32 7.19 12.69 10.71 11.04 35 E8a_E9b KnownJunction 0 3.56 3.22 0.00 0.00 0.00 0.00 0.00 0.00 1.71 1.67 4.63 6.30 0.00 0.00 0.00 0.00 0.00 2.32 0.00 2.49 5.93 0.00 4.35 36 ER8b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37 I8_AR8 ActiveIntronRegion 0 12.71 7.18 2.30 2.95 4.71 0.99 7.03 3.82 4.79 3.05 1.20 0.81 3.39 0.33 0.00 3.36 0.75 0.31 0.00 4.80 0.53 1.43 4.35 38 I8_AR11 ActiveIntronRegion 0 13.18 10.11 3.68 4.39 8.06 1.83 3.24 7.28 6.87 3.44 0.00 1.91 0.84 1.19 1.11 0.53 2.36 1.32 1.71 6.39 2.72 1.86 3.15 39 I8_SR10 SilentIntronRegion 0 31.54 12.20 2.45 8.72 2.14 7.34 3.31 7.43 7.04 3.67 0.00 0.00 0.00 0.16 2.90 0.00 0.00 0.00 0.00 10.43 4.41 0.00 0.00 40 I8_AR12 ActiveIntronRegion 0 16.89 9.13 4.32 3.14 9.26 3.91 5.40 3.84 3.40 2.04 0.00 5.03 0.99 0.34 1.49 1.14 0.85 0.35 1.22 4.98 1.05 1.07 1.13 41 I8_AR22 ActiveIntronRegion 0 11.28 4.12 3.00 0.59 7.70 0.61 2.37 2.61 3.10 0.58 0.19 1.20 0.37 0.06 0.20 0.82 0.80 1.06 0.92 3.35 0.43 0.10 2.13 42 I8_AR35 ActiveIntronRegion 0 0.81 1.07 18.83 0.21 0.12 0.39 4.11 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.36 1.73 0.28 1.09 0.60 0.00 0.00 43 I8_SR24 SilentIntronRegion 0 0.36 0.58 33.23 0.00 0.38 0.62 5.15 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.75 2.98 0.00 0.00 0.56 0.53 0.74 44 I8_SR25 SilentIntronRegion 0 0.08 1.28 35.35 0.00 0.00 0.39 3.28 0.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.25 2.23 0.00 0.09 0.83 0.23 0.85 45 I8_AR36 ActiveIntronRegion 0 0.42 0.98 17.73 0.56 0.00 0.38 4.30 1.06 0.89 0.35 0.00 0.42 0.32 0.18 0.00 1.63 0.45 4.26 0.00 1.15 0.30 0.67 0.85 46 I8 Intron 0 0.00 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.81 0.00 10.85 4.50 9.56 10.48 47 I8_AR1 ActiveIntronRegion 0 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.87 0.00 11.07 4.59 9.76 10.70 48 E9_Aa NovelBoundary 0 0.00 3.29 6.65 2.06 0.00 5.79 2.21 2.14 5.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.56 9.13 33.94 18.53 54.74 67.69 49 ER9a ExonRegion 0 0.02 5.82 1.04 0.01 1.00 1.47 4.02 1.25 0.78 2.33 0.03 3.95 0.00 0.01 0.00 0.00 0.02 3.22 1.33 8.91 9.06 25.49 27.69 50 E9_Ab KnownBoundary 0 0.00 9.21 1.83 0.00 0.00 2.16 9.49 2.18 3.59 4.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.14 0.00 20.33 12.85 27.49 42.51 51 ER9b ExonRegion 0 0.38 10.08 3.91 0.39 0.33 0.87 4.26 9.40 15.41 6.45 0.88 4.75 3.52 2.20 0.00 2.71 6.34 11.48 8.50 52.56 20.46 86.93 84.85 52 E9_Da NovelBoundary 0 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.76 9.52 0.00 3.12 11.27 53 E9a_E11a KnownJunction 0 0.00 26.97 3.58 1.83 3.82 2.33 3.44 5.96 12.88 11.47 2.00 0.00 0.00 2.47 0.00 0.00 4.39 15.30 0.00 51.90 8.22 129.63 92.02 54 I9_SR1 SilentIntronRegion 0 0.52 3.91 1.31 0.54 1.21 0.29 2.65 0.80 3.49 0.95 0.00 1.52 0.00 0.00 0.09 0.46 0.22 0.50 0.64 7.99 0.58 0.70 12.56 55 I9_AR3 ActiveIntronRegion 0 11.40 9.30 14.47 2.89 4.62 1.12 11.57 3.14 3.55 1.04 0.39 0.36 0.39 0.00 0.42 0.00 0.00 1.68 4.21 4.11 1.79 1.06 16.11 56 I9_SR3 SilentIntronRegion 0 7.89 10.10 11.79 2.19 6.87 0.46 6.58 3.84 4.42 1.42 0.00 0.30 0.00 0.19 0.00 0.00 0.00 4.42 3.96 7.05 2.18 1.21 15.56 57 I9_AR4 ActiveIntronRegion 0 5.24 15.03 8.68 2.24 9.06 0.61 7.88 5.31 6.56 2.55 0.00 0.59 0.00 0.00 0.48 0.00 0.00 2.78 2.65 9.35 1.10 2.00 15.94 58 I9_AR5 ActiveIntronRegion 0 7.18 7.04 12.43 2.32 7.50 0.00 7.72 6.26 9.15 1.59 0.00 1.19 0.00 0.00 0.97 0.00 0.00 1.56 7.43 6.26 0.00 1.38 12.23 59 I9_AR6 ActiveIntronRegion 0 3.17 13.03 14.43 7.12 3.65 0.00 14.50 4.48 7.92 2.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 2.90 6.19 0.00 1.04 15.22 60 I9_AR7 ActiveIntronRegion 0 6.49 7.07 10.05 2.82 17.39 0.00 10.35 2.91 4.10 2.29 0.00 0.00 0.00 0.00 0.00 0.74 0.00 2.44 9.34 1.40 0.00 2.51 12.95 61 I9_AR8 ActiveIntronRegion 0 6.65 0.58 3.68 1.36 22.55 0.00 8.32 1.73 5.29 2.29 0.00 1.24 0.00 0.00 0.00 2.97 0.00 1.85 14.11 2.13 0.00 4.17 13.42 62 I9_AR9 ActiveIntronRegion 0 5.48 3.44 5.53 6.79 9.64 0.56 10.69 2.40 5.42 1.87 0.00 0.98 0.00 0.00 0.89 0.73 0.00 1.42 4.34 5.93 1.35 1.79 18.88 63 I9_SR4 SilentIntronRegion 0 37.15 12.05 6.51 4.96 12.65 0.69 10.63 4.46 3.93 1.92 0.00 0.90 0.47 0.05 0.00 0.45 0.00 1.59 4.48 7.21 1.16 1.72 14.95 64 I9_AR10 ActiveIntronRegion 0 12.44 10.06 7.20 3.96 10.66 0.84 9.14 4.11 7.43 1.40 0.00 0.32 1.06 0.00 0.00 0.00 0.00 0.48 3.99 11.16 0.79 2.47 15.56 65 ER10a ExonRegion 0 0.00 13.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.55 0.05 0.30 0.00 66 E10a_E11a KnownJunction 0 0.00 29.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.61 0.00 0.00 0.00 67 ER11a ExonRegion 0 3.44 26.09 5.72 3.74 8.03 5.23 7.63 5.77 20.21 6.16 2.61 9.49 0.00 2.47 0.00 1.39 4.21 7.78 11.72 66.25 8.18 122.20 94.78 68 E11a_E12a KnownJunction 0 0.00 39.53 0.00 5.19 14.01 6.81 9.89 13.31 17.85 0.00 7.79 6.30 0.00 0.00 0.00 11.36 4.11 6.84 17.13 93.89 3.15 157.98 122.58 69 ER12a ExonRegion 0 0.75 30.60 4.92 3.90 3.46 5.33 13.48 16.53 21.21 9.22 3.61 24.30 0.00 3.68 0.00 3.23 5.36 7.00 15.17 96.53 19.17 250.05 109.39 70 E12a_E13a KnownJunction 0 3.04 31.77 3.49 8.06 3.48 2.90 13.12 19.02 18.89 9.19 0.00 12.60 0.00 4.41 0.00 4.36 8.70 4.15 17.69 114.80 11.61 254.85 84.59 71 ER13a ExonRegion 0 1.03 58.77 5.84 8.00 11.68 3.48 16.25 15.89 29.27 12.26 2.23 32.01 0.00 4.00 0.00 3.12 5.70 12.71 18.76 122.39 26.27 311.60 128.59 72 E13a_E14a KnownJunction 0 2.82 82.68 1.77 11.79 11.63 14.93 9.76 3.98 27.46 6.55 9.79 41.11 6.01 2.12 0.00 7.01 4.77 4.64 14.40 97.47 37.19 301.51 71.62 73 ER14a ExonRegion 0 6.05 66.54 8.92 6.98 8.37 7.90 19.75 14.04 32.20 13.42 4.11 30.75 0.00 4.61 0.00 1.35 4.28 7.91 22.22 88.27 21.00 260.44 114.16 74 E14a_E15a KnownJunction 0 3.78 84.46 6.39 10.09 7.89 0.00 6.67 21.28 41.17 7.87 1.95 30.91 0.00 4.59 0.00 0.00 4.58 2.40 21.84 105.85 22.49 197.91 86.73 75 ER15a ExonRegion 0 2.18 114.84 4.25 4.05 6.37 3.61 13.68 20.31 34.84 10.07 2.98 25.89 1.97 2.37 0.00 1.43 8.95 2.85 25.39 95.02 13.02 227.46 98.50 76 E15a_E16a KnownJunction 0 6.37 169.58 3.37 5.39 16.72 5.74 17.80 19.22 37.64 7.82 5.00 52.67 0.00 2.47 0.00 0.00 0.00 2.28 27.48 74.72 8.83 202.99 114.39 77 I15_SR2 SilentIntronRegion 0 1.27 3.98 3.40 0.13 1.10 0.35 2.64 0.97 3.32 0.40 0.12 0.94 0.00 0.13 0.00 0.09 0.00 1.10 0.60 4.57 0.90 10.99 6.76 78 E16_Aa NovelBoundary 0 3.26 20.52 12.65 0.00 4.07 0.00 0.00 0.00 5.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 11.12 0.00 5.33 3.59 79 ER16a ExonRegion 0 9.37 134.06 11.22 3.68 27.14 9.18 22.48 23.13 40.49 8.72 2.38 29.22 2.12 1.09 0.00 3.37 5.05 3.50 14.18 117.23 6.61 218.97 127.51 80 E16a_E17a KnownJunction 0 10.00 137.15 8.93 3.30 19.19 12.78 24.78 30.85 52.20 11.01 7.79 37.66 6.82 2.47 0.00 4.36 8.88 1.66 3.76 165.48 5.87 284.80 158.26 81 ER17a ExonRegion 0 7.69 101.08 8.13 0.50 19.14 7.74 16.73 20.91 39.65 11.78 3.61 25.52 0.53 3.13 0.00 3.14 5.02 7.00 4.43 118.80 13.19 192.78 127.40 82 E17a_E18a KnownJunction 0 13.56 161.75 13.19 0.00 26.15 15.45 18.95 16.14 39.87 7.74 5.26 6.30 0.00 0.00 0.00 0.00 4.30 8.71 4.80 110.96 22.80 201.58 172.69 83 I17_SR1 SilentIntronRegion 0 0.00 3.29 7.38 0.00 1.08 0.00 4.29 2.12 3.42 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 1.29 1.72 0.45 6.28 14.56 84 E18_Aa NovelBoundary 0 0.00 9.01 7.98 0.00 12.39 0.00 6.09 1.56 6.39 1.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.58 3.26 0.00 13.72 18.44 85 ER18a ExonRegion 0 5.18 74.61 9.74 0.23 11.90 12.17 14.18 10.32 30.46 9.80 0.65 17.44 1.08 2.64 0.00 1.66 3.95 14.56 8.01 104.12 25.25 164.86 145.76 86 E18a_E19a KnownJunction 0 7.19 68.67 7.57 2.06 4.33 18.80 23.01 6.90 35.91 12.63 4.74 6.00 0.00 0.00 0.00 0.00 4.58 14.22 8.38 114.09 30.15 185.48 153.31 87 ER19a ExonRegion 0 6.25 47.50 8.45 1.56 13.72 10.59 16.75 12.19 28.89 11.69 1.05 9.57 0.00 2.79 0.50 1.60 3.32 16.08 16.71 94.08 22.10 162.64 133.72 88 E19_Da KnownBoundary 0 14.00 65.45 6.27 6.39 29.12 2.38 17.53 19.26 26.24 16.28 0.00 33.31 0.00 2.47 0.00 4.36 3.46 7.71 22.21 113.01 14.58 162.39 176.19 89 ER19b ExonRegion 0 4.41 13.14 2.35 1.13 3.05 1.66 2.66 2.52 1.56 1.20 0.00 0.76 0.16 0.04 0.11 0.15 0.12 0.75 1.66 5.25 1.11 23.46 10.21