Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 MARCH11 Gene 0 33.77 771.07 74.60 131.58 255.78 22.95 83.79 418.08 122.13 399.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 705.21 5.85 268.02 0.00 0.00 0.00 2 332432 Transcript 0 55.75 1114.03 104.03 190.70 381.62 34.97 135.10 567.99 157.50 579.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1037.56 6.56 389.74 0.00 0.00 0.00 3 IG39_AR3 ActiveIntergenicRegion 0 5.30 28.77 5.77 11.29 41.38 3.29 7.97 43.01 17.36 27.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.61 0.51 34.09 0.00 0.00 0.00 4 IG39_SR3 SilentIntergenicRegion 0 4.88 38.40 5.10 13.19 43.01 4.07 7.90 35.71 19.47 31.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31.58 1.01 25.33 0.00 0.00 0.00 5 IG39_AR2 ActiveIntergenicRegion 0 1.84 24.15 2.89 8.89 27.48 3.37 12.27 39.24 15.37 27.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21.52 0.15 31.28 0.00 0.00 0.00 6 IG39_SR2 SilentIntergenicRegion 0 2.87 77.81 2.62 8.02 22.05 1.87 12.44 42.86 10.43 17.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26.58 0.30 23.93 0.00 0.00 0.00 7 IG39_AR1 ActiveIntergenicRegion 0 2.79 138.44 3.03 3.53 22.16 0.85 8.87 69.71 11.48 33.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 180.48 0.64 65.86 0.00 0.00 0.00 8 IG39_SR1 SilentIntergenicRegion 0 2.13 51.22 0.90 0.47 7.23 0.62 2.95 45.75 6.48 22.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 144.47 0.00 26.69 0.00 0.00 0.00 9 ER1a ExonRegion 0 5.13 87.61 5.55 5.58 12.52 2.59 10.27 37.34 12.71 59.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 130.54 1.30 47.40 0.00 0.00 0.00 10 E1a_E2a KnownJunction 0 66.90 819.85 64.99 103.05 175.55 23.79 117.21 335.12 146.58 491.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1012.71 0.00 306.23 0.00 0.00 0.00 11 ER2a ExonRegion 0 41.98 968.43 97.33 177.66 302.96 31.80 119.44 560.25 175.73 618.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1109.60 14.11 436.26 0.00 0.00 0.00 12 E2a_E3a KnownJunction 0 68.01 1494.87 90.86 211.00 523.26 55.88 227.39 596.40 163.42 666.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1062.66 4.80 478.93 0.00 0.00 0.00 13 E2a_E4a NovelJunction 0 0.00 199.31 35.30 65.96 143.72 21.01 48.53 166.80 57.78 173.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 177.17 4.80 78.68 0.00 0.00 0.00 14 I2_SR3 SilentIntronRegion 0 4.59 108.61 3.75 20.33 41.15 1.39 24.85 41.87 16.43 27.75 0.00 0.04 0.00 0.00 0.00 0.00 0.00 42.78 0.51 27.40 0.00 0.00 0.00 15 I2_AR3 ActiveIntronRegion 0 29.23 332.24 18.27 61.73 116.70 1.73 48.51 142.58 40.43 73.34 0.00 0.00 0.52 0.00 0.00 0.00 0.00 123.12 0.18 55.12 0.00 0.00 0.00 16 I2_AR4 ActiveIntronRegion 0 15.17 439.93 11.03 43.39 76.26 0.00 28.24 110.91 28.61 67.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 87.46 5.31 55.67 0.00 0.00 0.00 17 I2_SR4 SilentIntronRegion 0 13.42 366.38 12.19 31.53 77.87 1.52 38.55 81.05 20.12 50.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 57.96 1.66 29.46 0.00 0.00 0.00 18 I2_AR5 ActiveIntronRegion 0 10.11 159.54 6.33 35.12 63.97 2.24 37.60 78.97 35.66 51.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 72.52 0.78 45.12 0.00 0.00 0.00 19 ER3a ExonRegion 0 53.83 1331.17 119.43 236.18 435.41 42.09 156.32 684.84 164.69 665.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1240.87 14.33 516.69 0.00 0.00 0.00 20 E3a_E4a KnownJunction 0 82.61 1454.08 183.14 313.38 638.54 41.91 148.34 849.95 164.61 756.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1384.71 4.42 461.99 0.00 0.00 0.00 21 I3 Intron 0 2.70 63.96 1.95 15.71 36.95 2.83 25.18 62.87 32.68 45.65 0.00 0.00 0.01 0.00 0.01 0.00 0.00 115.85 0.32 71.17 0.00 0.00 0.00 22 I3_SR2 SilentIntronRegion 0 0.56 28.05 1.26 7.61 13.45 1.20 20.96 41.27 22.79 27.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29.92 0.00 46.41 0.00 0.00 0.00 23 I3_AR3 ActiveIntronRegion 0 4.23 31.52 4.90 10.39 27.43 1.83 25.65 67.63 46.93 36.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22.40 0.00 60.37 0.00 0.00 0.00 24 I3_AR4 ActiveIntronRegion 0 4.23 36.27 4.90 12.27 36.12 1.83 27.14 77.78 52.90 41.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26.79 0.00 63.47 0.00 0.00 0.00 25 I3_AR5 ActiveIntronRegion 0 0.65 38.08 2.84 12.25 34.70 6.13 28.95 85.23 40.31 51.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34.28 0.00 67.58 0.00 0.00 0.00 26 I3_SR3 SilentIntronRegion 0 3.16 71.94 2.13 17.39 41.71 3.04 26.51 68.01 34.97 49.48 0.00 0.00 0.01 0.00 0.01 0.00 0.00 132.51 0.36 75.80 0.00 0.00 0.00 27 E4_Aa NovelBoundary 0 25.56 516.36 39.59 83.47 323.26 5.68 106.48 305.76 67.79 161.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 158.60 0.00 95.43 0.00 0.00 0.00 28 ER4a ExonRegion 0 71.81 1642.18 166.88 288.04 583.11 46.74 166.70 912.02 274.79 795.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1321.85 6.98 480.65 0.00 0.00 0.00 29 IG38_AR2 ActiveIntergenicRegion 0 23.95 571.20 22.42 66.99 169.23 17.07 41.34 174.67 74.08 160.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 69.99 0.84 88.69 0.00 0.00 0.00 30 IG38_SR2 SilentIntergenicRegion 0 11.29 222.82 12.25 42.97 76.03 2.94 13.41 52.45 36.59 69.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 78.33 1.67 41.67 0.00 0.00 0.00 31 IG38_AR1 ActiveIntergenicRegion 0 7.18 126.65 6.48 32.40 51.12 0.49 14.03 36.10 24.45 44.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.20 1.27 25.51 0.00 0.00 0.00