Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PPAP2A Gene 0 304.19 78.36 173.15 244.95 160.06 109.27 55.62 106.37 268.97 62.04 11.32 26.42 41.21 48.69 50.80 22.44 18.01 16.99 27.17 22.85 88.19 119.84 78.51 2 307259 Transcript 0 248.91 81.95 248.42 353.58 190.59 177.55 43.18 119.25 380.82 88.78 17.77 23.06 37.14 62.41 67.48 28.18 32.48 10.07 13.50 14.20 95.16 193.04 110.86 3 264775 Transcript 0 10.37 0.00 9.40 20.28 15.11 27.60 2.25 3.66 26.16 3.01 0.00 0.00 0.00 4.89 10.38 0.00 0.00 0.00 3.76 0.00 7.60 0.00 0.00 4 396876 Transcript 0 5.29 0.00 6.74 9.54 5.35 10.09 3.31 4.32 11.12 2.87 0.97 0.00 0.00 3.25 4.35 0.00 0.00 0.00 1.59 0.00 2.20 2.08 0.00 5 ER1a ExonRegion 0 41.39 15.81 46.78 49.32 35.33 56.44 16.99 23.66 82.79 23.66 4.99 2.26 4.43 28.23 28.08 10.82 9.07 10.23 13.16 11.25 45.54 38.99 41.99 6 E1a_E2b KnownJunction 0 10.37 0.00 9.40 20.28 15.11 27.60 2.25 3.66 26.16 3.01 0.00 0.00 0.00 4.89 10.38 0.00 0.00 0.00 3.76 0.00 7.60 0.00 0.00 7 E1a_E3a KnownJunction 0 114.98 42.36 190.21 223.45 119.44 249.63 29.15 82.02 259.72 61.46 14.32 6.90 20.45 44.62 40.42 15.64 26.27 12.39 12.52 15.85 111.88 125.47 91.59 8 E1a_E4a NovelJunction 0 14.89 40.12 14.40 10.95 14.35 10.56 17.40 10.51 34.29 7.79 0.00 0.00 0.00 2.47 0.00 0.00 0.00 8.83 4.61 2.75 5.93 3.12 0.00 9 I1_AR4 ActiveIntronRegion 0 4.23 0.00 2.45 14.62 4.62 0.00 12.64 1.73 10.11 0.63 0.00 0.00 17.91 0.00 0.00 0.00 0.00 0.00 0.00 5.03 0.00 0.00 2.94 10 I1_AR5 ActiveIntronRegion 0 2.79 0.00 4.46 13.79 6.42 2.13 14.93 1.73 12.85 1.15 0.00 0.00 15.38 0.00 0.00 0.00 3.30 1.18 3.19 6.47 0.00 1.25 2.94 11 I1_AR11 ActiveIntronRegion 0 13.52 17.93 12.12 16.97 11.36 3.00 10.84 22.55 31.97 8.94 0.46 2.33 4.81 0.58 2.74 2.85 3.04 4.02 1.35 9.14 1.39 1.65 2.83 12 I1_AR12 ActiveIntronRegion 0 7.26 11.37 5.68 6.17 35.00 5.88 14.62 6.46 14.59 3.60 0.00 0.00 0.00 0.00 0.00 2.91 1.41 0.00 2.28 4.34 1.57 1.57 2.58 13 I1_SR7 SilentIntronRegion 0 12.79 9.38 11.10 17.42 18.96 2.83 19.92 22.83 26.43 10.39 0.00 0.00 4.75 0.02 5.14 0.51 0.83 1.95 1.59 5.88 1.44 1.14 5.38 14 ER2a ExonRegion 0 5.29 0.00 6.74 9.54 5.35 10.09 3.31 4.32 11.12 2.87 0.97 0.00 0.00 3.25 4.35 0.00 0.00 0.00 1.59 0.00 2.20 2.08 0.00 15 ER2b ExonRegion 0 33.81 12.49 25.02 39.22 16.73 8.49 8.08 18.71 48.78 13.41 2.71 0.00 3.87 4.83 9.65 1.83 1.09 3.66 5.67 9.01 8.96 8.78 6.31 16 E2_Da NovelBoundary 0 13.85 16.25 1.83 32.73 14.43 0.00 20.67 11.62 28.73 10.31 0.00 5.55 0.00 0.00 4.45 4.36 4.21 4.60 18.92 5.69 2.66 0.00 0.00 17 E2a_E4a KnownJunction 0 31.49 8.49 1.60 26.27 7.72 5.68 3.93 6.00 24.39 1.24 2.16 0.00 0.00 2.47 16.44 3.42 0.00 0.00 4.52 2.75 11.80 3.12 4.35 18 I2_AR1 ActiveIntronRegion 0 19.95 14.75 12.80 8.84 21.34 7.54 16.96 6.85 22.69 5.37 0.00 0.00 1.87 0.97 4.66 0.72 1.60 1.78 6.16 7.71 1.60 1.01 4.24 19 I2_AR5 ActiveIntronRegion 0 16.15 5.97 13.47 17.65 23.67 4.45 17.80 14.06 26.79 3.51 0.00 1.83 4.10 1.24 4.07 1.67 2.25 1.32 2.94 6.48 1.13 1.92 3.21 20 E3_Aa NovelBoundary 0 42.90 2.70 12.06 18.11 79.20 16.47 42.31 20.66 38.98 3.33 2.68 12.60 0.00 5.47 4.45 3.76 4.77 2.11 9.60 15.47 0.00 0.00 3.67 21 ER3a ExonRegion 0 243.59 69.18 245.53 331.12 167.43 118.64 57.74 130.16 429.67 95.00 21.47 25.98 31.23 65.67 87.23 28.92 27.21 11.20 10.86 18.20 90.34 207.17 110.55 22 E3a_E4a KnownJunction 0 388.14 134.32 309.51 506.16 284.89 164.39 42.66 145.57 453.06 109.89 17.53 36.31 59.74 76.93 74.79 39.99 43.95 6.63 17.13 8.56 83.28 246.46 130.43 23 E4_Aa NovelBoundary 0 38.97 6.05 10.20 13.88 32.68 2.27 25.70 15.73 17.48 9.80 2.21 0.00 6.49 4.24 5.07 0.00 8.51 4.52 0.00 11.06 0.00 2.94 3.16 24 ER4a ExonRegion 0 308.84 128.70 382.68 602.51 394.20 219.31 112.38 231.80 636.19 132.06 21.61 66.07 106.59 95.00 101.64 46.72 36.85 32.54 55.52 50.62 175.21 281.01 150.71 25 E4_Da NovelBoundary 0 3.48 2.63 13.10 29.27 15.96 5.79 25.22 8.17 13.51 1.32 0.00 0.00 20.29 0.00 6.30 0.00 0.00 0.00 0.00 8.12 0.00 3.12 0.00 26 E4a_E5a KnownJunction 0 465.64 194.70 395.79 685.29 700.34 352.92 183.32 280.29 612.87 114.22 35.17 99.63 164.76 144.51 121.15 75.79 26.55 46.05 181.28 49.60 256.68 374.20 226.13 27 E5_Aa NovelBoundary 0 25.93 6.64 6.45 23.74 22.92 8.06 8.57 9.73 17.74 7.98 0.00 0.00 5.84 4.65 15.95 7.78 0.00 0.00 9.04 21.35 0.00 2.45 4.35 28 ER5a ExonRegion 0 448.99 151.22 394.29 601.43 513.84 316.01 143.51 268.06 582.51 110.76 20.83 77.93 120.08 98.88 109.60 46.99 33.75 46.48 95.95 41.09 258.67 218.91 176.20 29 E5a_E6a KnownJunction 1 821.70 183.78 450.49 685.19 486.16 305.96 132.44 266.86 608.73 115.26 11.42 95.88 162.49 114.07 135.86 48.19 39.83 57.25 55.53 47.30 237.41 156.88 170.47 30 I5 Intron 0 17.98 25.27 17.83 22.94 27.57 10.20 23.75 17.61 24.61 12.99 3.03 8.64 16.49 4.04 7.78 9.58 7.64 18.34 17.56 37.01 4.64 4.88 7.00 31 I5_AR1 ActiveIntronRegion 0 11.46 24.23 23.10 24.77 25.29 10.67 19.43 16.34 24.60 15.22 2.46 8.63 9.20 2.98 7.22 5.14 6.19 15.22 16.37 36.62 3.23 4.64 3.84 32 I5_SR2 SilentIntronRegion 0 13.30 29.50 19.71 17.57 19.67 10.94 20.58 12.56 26.09 12.13 1.68 4.76 14.73 4.45 6.42 6.26 6.54 12.02 14.14 33.18 3.29 4.36 5.57 33 I5_AR2 ActiveIntronRegion 0 10.25 19.51 14.05 21.41 25.34 8.92 21.22 11.68 21.10 8.83 2.82 6.45 13.04 3.66 5.78 9.03 7.19 19.49 13.91 29.63 5.48 3.73 5.57 34 I5_SR3 SilentIntronRegion 0 26.37 31.87 20.73 28.48 34.63 12.42 30.53 23.80 28.64 16.46 4.11 11.15 21.50 5.00 9.41 13.33 9.73 23.99 23.30 46.23 5.86 6.58 9.44 35 I5_AR3 ActiveIntronRegion 0 25.22 19.68 16.83 17.74 29.04 10.04 28.80 22.72 29.35 10.73 3.37 14.28 19.28 6.58 11.27 9.13 3.81 7.16 15.92 37.97 1.82 4.07 6.35 36 E6_Aa NovelBoundary 0 36.82 2.76 28.92 26.47 50.08 14.99 41.16 17.25 21.99 5.18 2.42 7.65 12.99 9.30 0.00 23.58 9.16 4.68 22.49 44.42 7.85 3.12 15.62 37 ER6a ExonRegion 0 1022.03 206.28 421.04 573.32 368.68 195.75 125.30 269.31 571.77 138.41 30.57 77.07 115.53 113.05 105.15 61.00 44.61 49.05 77.74 58.68 235.67 266.20 192.16 38 E6_Da NovelBoundary 0 19.48 44.07 13.66 29.43 43.29 2.84 19.83 6.70 28.04 17.70 7.00 0.00 20.94 10.01 4.45 12.30 13.56 11.19 18.26 49.79 0.00 0.00 12.98 39 E6a_E7a KnownJunction 0 1171.76 367.43 344.64 463.41 401.02 204.54 131.52 258.81 517.24 139.60 20.27 77.13 73.70 105.25 93.83 40.16 59.75 29.97 28.14 28.63 184.59 229.26 142.39 40 I6 Intron 0 8.27 21.49 2.52 5.13 14.14 3.79 15.21 1.78 0.85 1.96 2.66 10.71 11.66 1.80 3.02 2.73 2.27 1.06 5.85 11.73 0.00 1.91 0.00 41 I6_AR1 ActiveIntronRegion 0 8.34 21.68 2.54 5.18 14.27 3.83 15.35 1.79 0.85 1.98 2.69 10.80 11.77 1.82 3.05 2.74 2.30 1.07 5.91 11.83 0.00 1.93 0.00 42 E7_Aa NovelBoundary 0 64.53 126.82 64.66 70.52 110.78 27.77 80.38 54.30 42.39 59.26 34.90 97.83 38.47 46.09 54.89 42.47 40.67 24.91 34.73 77.28 14.27 47.09 10.84 43 ER7a ExonRegion 0 386.31 79.07 82.07 103.77 70.39 69.77 38.97 55.79 108.46 30.17 2.87 10.81 17.54 20.77 18.07 7.11 6.64 5.30 9.54 8.58 29.22 47.57 31.75