Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 KIF2A Gene 0 77.59 289.47 86.96 107.46 182.21 151.26 211.90 167.71 204.45 218.39 295.82 483.14 360.95 268.07 130.58 188.73 316.43 154.66 110.44 303.24 64.93 110.12 62.24 2 401507 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 230731 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 381103 Transcript 0 25.72 56.82 24.54 37.27 50.13 33.27 57.89 40.27 54.26 44.75 38.69 85.15 66.02 29.80 20.06 24.13 40.61 19.81 20.33 56.47 6.98 21.03 10.76 5 407818 Transcript 0 17.64 140.01 99.70 103.83 173.59 201.65 195.45 189.25 233.92 296.22 2.07 10.09 5.97 1.40 0.74 4.43 9.91 173.54 68.56 370.57 2.29 1.57 0.85 6 ER1a ExonRegion 0 0.00 0.61 0.00 0.00 0.80 1.04 1.72 0.00 1.98 2.03 11.51 2.07 0.00 10.65 1.16 6.37 19.51 5.01 0.14 11.23 6.61 0.67 2.06 7 E1_Ab KnownBoundary 0 0.00 3.35 0.00 0.00 4.33 0.00 6.36 0.00 3.39 2.69 38.96 0.00 0.00 33.96 0.00 12.99 85.27 13.39 0.00 37.07 24.34 3.12 3.59 8 ER1b ExonRegion 0 1.78 5.37 0.54 0.41 1.34 3.34 5.78 2.19 4.62 3.81 22.65 7.60 6.44 27.00 3.75 17.02 38.17 5.68 4.56 19.82 11.16 2.81 6.00 9 E1_Ac KnownBoundary 0 20.67 36.44 7.21 4.59 15.45 20.61 44.07 22.30 41.52 24.18 44.17 6.15 26.95 98.53 48.46 104.67 90.70 44.77 12.05 112.69 25.02 24.37 53.69 10 ER1c ExonRegion 1 71.76 180.19 45.12 40.98 109.20 178.32 146.47 79.92 123.23 132.70 304.57 82.16 130.65 245.38 75.78 450.24 403.02 326.92 171.55 381.33 111.76 90.91 134.56 11 E1a_E2a KnownJunction 0 0.00 10.06 0.00 0.00 0.00 0.00 0.00 1.56 0.00 1.26 0.00 0.00 0.00 0.00 0.00 4.36 8.23 0.00 0.00 0.00 0.00 0.00 0.00 12 E1a_E3a KnownJunction 1 64.31 93.93 77.05 92.93 65.87 99.77 74.86 144.01 199.85 202.86 228.85 146.00 319.13 169.46 65.64 243.01 297.62 381.70 139.11 319.33 85.25 113.28 108.67 13 E2_Aa NovelBoundary 0 63.86 18.02 32.91 30.40 29.20 5.79 45.40 27.36 15.91 12.92 7.95 37.51 65.90 5.12 15.33 0.00 22.72 8.62 8.56 28.57 0.00 0.00 10.93 14 ER2a ExonRegion 0 23.92 15.56 10.56 16.83 5.13 2.32 32.03 11.52 13.55 6.50 9.99 26.13 23.33 4.26 7.29 12.40 20.44 9.53 8.79 18.05 4.42 1.58 6.65 15 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 4.33 0.00 2.25 1.97 3.33 4.43 7.37 0.00 6.33 2.12 0.00 0.00 9.16 1.74 0.00 3.00 0.00 0.00 0.00 16 I2 Intron 0 15.54 10.52 8.07 12.61 13.36 2.92 23.35 9.92 7.73 7.35 3.95 20.28 16.66 2.55 7.98 7.86 12.44 5.14 5.43 12.92 1.74 1.04 3.30 17 I2_AR1 ActiveIntronRegion 0 17.21 10.77 12.18 15.92 16.58 4.01 41.88 12.85 11.38 10.31 2.87 40.41 38.33 1.87 12.25 10.53 22.49 3.14 7.62 21.28 1.85 0.78 4.31 18 I2_AR2 ActiveIntronRegion 0 17.74 9.34 7.11 10.74 14.15 6.95 28.80 11.05 6.61 5.97 4.82 18.10 11.93 3.02 12.35 15.13 20.10 3.03 7.95 17.42 2.42 0.21 4.98 19 I2_SR3 SilentIntronRegion 0 24.45 15.87 8.57 11.63 18.25 2.26 26.19 9.90 6.62 7.85 2.33 14.95 14.07 2.02 9.85 7.70 13.42 4.18 7.17 11.67 1.17 0.06 3.04 20 I2_AR7 ActiveIntronRegion 0 190.21 26.54 19.41 18.79 35.07 2.12 29.09 14.06 14.37 23.27 9.51 11.17 19.87 1.88 12.37 9.62 24.84 17.80 5.36 28.84 1.22 0.00 1.08 21 I2_AR8 ActiveIntronRegion 0 51.27 13.72 17.32 15.79 28.66 3.60 34.50 11.25 11.70 9.12 5.14 22.38 18.89 2.37 16.49 7.57 20.96 9.78 2.60 19.93 1.23 1.80 3.01 22 I2_SR4 SilentIntronRegion 0 16.66 11.05 10.01 15.68 17.25 4.51 31.60 11.10 9.79 8.83 4.13 27.13 22.58 2.24 9.17 7.81 15.63 4.16 5.63 15.29 1.56 0.73 3.52 23 I2_AR9 ActiveIntronRegion 0 14.42 7.90 13.15 22.62 14.25 3.88 30.45 18.61 19.06 19.68 10.58 29.58 35.44 3.22 12.94 16.00 21.92 10.56 14.54 23.00 3.18 2.05 9.24 24 I2_AR12 ActiveIntronRegion 0 30.80 20.48 32.28 47.24 25.12 4.24 28.82 40.28 21.03 28.13 6.58 20.11 19.60 4.99 6.96 6.87 12.15 8.12 2.60 20.26 0.90 1.70 1.20 25 I2_SR6 SilentIntronRegion 0 20.53 18.52 8.67 16.59 23.74 2.88 28.02 13.25 12.07 10.06 6.07 24.12 18.45 3.83 11.10 10.04 13.09 5.20 6.63 12.86 1.56 1.80 4.61 26 I2_AR14 ActiveIntronRegion 0 15.65 15.45 8.26 15.66 16.18 4.62 20.62 8.70 9.07 6.80 5.17 27.14 18.05 3.77 4.95 9.38 13.07 4.28 8.08 11.99 1.39 1.98 2.48 27 I2_SR8 SilentIntronRegion 0 16.90 8.01 7.23 9.91 6.41 3.78 16.24 13.76 9.47 7.90 11.17 13.53 17.05 5.13 12.66 15.78 20.66 16.63 9.29 21.50 6.86 2.71 6.56 28 I2_AR17 ActiveIntronRegion 0 20.75 8.42 4.48 6.64 5.04 0.83 13.75 17.98 11.28 6.26 7.51 16.61 13.53 5.66 14.61 19.44 25.11 17.82 9.58 22.19 2.77 2.06 6.24 29 ER3a ExonRegion 0 28.52 64.60 66.45 57.59 78.50 72.71 95.16 105.33 187.48 187.74 420.70 280.59 358.76 239.99 62.21 169.91 496.07 230.15 102.20 376.84 120.32 81.54 74.03 30 E3a_E4a KnownJunction 0 40.23 46.77 78.92 69.95 74.79 69.56 123.48 146.43 279.45 268.11 710.29 349.61 323.52 423.75 141.42 321.28 904.07 319.73 192.19 660.71 217.64 143.04 151.95 31 ER4a ExonRegion 0 28.61 100.70 100.49 94.88 96.95 89.84 121.72 169.10 244.91 275.72 471.85 526.54 554.56 501.11 127.27 502.71 604.45 378.36 181.27 615.69 145.85 155.01 149.43 32 E4a_E5a KnownJunction 1 16.60 180.30 86.57 74.88 194.31 301.47 246.07 132.71 212.79 238.48 345.03 597.94 1209.34 466.07 137.71 290.78 563.35 166.52 145.89 487.82 137.02 116.22 49.85 33 ER5a ExonRegion 0 28.67 262.92 69.87 61.21 133.79 213.75 228.64 123.79 181.56 218.12 432.79 731.99 905.43 445.89 137.47 232.15 543.03 161.22 85.31 444.22 169.33 99.14 66.74 34 E5a_E6a KnownJunction 0 30.82 413.68 62.45 62.06 163.92 183.81 252.12 121.00 152.31 187.74 350.35 587.29 745.73 493.09 151.43 216.10 485.83 185.09 79.06 476.63 160.31 120.39 55.49 35 ER6a ExonRegion 0 66.16 431.65 70.99 87.06 110.08 117.35 155.66 144.14 185.53 197.39 308.02 569.31 431.64 342.15 109.26 217.40 385.88 239.46 119.44 416.24 112.26 98.21 64.56 36 E6a_E7a KnownJunction 0 49.27 416.64 56.53 114.37 156.20 91.54 205.58 132.55 173.38 163.05 228.64 453.60 478.70 239.21 73.43 155.17 227.12 84.56 54.78 342.98 49.36 56.21 28.34 37 ER7a ExonRegion 1 64.00 236.90 95.28 128.04 204.81 145.43 228.97 172.35 220.32 213.47 291.66 850.12 1070.81 453.77 149.23 242.77 467.32 127.70 101.84 482.58 74.49 124.95 71.06 38 E7a_E8a KnownJunction 0 50.08 251.53 77.23 145.27 161.97 150.31 277.25 163.39 244.18 212.13 394.84 844.33 746.54 403.73 155.76 300.95 568.49 148.28 156.62 575.06 75.99 211.75 73.58 39 ER8a ExonRegion 0 40.74 342.64 64.82 87.44 162.05 135.07 244.08 149.37 212.71 188.08 285.30 792.11 590.55 304.40 106.47 166.87 330.61 89.21 63.21 371.47 35.72 138.49 54.79 40 E8a_E9a KnownJunction 0 88.53 761.31 58.19 90.76 199.15 136.97 343.01 141.99 213.42 214.28 402.79 568.24 720.89 319.33 117.19 153.29 372.04 56.00 76.05 471.84 46.95 158.35 51.30 41 ER9a ExonRegion 0 52.41 512.65 44.09 80.91 146.39 113.83 202.85 142.90 192.54 183.67 383.66 768.36 810.01 339.77 146.38 146.61 368.44 62.89 99.04 382.40 40.91 126.64 58.57 42 E9a_E10a KnownJunction 0 10.08 343.75 34.27 67.92 102.38 111.07 168.26 139.36 190.13 161.98 336.40 857.38 536.00 391.26 109.77 159.19 344.55 51.07 102.50 285.01 28.48 138.94 77.85 43 E9a_E11a NovelJunction 0 0.00 42.89 0.00 0.00 0.00 0.00 0.00 0.00 3.99 2.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.63 0.00 0.00 0.00 44 ER10a ExonRegion 0 48.38 206.04 37.63 74.70 142.80 133.07 219.77 150.83 208.10 201.63 410.85 866.61 609.13 351.22 123.17 177.09 379.74 88.11 91.42 342.08 36.85 139.10 53.92 45 E10a_E11a KnownJunction 0 75.57 206.34 37.43 81.24 229.12 232.25 283.61 156.20 236.75 225.24 433.90 813.26 499.48 351.94 165.65 172.52 452.73 89.50 97.60 373.98 73.52 128.41 69.57 46 ER11a ExonRegion 0 48.77 204.79 57.47 96.30 186.74 178.79 258.89 133.19 196.30 224.58 420.22 975.51 710.15 374.12 123.00 185.45 501.85 100.27 109.84 354.59 58.92 147.27 76.51 47 E11a_E12a KnownJunction 0 71.64 236.93 78.92 104.32 290.83 172.97 254.16 141.79 194.67 254.46 494.91 792.11 655.80 301.78 140.06 213.88 519.03 116.86 114.64 348.67 36.20 154.55 73.58 48 ER12a ExonRegion 0 51.99 194.62 54.53 92.02 240.11 212.00 264.28 144.54 179.75 239.67 434.54 843.77 599.22 332.87 135.59 192.77 446.81 130.56 95.66 347.17 49.10 124.59 55.52 49 E12a_E13a KnownJunction 0 51.49 226.67 66.53 107.58 253.57 215.96 438.71 144.83 190.10 230.34 371.41 941.71 739.72 377.42 114.10 200.46 488.36 123.37 114.45 366.12 44.17 122.41 64.62 50 ER13a ExonRegion 0 47.09 213.28 71.22 109.18 227.38 224.14 392.87 137.52 197.22 237.11 424.69 789.70 458.55 363.22 130.21 222.46 425.21 134.62 114.33 370.51 56.99 140.16 88.51 51 E13a_E14a KnownJunction 0 90.09 322.64 85.89 116.83 222.41 185.18 460.93 149.63 192.10 265.42 432.00 773.95 432.28 415.57 132.89 261.21 409.07 173.69 98.54 350.59 71.35 133.98 79.90 52 ER14a ExonRegion 0 70.78 229.87 74.64 91.22 200.77 190.42 287.14 175.00 209.49 230.02 426.45 782.27 457.36 398.52 141.03 266.64 482.62 214.57 170.07 409.82 107.12 124.68 81.61 53 E14a_E15a KnownJunction 0 67.57 221.21 88.05 97.99 141.00 200.68 232.74 200.48 221.15 226.53 384.52 760.15 290.08 383.31 209.28 279.07 511.45 275.83 131.58 468.39 131.34 113.10 83.14 54 ER15a ExonRegion 0 70.47 191.43 77.68 82.81 181.62 174.82 297.62 173.99 214.45 230.84 476.19 704.39 325.28 423.67 145.35 304.87 511.78 253.93 167.83 370.50 130.98 135.90 80.23 55 E15a_E16a KnownJunction 1 84.24 200.29 78.00 85.74 161.21 140.66 354.49 175.18 231.94 256.77 610.52 664.72 221.09 374.42 155.51 358.11 641.42 257.67 158.50 355.76 129.30 119.28 85.19 56 ER16a ExonRegion 0 70.59 160.89 65.86 76.70 192.51 185.53 248.76 181.41 223.61 252.11 490.24 605.42 276.29 383.82 151.39 312.21 488.74 236.41 175.25 341.75 90.33 181.47 78.26 57 E16a_E17a KnownJunction 0 89.20 145.43 93.17 80.84 287.86 181.09 234.68 198.14 233.50 249.63 501.55 616.40 300.47 480.49 171.46 384.69 540.16 238.32 141.84 376.98 123.68 186.21 75.63 58 ER17a ExonRegion 0 75.01 108.71 98.37 101.90 207.84 200.15 245.11 199.48 246.77 272.96 533.76 489.61 266.23 489.36 168.14 286.81 549.31 256.54 159.22 372.25 123.96 134.75 81.84 59 E17a_E18a KnownJunction 0 10.45 126.75 95.80 111.27 185.14 257.86 251.95 226.40 262.03 307.78 0.00 6.00 0.00 0.00 0.00 0.00 8.51 177.71 94.50 458.29 2.53 0.00 0.00 60 E17a_E19a KnownJunction 0 93.28 0.00 19.28 12.45 93.63 26.35 90.36 21.89 16.67 15.45 493.81 429.74 314.27 508.33 156.62 279.76 556.43 35.53 35.39 20.77 102.61 161.90 63.60 61 E18_Aa NovelBoundary 0 20.15 45.52 13.87 41.39 41.00 38.95 59.71 21.03 33.59 35.05 18.95 23.71 40.58 4.94 9.64 7.43 20.48 22.05 0.00 52.16 3.03 5.63 7.77 62 ER18a ExonRegion 0 26.40 137.20 85.51 78.09 129.00 171.56 167.04 167.10 201.81 265.36 6.22 24.27 17.90 4.20 2.21 13.30 16.65 125.36 72.03 371.80 1.93 4.72 2.55 63 E18a_E19a KnownJunction 0 16.08 156.09 117.80 122.13 206.62 175.52 167.38 174.24 237.90 315.52 0.00 0.00 0.00 0.00 0.00 0.00 4.58 217.55 39.15 281.62 2.41 0.00 0.00 64 I18_AR1 ActiveIntronRegion 0 10.77 26.38 12.08 22.47 19.40 9.80 29.30 11.79 9.60 17.61 8.60 13.99 10.91 6.76 5.10 13.61 16.37 12.87 6.08 15.69 2.80 7.15 4.48 65 E19_Aa NovelBoundary 0 3.33 17.89 19.13 37.56 11.54 5.62 34.67 20.04 15.89 35.73 10.42 11.10 6.01 9.54 4.45 4.02 4.77 9.45 0.00 18.92 10.69 6.06 0.00 66 ER19a ExonRegion 0 104.33 247.06 106.89 114.91 231.80 215.00 315.50 217.08 236.50 306.41 457.42 479.88 327.62 430.82 187.99 305.38 518.79 273.16 165.66 381.60 110.87 159.08 86.80 67 E19a_E20a KnownJunction 0 72.90 262.85 77.73 90.13 362.39 378.53 458.59 183.60 248.29 330.29 533.77 540.33 554.67 534.52 235.74 232.50 575.50 166.73 120.29 351.16 146.04 141.57 91.59 68 ER20a ExonRegion 0 112.74 286.48 102.99 115.93 319.49 297.26 351.93 238.41 261.94 327.09 469.43 562.70 506.43 402.96 180.90 269.76 526.56 237.13 106.96 369.94 84.00 138.57 91.09 69 E20a_E21a KnownJunction 0 153.21 364.28 147.10 193.05 319.61 343.50 397.86 335.41 311.46 344.24 499.49 887.39 719.60 395.43 212.00 460.65 489.95 351.69 226.74 354.87 70.24 164.78 123.18 70 ER21a ExonRegion 0 127.99 281.65 152.77 195.89 319.57 270.67 348.20 315.13 341.19 392.11 551.50 861.50 586.56 496.10 263.89 365.72 549.79 316.98 236.28 473.59 105.41 185.28 114.08 71 E21a_E22a KnownJunction 0 183.88 322.18 186.87 205.37 449.66 306.13 420.43 356.60 307.52 373.78 526.71 803.36 621.23 536.17 259.97 313.93 576.06 345.22 219.11 492.61 98.97 179.17 141.11 72 I21 Intron 0 15.75 9.09 5.22 10.32 14.19 3.41 11.91 6.79 6.18 5.74 2.41 4.15 8.96 2.65 4.85 3.38 5.68 3.42 2.03 5.91 0.98 3.53 1.47 73 I21_SR1 SilentIntronRegion 0 20.80 16.39 4.12 12.88 27.51 2.31 17.38 3.92 7.49 5.56 3.77 9.43 17.41 2.88 3.40 1.12 8.46 1.36 5.52 6.23 0.93 5.40 1.78 74 I21_AR1 ActiveIntronRegion 0 17.99 21.35 5.51 17.04 14.72 1.83 28.69 12.10 13.38 3.63 4.83 0.72 18.76 2.44 2.90 0.00 8.25 2.46 9.56 6.38 2.20 7.64 2.94 75 I21_SR2 SilentIntronRegion 0 15.87 8.60 5.58 10.49 12.78 3.70 11.99 7.04 5.78 5.86 2.08 3.56 7.82 2.88 5.25 3.65 5.56 3.54 2.02 6.26 0.91 3.19 1.57 76 E22_Aa NovelBoundary 0 37.34 11.31 13.51 13.72 3.57 4.43 25.00 28.75 17.53 9.35 4.84 16.66 26.30 2.47 15.82 11.19 17.58 6.76 0.00 7.73 2.66 0.00 7.51 77 ER22a ExonRegion 0 163.75 343.02 163.03 195.42 299.67 323.49 361.71 329.74 344.58 387.21 505.06 801.79 516.91 491.67 264.53 372.95 535.50 363.57 253.95 433.75 164.59 181.81 117.63 78 E22_Da KnownBoundary 0 164.55 397.63 126.99 131.22 277.00 266.49 371.41 280.37 272.86 323.28 541.93 789.71 416.53 394.73 200.26 269.93 486.68 242.75 143.25 382.54 156.36 189.64 66.58 79 ER22b ExonRegion 0 163.50 439.63 127.57 157.90 286.53 234.31 355.98 300.17 307.72 363.14 528.49 835.77 668.13 455.23 242.44 304.21 476.57 270.43 175.26 384.48 145.90 189.64 100.15 80 E22_Db KnownBoundary 0 179.22 488.53 121.82 175.37 399.32 262.52 429.08 286.08 313.05 378.81 556.67 967.07 545.26 569.55 400.27 330.34 461.24 222.98 224.67 376.09 118.37 188.05 131.29 81 ER22c ExonRegion 0 138.57 791.10 148.59 156.60 260.74 168.82 224.42 257.23 271.50 321.22 333.02 505.91 383.95 298.79 251.09 210.89 327.79 169.53 128.41 318.12 63.07 147.42 73.95 82 E22_Dc KnownBoundary 1 114.39 275.48 81.84 91.46 134.38 124.76 174.62 148.32 224.62 155.93 66.86 430.34 343.97 91.53 54.39 56.65 79.94 29.10 56.00 128.35 10.69 102.63 16.22 83 ER22d ExonRegion 0 78.97 201.65 87.61 132.25 191.07 130.78 197.26 146.02 200.17 166.82 137.41 314.47 234.43 112.82 72.95 79.77 124.59 67.98 72.54 204.85 23.51 82.54 36.38