Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ITGA1 Gene 0 64.81 32.91 153.24 148.84 162.52 112.50 107.45 139.57 109.41 98.58 19.93 77.15 87.40 14.83 23.58 12.53 32.05 57.51 0.55 30.54 3.61 132.04 42.71 2 282588 Transcript 0 41.35 28.07 122.91 96.68 124.16 107.40 95.47 109.68 108.72 99.42 33.28 104.17 134.82 22.68 28.45 19.27 54.01 73.35 0.55 37.41 5.60 142.12 57.77 3 ER1a ExonRegion 0 0.44 1.05 4.33 1.85 3.05 6.63 5.95 5.22 4.79 5.51 2.57 1.76 2.20 3.99 1.39 3.57 5.23 17.41 1.31 5.08 0.84 12.97 5.77 4 E1a_E2a KnownJunction 0 0.00 0.00 25.19 21.54 11.97 15.28 17.75 25.55 29.86 27.99 17.48 6.15 6.82 17.72 13.35 7.60 13.74 67.98 0.00 28.95 3.09 64.30 15.62 5 Ix_AR1 ActiveIntronRegion 0 1.82 0.22 7.54 3.13 5.55 2.55 8.47 6.02 8.42 3.94 4.40 16.12 9.96 2.51 1.13 3.86 4.94 9.75 0.68 9.34 0.47 3.95 2.63 6 Ix_AR2 ActiveIntronRegion 0 0.63 3.74 9.12 4.28 1.98 0.00 15.46 5.63 6.47 2.02 3.36 19.48 13.98 6.43 0.00 0.00 5.68 4.07 0.00 4.68 0.00 3.96 3.00 7 Ix_SR2 SilentIntronRegion 0 0.00 1.63 9.31 3.00 5.35 0.00 15.49 7.09 7.04 2.29 1.35 22.51 0.00 4.87 0.00 0.00 7.59 5.54 0.00 4.26 0.00 4.17 4.99 8 Ix_AR5 ActiveIntronRegion 0 2.38 0.78 12.61 5.99 7.47 1.31 7.98 11.49 11.66 3.63 2.38 22.16 14.73 0.91 1.52 1.73 0.00 1.73 0.00 6.59 0.00 4.56 1.01 9 Ix_AR6 ActiveIntronRegion 0 1.68 0.65 6.86 4.25 3.63 4.66 4.84 6.19 5.92 4.80 0.61 18.42 16.04 0.82 0.54 0.00 2.10 2.53 0.00 3.31 0.35 3.40 0.94 10 Ix_SR5 SilentIntronRegion 0 4.23 0.27 9.07 4.78 7.15 0.98 6.56 7.28 7.64 2.32 4.34 23.25 8.79 1.91 0.85 0.01 4.02 4.53 0.00 4.78 0.49 1.59 1.31 11 Ix_AR8 ActiveIntronRegion 0 4.07 1.12 5.01 5.04 7.87 0.95 9.65 4.99 9.34 2.76 4.67 19.99 5.82 1.04 1.83 2.33 4.67 3.73 0.00 5.20 1.17 3.50 0.66 12 Ix_SR6 SilentIntronRegion 0 2.75 0.77 11.00 10.09 8.01 1.34 10.82 7.22 10.39 3.84 2.97 18.48 10.30 1.03 3.40 2.76 5.33 2.75 0.00 6.15 0.42 5.78 2.93 13 Ix_SR7 SilentIntronRegion 0 5.76 2.10 33.33 13.14 10.38 2.49 9.51 13.37 10.00 4.90 3.87 12.42 6.34 3.47 2.29 1.60 4.62 8.87 0.45 5.75 0.73 3.68 2.68 14 Ix_AR10 ActiveIntronRegion 0 5.29 0.00 49.42 21.81 5.35 1.22 7.28 15.56 5.97 10.32 8.05 4.33 0.00 2.17 2.90 4.95 3.30 14.78 3.19 7.80 2.20 2.08 2.94 15 ER2a ExonRegion 0 8.96 9.41 30.31 25.26 35.60 52.41 40.58 35.51 45.29 38.54 17.65 39.22 24.11 18.94 9.06 11.84 30.28 70.81 0.00 34.32 5.35 97.12 48.78 16 E2a_E3a KnownJunction 0 10.15 0.00 53.43 24.31 58.57 100.11 40.10 72.41 66.98 53.56 19.11 87.78 55.03 26.31 8.90 19.74 45.35 67.78 0.00 37.01 8.40 123.26 25.35 17 ER3a ExonRegion 0 9.08 3.74 64.52 36.71 31.11 41.09 36.93 51.76 85.88 74.26 22.08 54.94 59.77 23.31 9.35 25.28 39.93 81.63 0.00 32.84 6.47 137.84 53.64 18 E3a_E4a KnownJunction 1 11.04 15.98 61.32 34.86 51.87 32.20 32.24 70.44 107.20 93.48 32.22 51.47 121.75 17.01 19.41 7.95 65.54 57.66 0.00 45.76 11.55 158.23 56.00 19 ER4a ExonRegion 0 7.61 11.31 56.95 42.59 53.33 48.96 45.97 56.50 89.46 78.60 36.51 97.49 87.06 29.62 14.31 19.34 43.91 62.55 0.00 29.52 8.07 160.97 72.16 20 E4a_E5a KnownJunction 0 6.74 11.84 61.12 69.79 32.00 51.16 46.81 57.34 88.16 69.60 30.06 67.37 62.82 41.97 13.35 11.54 34.50 64.63 0.00 24.80 13.78 153.70 74.78 21 ER5a ExonRegion 0 6.16 8.28 69.64 43.79 44.82 65.51 51.40 67.64 100.07 90.95 33.58 87.13 81.61 27.29 24.89 35.72 60.09 119.26 1.45 26.92 6.55 134.61 69.09 22 E5a_E6a KnownJunction 0 21.49 2.57 60.91 60.93 52.04 62.29 33.96 63.05 85.97 82.25 31.53 111.04 82.79 22.78 5.19 24.52 67.98 102.93 0.00 26.85 0.00 98.40 63.42 23 ER6a ExonRegion 0 14.44 8.56 58.99 42.64 51.74 55.72 46.82 59.12 82.32 68.23 28.92 75.22 78.59 26.81 15.55 16.00 72.88 105.54 0.45 22.87 4.44 91.48 60.57 24 E6a_E7a KnownJunction 1 14.67 17.69 45.47 29.73 36.08 69.68 62.09 58.57 77.86 69.63 31.90 117.19 60.22 21.07 28.31 16.49 82.94 108.86 4.61 22.24 5.62 74.15 32.78 25 ER7a ExonRegion 0 13.61 10.95 42.85 32.92 33.15 58.72 45.30 51.74 68.32 58.32 21.47 60.12 73.40 16.12 13.22 17.97 50.29 104.28 0.77 31.49 9.48 76.43 43.04 26 E7a_E8a KnownJunction 0 2.82 6.71 56.62 36.89 46.18 33.67 59.35 55.78 87.18 54.31 37.90 13.95 48.21 21.78 5.81 23.84 54.60 113.79 0.00 36.18 11.49 92.89 56.25 27 ER8a ExonRegion 0 10.48 11.07 30.39 37.49 51.78 62.00 51.27 48.58 77.50 56.02 23.87 54.39 56.25 17.73 9.26 16.44 37.93 90.77 1.01 38.80 11.12 110.12 48.13 28 E8a_E9a KnownJunction 0 9.78 21.25 28.24 46.28 49.41 115.10 63.68 51.34 68.60 51.15 19.69 51.02 48.21 14.54 4.45 25.89 34.69 74.99 0.00 40.14 9.39 95.71 58.56 29 ER9a ExonRegion 0 9.05 11.74 29.07 37.22 40.28 58.66 44.92 48.74 86.26 68.93 30.98 87.08 78.94 17.12 14.05 19.46 36.67 85.79 0.00 33.15 4.18 129.53 63.21 30 E9a_E10a KnownJunction 0 10.74 6.71 45.65 23.07 37.35 56.96 52.60 41.65 62.38 68.42 17.32 39.16 47.72 3.00 4.45 14.95 45.16 81.50 0.00 11.63 3.15 144.57 67.44 31 E10_Aa NovelBoundary 0 3.78 0.00 0.00 12.89 0.00 0.00 8.48 28.01 15.74 9.35 5.11 0.00 0.00 0.00 0.00 8.12 21.97 13.18 0.00 5.69 0.00 13.10 8.71 32 ER10a ExonRegion 0 23.68 3.00 39.20 26.48 56.05 68.52 37.79 52.74 80.13 86.30 21.58 127.25 87.40 15.03 17.33 13.54 41.44 82.92 0.00 36.29 8.13 133.91 62.30 33 E10a_E11a KnownJunction 0 13.04 0.00 45.50 23.04 98.56 103.29 55.29 40.70 98.06 88.51 17.06 161.45 117.52 19.60 25.96 7.35 30.29 74.45 0.00 26.78 4.76 128.04 71.02 34 ER11a ExonRegion 0 9.94 11.81 52.08 36.40 67.93 91.87 61.61 62.21 93.20 83.91 31.87 114.36 90.02 20.41 16.49 23.20 45.62 86.69 0.00 34.07 3.88 120.46 72.06 35 E11a_E12a KnownJunction 1 6.67 12.76 57.54 32.03 66.72 87.90 75.96 46.25 91.23 73.49 49.38 79.08 90.58 14.77 8.90 10.85 26.83 44.60 0.00 23.91 0.00 120.32 44.73 36 ER12a ExonRegion 0 15.76 13.50 52.44 43.52 56.36 71.13 55.40 57.93 91.36 73.32 32.98 95.37 105.85 22.95 13.04 12.48 50.53 57.53 0.00 30.65 5.60 109.04 57.73 37 E12a_E13a KnownJunction 1 13.85 15.85 58.45 47.11 46.86 56.67 37.01 74.14 104.25 84.43 44.75 61.37 56.98 24.49 19.53 12.30 89.20 55.13 0.00 49.54 7.72 139.67 64.28 38 ER13a ExonRegion 0 18.52 23.70 44.45 55.87 97.70 102.55 65.74 66.86 84.72 79.67 28.73 103.37 79.80 20.58 17.21 17.25 57.65 59.91 1.13 29.49 7.25 118.41 50.19 39 E13a_E14a KnownJunction 0 30.52 43.08 57.09 75.25 90.58 146.73 118.49 71.39 70.80 76.61 43.75 126.04 94.80 25.02 10.75 20.51 55.17 73.25 0.00 51.20 7.78 164.35 82.89 40 ER14a ExonRegion 0 19.23 23.67 60.92 66.95 86.18 88.53 64.80 78.10 86.64 76.87 30.63 83.65 59.08 21.04 21.93 19.22 55.08 104.88 2.52 36.71 9.91 120.12 74.65 41 E14a_E15a KnownJunction 0 43.34 28.74 71.20 84.47 103.65 95.29 79.05 87.36 98.70 82.82 31.96 69.02 52.59 26.61 45.00 15.21 44.13 107.65 12.71 29.27 5.87 122.22 75.55 42 ER15a ExonRegion 0 32.46 33.44 66.53 62.19 86.48 56.86 56.06 72.03 80.68 73.91 25.85 56.88 61.87 22.97 24.63 12.32 65.92 89.99 0.00 24.85 6.41 96.13 57.37 43 E15a_E16a KnownJunction 1 20.74 39.40 65.73 74.72 30.31 51.67 47.74 90.77 96.27 76.42 26.01 50.87 104.05 20.01 31.52 7.35 57.50 85.39 0.00 20.65 11.98 99.63 60.69 44 ER16a ExonRegion 0 30.92 32.95 98.62 122.35 96.47 105.34 84.06 98.08 110.91 101.70 35.95 71.84 120.54 19.93 32.07 13.12 57.91 58.51 0.00 35.90 7.01 139.96 57.40 45 E16a_E17a KnownJunction 0 48.60 41.90 109.25 146.63 98.05 151.39 129.97 116.73 97.51 130.31 42.06 126.64 143.82 19.60 33.13 18.88 39.64 78.43 0.00 41.74 5.81 134.77 50.71 46 ER17a ExonRegion 0 40.09 42.57 111.62 121.45 137.01 98.93 104.24 104.07 117.48 96.97 44.65 121.73 220.16 15.73 37.48 18.55 64.07 67.44 0.00 46.09 4.87 177.42 62.03 47 E17a_E18a KnownJunction 0 10.00 34.53 165.90 166.05 152.97 92.90 121.05 156.08 121.41 107.47 43.54 126.79 217.19 25.08 56.00 23.84 55.91 104.34 0.00 61.30 11.00 225.71 78.02 48 ER18a ExonRegion 0 28.16 31.97 167.59 152.57 145.07 104.58 97.95 147.04 148.27 112.38 45.24 174.00 237.33 28.08 42.84 22.46 71.64 102.33 0.00 59.46 5.22 180.03 77.75 49 E18a_E19a KnownJunction 1 48.53 33.48 215.40 162.92 175.04 138.84 149.58 196.17 183.36 131.89 54.33 187.26 177.75 21.13 41.66 7.86 71.06 112.30 0.00 81.05 11.61 174.70 83.14 50 ER19a ExonRegion 0 53.08 41.80 169.59 142.41 166.02 145.87 137.60 142.77 162.63 129.08 38.72 152.42 260.16 29.84 46.99 25.60 65.42 104.00 0.77 69.67 4.64 189.08 63.43 51 E19a_E20a KnownJunction 0 48.45 45.39 213.59 157.82 153.40 80.92 100.03 159.78 158.45 138.10 27.53 176.61 246.74 19.95 42.52 27.51 65.45 52.11 0.00 62.13 0.00 251.18 35.17 52 ER20a ExonRegion 1 39.95 23.40 180.83 121.63 162.79 129.52 104.90 139.62 149.97 124.91 28.56 128.33 262.12 23.02 44.24 27.92 60.68 49.52 4.01 55.56 4.68 168.02 38.76 53 E20a_E21a KnownJunction 0 67.35 35.39 175.10 87.87 170.29 172.63 136.37 138.95 130.73 127.62 30.17 123.49 199.82 19.25 28.68 18.29 41.14 39.55 0.00 34.20 2.90 176.72 30.82 54 ER21a ExonRegion 0 73.12 41.12 226.92 120.06 149.42 170.57 123.28 160.19 146.50 135.68 38.96 161.37 216.72 24.15 39.41 18.84 51.87 53.85 0.00 46.15 4.87 198.56 38.21 55 E21a_E22a KnownJunction 0 122.39 53.54 262.47 159.42 220.46 238.78 145.65 190.54 173.46 155.15 38.90 182.01 214.76 21.66 45.99 21.96 75.08 50.78 0.00 43.40 2.84 206.72 55.91 56 E22_Aa NovelBoundary 0 3.19 0.00 1.30 7.13 15.45 2.38 26.37 15.32 17.30 2.55 2.68 12.30 6.82 0.00 0.00 4.36 0.00 20.10 0.00 14.89 2.78 14.51 0.00 57 ER22a ExonRegion 0 61.80 37.94 211.83 142.04 178.56 189.68 151.33 172.38 156.01 139.13 39.71 154.80 258.21 23.98 34.36 16.15 62.39 47.49 0.00 33.12 2.86 204.97 32.37 58 E22_Da NovelBoundary 0 9.85 6.71 2.78 5.06 8.15 4.94 11.79 12.61 12.90 1.67 5.00 0.00 19.48 6.77 5.69 0.00 9.26 16.21 0.00 5.88 2.53 7.72 4.18 59 E22a_E23a KnownJunction 0 86.02 37.82 190.00 146.04 231.07 165.87 153.24 169.02 133.30 125.02 36.69 159.65 276.77 12.66 31.15 20.51 51.24 37.97 0.00 36.82 0.00 179.41 35.00 60 I22_AR1 ActiveIntronRegion 0 1.08 0.81 8.98 6.92 4.77 2.88 9.09 6.34 7.64 5.82 0.03 2.59 4.36 1.19 0.91 3.08 5.88 17.46 0.00 4.77 1.47 7.72 1.31 61 ER23a ExonRegion 0 52.93 24.30 211.14 145.42 206.66 166.96 153.79 193.37 159.95 153.73 44.38 165.99 313.82 23.64 62.45 18.24 64.48 61.82 0.00 33.86 3.92 196.07 53.57 62 E23a_E24a KnownJunction 0 62.68 21.51 297.54 211.79 255.35 219.65 225.85 200.61 202.17 184.03 70.39 186.81 350.63 42.85 35.60 22.73 53.20 69.77 0.00 52.28 5.13 240.83 30.56 63 ER24a ExonRegion 0 67.23 45.33 248.66 194.20 231.33 175.90 153.88 196.07 169.74 175.93 46.78 156.05 203.77 28.15 45.61 17.52 74.76 72.60 0.00 42.74 6.53 163.67 72.33 64 E24a_E25a KnownJunction 0 123.80 64.59 247.83 176.83 284.21 153.09 134.74 221.68 177.98 174.95 56.28 140.30 282.77 32.84 57.73 20.93 73.40 70.47 0.00 30.49 8.90 165.15 109.09 65 ER25a ExonRegion 1 96.99 46.17 234.36 180.46 239.35 170.99 139.51 206.55 149.57 150.96 44.49 122.29 283.33 27.64 52.11 21.59 76.21 58.55 0.00 62.52 5.27 159.59 58.04 66 E25a_E26a KnownJunction 0 106.91 75.05 301.38 217.26 209.51 123.68 174.35 237.33 141.61 186.40 41.22 100.53 240.41 31.31 32.39 41.36 66.48 92.81 0.00 36.24 0.00 128.84 88.01 67 ER26a ExonRegion 0 88.81 36.68 244.91 181.61 260.39 202.45 202.87 199.23 129.66 133.35 31.53 128.52 168.80 22.52 43.66 24.80 66.62 65.43 0.00 39.96 1.07 143.47 85.08 68 E26a_E27a KnownJunction 0 121.58 52.62 240.71 164.78 461.55 295.45 312.63 184.79 134.37 109.89 39.06 163.85 245.28 42.91 80.60 29.99 65.45 52.56 0.00 41.29 0.00 212.91 77.77 69 ER27a ExonRegion 0 91.76 53.53 223.72 140.35 235.24 141.46 172.71 148.35 104.57 116.13 30.49 110.28 141.41 30.09 42.58 33.49 57.93 64.31 0.00 39.53 2.06 146.14 67.07 70 E27a_E28a KnownJunction 0 77.05 68.34 200.55 145.14 202.80 71.66 110.67 167.50 100.78 115.08 38.33 99.18 126.62 22.72 46.36 30.68 55.07 57.99 0.00 46.28 5.75 131.41 57.11 71 ER28a ExonRegion 0 53.75 55.83 185.15 137.58 154.05 94.70 95.42 138.54 107.22 117.78 32.91 84.00 79.09 19.66 31.15 21.77 60.23 61.88 0.00 31.31 4.67 131.35 55.02 72 E28a_E29a KnownJunction 0 141.06 71.37 166.79 172.91 266.89 177.74 155.72 156.12 115.77 115.53 25.32 136.54 61.20 34.38 45.61 36.74 75.27 49.91 0.00 20.65 3.15 104.65 79.81 73 ER29a ExonRegion 0 99.05 42.99 208.11 217.07 225.49 135.22 137.56 188.79 123.79 111.77 11.31 64.94 59.61 9.64 22.88 7.56 15.10 43.75 0.48 26.90 1.96 141.00 32.70 74 IG40_SR1 SilentIntergenicRegion 0 6.23 3.91 11.80 28.35 24.65 11.12 12.22 18.53 18.65 13.40 0.77 1.89 0.89 0.36 0.00 0.00 0.00 12.39 0.85 4.39 0.00 4.43 7.75 75 IG40_AR2 ActiveIntergenicRegion 0 9.46 6.60 13.45 33.23 30.08 21.03 17.23 23.39 12.06 10.97 0.27 0.00 1.22 0.52 0.47 0.41 0.00 9.86 0.00 2.77 0.10 7.92 1.22 76 IG40_SR2 SilentIntergenicRegion 0 9.52 3.96 23.53 47.20 37.12 21.65 14.64 25.73 17.71 13.77 0.00 2.24 1.00 0.00 0.00 0.00 0.27 3.51 0.00 4.21 0.00 7.03 3.80 77 IG40_AR3 ActiveIntergenicRegion 0 7.33 1.59 13.95 30.43 24.52 9.33 9.41 17.35 9.61 6.47 0.00 0.71 0.77 0.00 0.00 0.00 0.22 2.47 0.00 3.58 0.00 2.89 0.87