Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C5orf34 Gene 0 21.44 27.09 20.36 21.65 39.14 19.73 30.48 26.83 16.96 32.68 39.98 64.15 36.44 36.23 26.02 36.87 42.83 19.98 11.02 34.58 5.83 17.25 9.86 2 306862 Transcript 0 24.17 29.87 24.23 24.37 49.07 23.55 37.58 30.73 17.30 33.39 39.83 64.00 34.97 36.00 28.04 37.00 38.17 15.73 7.59 30.92 3.61 16.34 7.99 3 ER1a ExonRegion 0 8.88 14.27 11.34 6.13 8.22 10.04 12.94 10.78 10.77 15.72 37.69 5.48 6.17 29.34 13.93 34.66 43.07 27.21 13.73 25.27 9.58 11.02 15.37 4 E1a_E2a KnownJunction 0 0.00 2.89 3.93 6.66 8.15 5.22 22.04 10.06 7.00 12.22 13.79 11.70 6.82 12.01 0.00 16.41 4.30 6.30 4.14 27.68 0.00 9.19 0.00 5 E1a_E3a NovelJunction 0 0.00 18.35 1.69 1.43 11.54 2.90 7.15 0.00 2.46 2.77 13.90 0.00 0.00 5.18 0.00 19.40 8.42 14.67 0.00 7.67 2.78 0.00 0.00 6 I1_SR2 SilentIntronRegion 0 4.91 3.33 1.25 7.20 4.74 3.50 4.15 4.21 6.27 5.13 3.16 5.66 7.07 3.71 6.42 6.08 0.90 0.63 2.17 4.64 2.40 8.24 4.81 7 ER2a ExonRegion 0 12.04 17.10 10.25 9.07 14.10 3.18 16.78 13.30 10.88 18.11 26.08 32.89 25.64 21.21 14.87 22.70 35.50 11.69 8.54 36.56 7.14 13.64 6.94 8 E2a_E3a KnownJunction 0 17.19 38.55 8.90 5.46 12.22 2.84 13.69 17.54 9.78 22.64 37.38 82.08 27.11 31.79 22.25 54.94 41.05 20.02 9.04 30.62 7.78 25.72 19.72 9 ER3a ExonRegion 0 8.40 21.53 8.39 12.37 37.10 20.48 39.57 16.61 15.82 23.94 45.70 92.65 47.73 36.24 15.76 50.33 47.90 19.77 8.88 43.38 2.52 17.92 12.59 10 E3_Da NovelBoundary 1 9.93 0.00 4.73 2.06 7.64 0.00 2.25 0.00 4.54 6.47 0.00 0.00 27.11 4.77 0.00 0.00 7.67 0.00 0.00 2.81 2.47 14.45 0.00 11 E3a_E4a KnownJunction 0 6.89 9.87 9.70 13.88 21.05 16.75 37.98 16.31 17.82 28.04 53.96 107.28 52.92 42.26 9.27 75.54 51.24 37.47 13.08 37.26 2.90 18.06 21.17 12 E4_Aa NovelBoundary 0 3.56 0.00 7.86 0.00 0.00 0.00 21.37 2.42 1.53 1.37 0.00 0.00 0.00 2.47 0.00 0.00 0.00 2.32 4.05 9.27 0.00 0.00 4.35 13 ER4a ExonRegion 0 18.98 29.42 14.21 17.27 39.26 20.64 34.77 16.84 18.11 34.11 53.02 97.12 46.97 47.76 25.27 47.58 62.50 33.18 17.70 46.20 9.95 20.17 13.27 14 E4_Da NovelBoundary 0 0.00 0.00 3.08 5.06 0.00 5.17 16.74 2.55 6.68 9.40 2.00 12.15 13.64 14.01 0.00 11.96 31.23 17.91 13.46 12.02 0.00 5.69 0.00 15 E4a_E5a KnownJunction 0 10.37 6.71 6.15 1.43 30.39 5.22 43.99 11.54 9.95 20.82 39.90 16.81 25.97 29.31 37.46 12.22 30.01 24.37 4.42 27.10 0.00 7.78 7.26 16 I4_AR1 ActiveIntronRegion 0 5.54 2.13 0.96 5.31 2.80 5.28 10.39 1.99 5.78 3.12 6.57 18.72 5.27 8.65 3.17 6.97 6.91 4.33 2.50 12.18 0.00 2.72 1.42 17 E5_Aa NovelBoundary 1 3.78 5.99 9.40 6.96 20.71 0.00 1.81 11.25 6.45 4.51 4.95 27.61 27.43 7.71 0.00 8.20 4.30 0.00 0.00 18.41 0.00 3.12 0.00 18 ER5a ExonRegion 1 17.79 30.76 16.52 17.96 31.66 12.76 36.52 23.62 9.21 20.87 28.01 64.36 38.35 38.93 10.61 34.37 38.37 16.05 10.09 22.85 2.04 16.58 1.35 19 E5_Da NovelBoundary 0 6.52 0.00 3.37 5.39 8.49 0.00 6.05 6.94 11.31 7.87 15.90 25.21 14.12 26.02 4.45 11.28 3.93 14.47 13.46 21.35 0.00 5.94 0.00 20 E5a_E6a KnownJunction 0 6.52 17.76 18.98 25.50 59.85 15.56 32.68 19.84 14.18 16.73 16.90 70.67 20.45 36.44 15.20 15.98 27.86 6.43 4.61 9.14 2.41 10.04 3.93 21 E5a_E7a NovelJunction 0 7.11 3.09 2.78 4.69 3.82 0.00 0.00 0.00 0.00 6.07 12.69 12.60 0.00 2.47 4.45 7.95 7.76 0.00 0.00 3.26 0.00 0.00 0.00 22 I5 Intron 0 1.88 3.83 2.96 3.93 2.52 3.07 8.38 2.56 3.56 5.99 9.91 19.08 13.28 13.08 2.10 9.64 13.64 7.46 1.50 19.70 1.96 5.01 1.84 23 I5_SR1 SilentIntronRegion 0 1.89 3.84 2.97 3.94 2.52 3.08 8.40 2.57 3.57 6.00 9.93 19.11 13.30 13.10 2.10 9.66 13.67 7.47 1.50 19.74 1.96 5.02 1.85 24 E6_Aa NovelBoundary 0 3.48 6.45 2.28 8.46 0.00 0.00 18.86 0.00 0.00 9.51 12.32 18.61 20.45 13.89 0.00 16.24 3.83 2.11 0.00 17.32 0.00 7.90 6.91 25 ER6a ExonRegion 1 14.32 14.40 18.46 20.83 43.14 25.05 33.29 23.49 15.49 27.29 21.07 68.43 46.79 37.60 17.62 33.82 22.65 6.87 11.10 21.28 1.60 16.06 9.31 26 E6_Da NovelBoundary 0 0.00 6.45 1.12 2.03 11.54 0.00 12.23 3.66 1.77 7.20 9.58 31.96 27.27 14.42 4.45 19.40 3.65 1.95 4.14 27.23 0.00 17.39 3.84 27 E6a_E7a KnownJunction 0 21.11 23.88 29.45 29.60 29.63 27.48 33.25 25.92 20.28 15.61 19.22 54.47 40.91 28.84 9.15 30.25 31.32 7.67 4.14 11.38 5.44 5.69 8.37 28 I6 Intron 0 2.46 7.18 3.51 4.08 4.52 3.45 7.44 3.81 2.65 6.22 6.45 17.74 16.16 9.44 3.70 6.85 6.35 4.22 1.35 14.21 1.63 4.01 2.17 29 I6_AR1 ActiveIntronRegion 0 1.52 5.84 5.31 5.21 2.35 6.21 7.82 2.22 3.99 4.73 7.14 24.87 26.65 14.91 3.33 7.28 6.16 4.67 1.65 22.19 0.63 13.32 1.68 30 I6_SR1 SilentIntronRegion 0 2.63 7.42 3.21 3.89 4.90 2.98 7.39 4.09 2.42 6.48 6.34 16.53 14.37 8.51 3.76 6.78 6.39 4.15 1.30 12.85 1.80 2.40 2.26 31 I6 Intron 0 18.45 31.45 7.34 9.47 16.33 8.95 7.97 4.58 1.58 3.51 14.53 9.84 12.92 8.56 8.45 10.40 12.77 4.60 7.33 4.70 6.46 4.16 6.13 32 I6_SR1 SilentIntronRegion 0 6.36 13.56 1.01 1.24 13.34 6.36 3.36 0.53 0.51 0.47 9.76 6.63 9.09 7.53 4.49 8.82 7.73 2.56 3.46 3.96 5.13 2.69 5.84 33 I6_AR1 ActiveIntronRegion 0 16.02 24.30 6.15 6.09 17.76 7.37 4.59 5.01 2.15 2.88 19.77 13.47 15.65 12.28 14.54 19.57 13.23 7.83 16.25 6.63 11.39 4.84 11.69 34 I6_SR2 SilentIntronRegion 1 45.95 78.78 20.02 29.92 22.38 15.50 17.63 10.10 3.14 7.54 21.22 9.03 13.51 6.82 11.95 6.04 24.14 6.10 7.46 3.50 6.02 4.65 2.48 35 I6_AR2 ActiveIntronRegion 0 12.08 13.38 8.72 5.13 11.33 8.83 15.03 9.52 1.29 10.30 6.27 19.23 24.42 8.57 2.41 5.18 6.19 2.04 2.39 6.66 0.83 8.84 2.20 36 E7_Aa NovelBoundary 0 24.00 2.89 10.85 9.06 12.56 9.31 5.74 5.79 11.57 5.99 6.53 32.11 6.82 18.54 4.45 8.29 0.00 0.00 0.00 5.75 0.00 12.06 0.00 37 ER7a ExonRegion 0 29.03 39.96 25.27 28.68 40.05 23.94 32.98 29.83 10.90 32.14 23.34 64.66 41.75 34.00 28.44 33.31 42.84 10.20 9.97 29.74 1.82 11.62 5.17 38 E7_Da NovelBoundary 0 9.63 0.00 3.64 1.73 0.00 0.00 3.80 2.38 1.79 0.00 7.63 13.20 26.46 0.00 0.00 0.00 3.46 0.00 0.00 0.00 0.00 0.00 0.00 39 E7a_E8a KnownJunction 0 20.74 34.47 26.49 18.71 44.57 7.27 49.24 32.24 16.15 35.59 43.85 87.93 31.82 37.32 60.08 20.68 64.42 7.79 11.77 23.20 0.00 10.47 3.59 40 I7_AR1 ActiveIntronRegion 0 1.71 2.72 0.72 2.13 1.73 1.19 5.68 1.67 0.60 1.47 2.35 2.31 17.09 0.45 2.46 0.96 0.53 0.00 0.52 2.75 1.07 1.69 0.00 41 ER8a ExonRegion 0 28.94 55.34 33.70 32.14 57.87 50.40 52.09 39.04 19.07 41.86 61.00 128.71 35.51 44.62 31.71 35.20 60.78 13.49 5.60 42.28 6.96 15.63 4.03 42 E8a_E9a KnownJunction 0 31.86 70.05 43.43 46.75 68.93 59.23 76.75 39.84 20.40 53.62 52.28 100.08 33.44 55.39 46.11 51.87 58.44 11.86 8.56 49.02 7.54 20.51 12.63 43 ER9a ExonRegion 0 32.78 28.37 35.06 38.89 63.29 34.72 43.61 53.56 24.96 45.35 66.62 98.62 53.65 51.12 44.60 53.98 43.10 28.49 7.95 44.28 3.42 22.54 13.45 44 E9a_E10a KnownJunction 0 33.64 24.01 34.00 43.38 101.19 30.72 45.93 55.08 33.91 51.23 65.54 88.23 39.93 53.33 53.40 56.22 29.17 15.38 8.19 47.04 2.84 21.68 7.34 45 E10_Aa NovelBoundary 1 0.00 0.00 0.00 5.36 12.65 0.00 0.00 1.64 0.00 1.45 0.00 12.00 21.26 2.47 0.00 0.00 0.00 0.00 0.00 8.37 0.00 0.00 0.00 46 ER10a ExonRegion 0 39.68 42.56 35.76 39.64 56.36 40.94 48.78 48.76 25.31 51.73 64.66 68.31 39.15 47.03 47.21 50.56 47.46 20.75 3.19 36.01 2.92 17.70 6.89 47 E10a_E11a KnownJunction 0 62.60 52.75 57.18 45.25 71.31 40.03 44.38 64.77 26.62 56.71 55.44 43.51 64.77 30.55 45.12 39.05 20.01 27.11 0.00 46.47 0.00 12.00 7.77 48 ER11a ExonRegion 0 54.58 50.70 38.26 39.26 81.06 32.19 42.54 50.40 22.82 51.75 44.87 49.85 47.18 48.44 32.76 49.45 69.09 21.59 16.25 43.67 2.96 22.96 15.40 49 E11_Da NovelBoundary 0 0.00 18.15 1.36 1.30 11.63 2.27 16.83 0.00 8.19 4.65 7.26 36.61 13.80 22.43 14.96 11.88 12.72 1.58 0.00 2.49 0.00 6.25 0.00 50 E11a_E12a KnownJunction 0 43.12 53.15 33.09 18.38 88.29 36.68 35.46 23.74 14.90 48.43 40.33 32.11 26.78 33.49 35.85 31.36 38.90 3.65 4.24 17.96 3.03 22.11 0.00 51 I11 Intron 0 4.70 9.02 2.71 5.99 10.80 2.52 10.31 7.83 3.59 6.44 7.72 21.12 13.32 8.38 4.94 9.16 8.64 3.72 1.77 10.38 1.37 4.44 1.63 52 I11_AR1 ActiveIntronRegion 0 2.66 5.83 1.62 4.22 8.35 1.05 9.99 2.48 3.01 3.17 3.24 15.55 5.55 9.46 3.07 6.33 1.59 1.34 1.19 7.41 0.82 5.80 0.01 53 I11_SR1 SilentIntronRegion 0 5.31 10.26 2.18 5.94 10.24 1.70 10.33 7.35 3.57 6.49 9.91 23.05 14.98 8.01 4.04 10.52 11.10 4.74 1.66 10.70 1.67 4.30 1.64 54 I11_AR2 ActiveIntronRegion 0 4.58 8.27 4.15 7.01 13.09 4.49 10.68 10.81 3.96 7.87 5.86 20.34 13.72 8.94 7.30 8.22 7.31 2.87 2.26 11.31 1.09 4.26 2.29 55 E12_Aa NovelBoundary 0 21.04 3.35 9.43 9.69 11.88 2.44 8.57 12.65 5.96 8.65 6.95 23.11 6.17 7.06 0.00 4.36 0.00 1.74 8.38 20.39 0.00 3.06 0.00 56 ER12a ExonRegion 0 25.40 27.08 27.85 29.35 84.19 32.87 36.23 35.67 18.71 43.44 37.67 41.50 22.99 25.47 26.11 31.46 26.65 6.53 0.31 15.93 3.33 21.14 0.29 57 E12_Da NovelBoundary 0 6.67 9.41 8.81 0.00 3.48 8.01 8.88 13.60 0.00 10.31 9.53 18.46 25.32 9.12 4.45 8.29 3.65 0.00 4.24 3.20 0.00 8.33 0.00 58 E12a_E13a KnownJunction 0 32.75 14.73 30.22 30.73 87.27 20.61 49.64 47.48 19.01 24.69 28.69 42.61 16.56 27.96 22.25 26.32 4.77 5.97 0.00 15.98 2.47 20.70 0.00 59 I12 Intron 0 8.23 4.96 10.59 5.22 13.05 6.40 10.56 9.33 2.55 13.06 9.30 19.05 21.90 10.77 10.90 9.40 4.13 1.64 3.57 12.90 0.87 4.81 1.16 60 I12_SR1 SilentIntronRegion 0 8.49 5.07 10.84 5.41 13.19 6.56 10.83 9.65 2.61 13.50 9.49 19.76 22.43 11.15 11.19 9.65 4.29 1.70 3.67 13.11 0.90 4.99 1.20 61 E13_Aa NovelBoundary 0 6.45 6.71 18.75 13.75 24.45 2.61 14.00 10.47 1.50 6.53 7.21 6.30 13.15 7.36 32.88 0.00 4.77 0.00 9.04 3.07 0.00 2.88 0.00 62 ER13a ExonRegion 0 26.57 26.37 29.15 31.88 47.55 13.88 24.29 41.92 20.33 42.14 18.85 50.05 34.88 19.66 36.08 16.68 12.88 3.29 4.35 22.76 1.69 17.67 3.98 63 IG21_AR1 ActiveIntergenicRegion 0 4.51 3.22 3.11 3.17 5.29 1.63 1.83 3.42 4.57 4.96 9.36 4.31 3.44 8.66 4.78 12.63 6.29 4.88 1.57 4.63 6.75 4.11 5.22