Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PLEKHG4B Gene 0 9.90 24.51 48.01 28.90 18.00 0.68 17.57 0.59 3.20 0.45 0.23 0.84 0.45 0.42 0.83 0.99 0.74 45.72 10.61 29.14 1.01 5.63 5.16 2 398036 Transcript 0 2.08 6.60 10.64 9.16 0.54 0.00 6.97 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.96 5.19 13.35 0.00 6.21 4.81 3 283426 Transcript 0 5.24 13.86 50.51 23.63 7.83 0.18 12.33 0.09 3.41 0.04 0.02 0.08 0.04 0.03 0.07 0.08 0.06 61.65 9.47 34.25 0.61 4.82 4.06 4 IG1_AR1 ActiveIntergenicRegion 0 10.92 14.93 24.27 4.75 2.17 0.74 24.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 82.71 17.29 33.33 0.89 6.30 9.44 5 IG1_AR2 ActiveIntergenicRegion 0 3.16 2.61 34.53 10.86 2.06 0.00 4.37 0.00 1.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37.73 12.17 42.31 1.13 3.46 7.51 6 IG1_SR3 SilentIntergenicRegion 0 2.83 8.86 10.34 9.00 3.31 0.03 18.29 0.14 0.31 0.00 0.00 0.06 0.00 0.00 0.00 0.00 0.00 9.54 3.51 12.96 0.00 0.45 1.54 7 IG1_AR3 ActiveIntergenicRegion 0 3.86 10.71 40.85 17.84 2.72 0.25 17.06 1.01 2.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 88.79 14.32 55.40 0.29 7.52 5.51 8 IG1_SR4 SilentIntergenicRegion 0 2.75 8.36 24.59 10.56 2.22 0.24 15.60 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 53.10 10.92 32.85 3.43 5.68 1.89 9 ER1a ExonRegion 0 1.04 8.24 22.75 8.18 3.85 0.20 15.05 0.00 1.24 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 63.61 13.96 30.20 1.71 7.18 8.55 10 E1_Da NovelBoundary 0 6.00 2.89 17.47 7.29 0.00 0.00 7.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.51 0.00 8.95 0.00 0.00 3.67 11 E1a_E2a KnownJunction 0 7.11 12.50 33.29 8.79 0.00 0.00 20.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 79.01 12.71 29.02 0.00 5.08 11.87 12 I1 Intron 0 5.95 8.86 12.02 10.92 4.27 0.00 18.60 0.00 0.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25.98 6.94 18.34 0.21 2.32 5.40 13 I1_AR1 ActiveIntronRegion 0 8.83 9.32 12.46 9.54 0.00 0.00 29.13 0.00 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35.87 12.59 7.16 0.00 2.08 5.59 14 I1_AR2 ActiveIntronRegion 0 9.56 10.91 21.32 17.77 7.16 0.00 24.46 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 46.15 12.63 29.28 0.33 3.92 10.04 15 I1_SR2 SilentIntronRegion 0 4.38 7.02 11.49 10.85 4.92 0.00 16.23 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23.06 3.52 19.79 0.37 2.57 5.11 16 E2_Aa NovelBoundary 0 13.11 15.19 35.48 12.22 8.23 0.00 15.85 0.00 2.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28.23 0.00 34.83 0.00 0.00 0.00 17 ER2a ExonRegion 0 5.68 15.62 42.79 20.66 7.58 0.00 25.80 0.00 2.93 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.00 90.95 16.14 46.44 0.54 5.69 5.47 18 E2a_E3a KnownJunction 0 13.04 21.18 54.88 20.64 32.51 0.00 47.03 0.00 1.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 111.47 17.60 68.97 0.00 5.69 8.37 19 ER3a ExonRegion 0 10.89 32.01 50.75 18.99 9.28 0.00 29.50 0.00 1.81 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.00 101.79 18.52 63.11 0.00 8.80 7.82 20 E3a_E4a KnownJunction 0 17.48 74.86 43.08 19.61 11.21 0.00 50.04 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 87.01 14.31 69.67 0.00 8.51 4.10 21 E4_Aa NovelBoundary 0 2.82 14.73 23.18 13.19 3.23 0.00 19.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37.23 10.16 16.81 0.00 2.33 6.66 22 ER4a ExonRegion 0 9.68 39.81 45.90 23.20 14.69 0.00 49.34 0.00 3.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 76.68 17.52 67.02 0.00 8.09 5.69 23 E4_Da NovelBoundary 0 3.56 0.00 21.50 4.56 0.00 0.00 4.42 0.00 2.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22.01 0.00 6.01 0.00 0.00 4.01 24 E4a_E5a KnownJunction 0 3.78 20.13 40.89 31.06 30.39 0.00 28.84 0.00 4.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 73.00 25.41 70.82 0.00 8.63 0.00 25 I4 Intron 0 4.24 7.76 11.30 9.27 7.71 0.00 11.20 0.07 0.79 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.00 15.01 2.64 15.27 0.06 1.78 1.25 26 I4_SR1 SilentIntronRegion 0 4.33 7.64 11.48 9.39 7.88 0.00 11.11 0.07 0.81 0.00 0.00 0.22 0.00 0.00 0.00 0.00 0.00 15.25 2.64 15.42 0.06 1.80 1.29 27 E5_Aa NovelBoundary 0 0.00 18.81 24.57 35.36 12.82 0.00 31.00 0.00 2.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.02 0.00 24.48 0.00 2.39 0.00 28 ER5a ExonRegion 0 7.69 29.59 56.16 43.25 28.97 0.00 39.99 0.00 6.23 0.00 0.00 2.09 0.00 0.00 0.00 0.00 0.00 150.05 49.28 82.51 0.61 21.24 5.70 29 E5_Da NovelBoundary 0 9.93 39.86 38.97 29.87 3.82 0.00 25.57 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.16 0.00 19.81 0.00 11.21 0.00 30 E5a_E6a KnownJunction 0 5.56 22.69 87.08 35.19 25.30 0.00 48.84 0.00 11.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 144.96 51.48 51.07 3.09 34.41 16.39 31 I5 Intron 0 6.16 15.50 11.13 15.48 6.87 0.00 19.54 0.00 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.96 2.87 13.12 0.31 2.31 1.83 32 I5_AR1 ActiveIntronRegion 0 6.19 18.70 14.12 25.48 8.41 0.00 27.67 0.00 0.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.15 3.99 18.23 0.92 5.23 0.61 33 E6_Aa NovelBoundary 0 13.93 24.86 40.12 46.15 8.06 0.00 25.35 0.00 2.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 47.01 4.24 32.21 0.00 5.69 4.35 34 ER6a ExonRegion 0 4.36 26.38 79.31 36.43 15.78 0.00 35.78 0.00 7.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 102.84 26.30 87.56 4.71 15.17 9.66 35 E6a_E7a KnownJunction 0 6.96 29.40 76.31 31.93 19.10 0.00 72.03 0.00 4.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 118.18 33.04 53.63 3.09 10.47 8.62 36 E7_Aa NovelBoundary 0 0.00 12.10 10.47 16.05 15.03 0.00 24.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.17 0.00 6.39 0.00 0.00 3.59 37 ER7a ExonRegion 0 24.59 88.55 118.13 68.27 49.27 0.00 67.04 0.82 8.67 0.00 0.00 1.84 0.00 0.00 0.00 0.00 0.00 210.44 56.02 114.64 5.88 29.59 24.41 38 E7_Da NovelBoundary 0 7.26 5.99 30.51 18.81 7.64 0.00 8.13 2.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26.07 23.72 23.59 0.00 5.51 8.19 39 E7a_E8a KnownJunction 0 30.60 72.75 98.55 47.95 24.87 0.00 36.17 2.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 96.50 12.42 60.02 3.15 11.39 8.71 40 I7 Intron 0 3.10 6.45 9.65 9.42 2.61 0.00 14.22 0.21 0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.45 3.37 10.38 0.00 3.39 3.82 41 I7_SR1 SilentIntronRegion 0 3.11 6.48 9.70 9.46 2.62 0.00 14.28 0.21 0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.53 3.38 10.43 0.00 3.41 3.84 42 E8_Aa NovelBoundary 0 0.00 5.39 9.31 14.65 3.14 0.00 1.72 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.36 0.00 9.01 0.00 0.00 0.00 43 ER8a ExonRegion 0 12.03 29.49 67.61 38.85 19.00 0.00 27.62 0.36 2.25 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 104.28 15.27 56.73 3.57 6.98 14.20 44 E8a_E9a KnownJunction 0 3.70 17.83 59.40 43.85 10.27 0.00 12.06 0.00 3.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 63.88 9.13 62.38 0.00 10.96 11.01 45 ER9a ExonRegion 0 4.39 14.06 52.81 30.27 7.01 0.00 12.26 0.95 2.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 51.71 12.99 43.43 1.62 7.12 9.08 46 E9_Da KnownBoundary 0 2.74 17.37 29.80 20.88 4.33 0.00 6.09 0.00 4.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.42 8.19 17.77 0.00 10.29 7.94 47 E9a_E10a KnownJunction 0 5.85 6.71 34.50 16.65 7.47 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 74.53 8.66 45.06 0.00 0.00 0.00 48 ER9b ExonRegion 0 2.08 6.60 10.64 9.16 0.54 0.00 6.97 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.96 5.19 13.35 0.00 6.21 4.81 49 E9_Db NovelBoundary 0 11.11 15.52 21.23 12.59 0.00 0.00 12.90 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.38 0.00 12.02 0.00 2.94 0.00 50 ER10a ExonRegion 0 1.76 5.64 21.33 9.73 6.64 0.58 7.76 0.00 2.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 52.43 14.67 30.06 0.00 2.44 3.50 51 E10_Da NovelBoundary 0 0.00 3.09 0.00 3.46 4.33 0.00 1.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.21 3.86 20.20 0.00 0.00 4.27 52 E10a_E11a KnownJunction 0 6.22 2.96 13.25 5.03 3.31 0.00 1.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 52.94 13.46 36.05 0.00 2.76 3.33 53 ER11a ExonRegion 0 1.98 5.94 18.93 8.29 3.00 0.11 8.65 0.00 1.68 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 50.33 12.58 26.02 0.41 1.70 4.02 54 E11_Da NovelBoundary 0 0.00 15.46 25.66 9.72 0.00 0.00 6.40 0.00 3.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 44.94 15.34 29.15 2.53 0.00 3.16 55 E11a_E12a KnownJunction 0 0.00 0.00 16.97 5.76 0.00 0.00 0.00 0.00 1.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.40 4.24 5.82 0.00 6.25 0.00 56 I11 Intron 0 3.92 14.37 32.33 16.17 8.86 0.10 15.32 0.27 2.01 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 35.99 9.48 27.55 0.23 3.41 3.98 57 I11_SR1 SilentIntronRegion 0 3.84 14.72 33.16 16.48 9.16 0.10 15.50 0.29 2.07 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 37.33 9.65 28.25 0.25 3.58 3.90 58 I11_AR1 ActiveIntronRegion 0 5.20 8.75 19.07 11.23 4.09 0.00 12.61 0.00 1.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.39 6.85 16.34 0.00 0.64 5.43 59 E12_Aa NovelBoundary 0 3.78 21.38 37.61 27.27 11.88 0.00 6.71 0.00 4.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.13 16.47 27.16 2.47 3.12 3.16 60 ER12a ExonRegion 0 5.20 14.04 72.32 29.97 11.72 0.00 17.67 0.00 4.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 58.84 14.72 40.46 0.44 5.27 3.91 61 E12a_E13a KnownJunction 0 3.04 30.98 75.07 39.82 10.70 0.00 14.13 0.00 3.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38.68 14.40 35.54 0.00 6.25 4.35 62 ER13a ExonRegion 0 7.08 19.66 63.34 18.16 9.28 0.00 14.45 0.00 3.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 48.29 15.40 28.96 0.00 3.36 7.05 63 E13_Da NovelBoundary 0 6.37 8.62 13.33 1.33 0.00 0.00 2.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26.20 8.47 0.00 0.00 0.00 0.00 64 E13a_E14a KnownJunction 0 0.00 11.58 64.31 18.35 0.00 0.00 14.79 0.00 7.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42.37 3.95 26.78 0.00 2.94 3.33 65 ER14a ExonRegion 0 3.09 6.61 42.47 23.54 5.86 0.00 8.34 0.00 3.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 55.63 3.71 31.07 0.00 3.06 2.83 66 E14a_E15a KnownJunction 0 6.89 9.74 48.90 27.07 15.62 0.00 18.20 0.00 3.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43.90 0.00 40.01 0.00 5.94 3.41 67 ER15a ExonRegion 0 4.15 11.69 55.44 32.42 6.38 1.64 14.81 0.77 4.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 69.87 7.38 38.97 0.66 8.10 6.82 68 E15a_E16a KnownJunction 0 10.67 26.64 52.66 17.01 3.57 0.00 8.92 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 67.40 9.04 40.97 0.00 0.00 0.00 69 ER16a ExonRegion 0 2.82 16.16 66.86 26.99 12.55 0.00 17.11 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 77.94 7.27 34.97 2.05 5.20 5.35 70 E16a_E17a KnownJunction 0 0.00 12.70 61.50 14.52 4.16 0.00 20.45 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 73.75 4.80 29.91 2.84 5.69 4.10 71 I16_AR1 ActiveIntronRegion 0 1.09 13.20 6.56 9.35 6.20 0.00 4.91 0.00 2.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.82 2.82 25.82 0.00 3.06 0.00 72 I16_SR2 SilentIntronRegion 0 1.90 3.83 6.89 5.84 5.53 0.33 6.78 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.27 2.00 11.84 0.40 2.43 1.58 73 E17_Aa NovelBoundary 0 7.56 3.22 18.48 15.55 0.00 0.00 5.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.43 0.00 8.44 0.00 2.51 0.00 74 ER17a ExonRegion 0 6.35 17.94 75.60 48.66 10.41 0.00 15.19 0.00 6.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 109.05 10.44 44.88 1.18 11.99 9.32 75 E17a_E18a KnownJunction 0 16.89 21.90 75.87 51.18 8.15 0.00 15.41 0.00 10.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 148.61 17.13 57.08 2.35 10.53 7.34 76 ER18a ExonRegion 0 12.32 28.65 49.86 32.17 22.16 0.92 17.41 0.81 3.30 0.65 0.33 1.13 0.65 0.60 1.22 1.45 1.08 33.71 8.68 23.84 0.97 5.21 4.48