Order	SeqName	SeqType	IsAE	NBL01_MYCN	NBL05_MYCN	NBL09_MYCN	NBL10_MYCN	NBL02	NBL03	NBL04	NBL06	NBL07	NBL08	NBL11_Rel2	NBL11_Rem1	NBL11_Rel1	NBL12_Rel_Left	NBL12_Rel_Right	NBL13_Rel_Left	NBL13_Rel_Right	NBL14_MYCN_Met	NBL14_MYCN_Pri	NBL15_MYCN_Rel1	SKP01	SKP02	SKP03
1	RAD1	Gene	0	24.62	39.36	28.11	28.77	41.09	32.41	40.75	32.93	23.80	47.77	44.27	49.91	32.10	41.15	39.29	33.26	38.86	22.34	23.79	40.95	12.36	35.76	22.28
2	341754	Transcript	0	1.60	1.83	0.27	0.62	2.38	0.00	1.00	1.55	4.90	1.06	3.65	4.91	2.14	7.68	4.11	5.74	3.49	2.98	1.43	0.32	1.62	1.87	7.79
3	382038	Transcript	0	12.20	20.57	10.58	13.45	18.58	14.07	18.48	14.14	11.36	19.81	11.71	15.54	11.09	12.78	13.34	11.12	13.30	6.92	10.03	14.07	4.30	12.48	8.18
4	325577	Transcript	0	21.71	61.30	27.38	31.53	20.80	18.06	25.04	49.04	47.11	64.31	55.01	26.56	6.33	51.86	26.70	27.43	66.01	45.35	47.06	89.23	8.15	29.82	33.97
5	ER1a	ExonRegion	0	0.14	0.00	0.00	0.06	0.00	0.00	0.06	1.24	2.04	0.12	1.76	1.13	8.56	4.84	1.51	2.78	0.36	2.57	0.00	0.00	0.00	0.09	3.77
6	E1_Da	NovelBoundary	0	31.12	29.27	7.51	6.99	12.31	0.00	2.08	8.54	4.66	7.79	2.21	0.00	8.28	0.00	13.35	16.24	0.00	4.52	18.17	0.00	0.00	5.63	3.50
7	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.55	7.41	1.10	2.42	6.30	0.00	16.95	5.19	7.86	0.00	4.68	0.00	0.00	0.00	0.00	11.87
8	E2_Aa	NovelBoundary	0	102.09	90.51	128.74	142.01	103.90	122.43	205.05	168.03	123.99	148.17	17.21	26.41	20.29	20.84	43.88	99.97	51.43	144.80	62.78	147.58	32.06	40.48	57.79
9	ER2a	ExonRegion	0	6.27	7.32	1.10	2.41	9.54	0.00	3.94	2.42	8.40	3.01	7.71	12.22	0.00	6.46	9.73	8.64	5.01	4.67	5.73	1.28	3.32	7.40	15.51
10	E2_Da	NovelBoundary	1	30.75	18.48	19.84	12.89	18.93	13.17	8.17	14.58	4.46	7.12	9.48	0.00	6.82	2.47	28.31	15.30	0.00	2.45	4.52	2.56	0.00	8.88	15.45
11	E2a_E3b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.77	0.00	2.68	0.00	0.00	2.47	0.00	3.67	8.60	0.00	0.00	0.00	3.15	0.00	0.00
12	E3_Aa	NovelBoundary	0	20.08	8.55	6.12	10.69	39.39	0.00	0.00	9.08	9.20	18.96	15.58	12.60	13.64	6.83	13.85	19.48	14.31	0.00	13.65	18.47	9.20	11.70	19.72
13	ER3a	ExonRegion	0	8.51	5.00	3.42	6.95	6.34	3.65	5.94	6.27	9.10	9.81	9.60	7.86	9.75	9.77	13.05	10.84	15.38	5.08	6.98	6.28	4.83	9.03	7.72
14	E3_Ab	KnownBoundary	0	0.00	0.00	0.00	1.80	0.00	11.36	2.25	2.46	2.72	1.56	7.26	0.00	0.00	10.07	0.00	4.36	3.83	7.17	0.00	0.00	0.00	0.00	7.60
15	ER3b	ExonRegion	0	2.66	3.49	0.09	0.58	3.57	4.35	2.99	2.55	3.34	3.68	9.34	0.00	6.61	13.06	14.95	10.67	11.26	3.29	0.00	0.00	9.58	8.15	9.83
16	E3_Ac	KnownBoundary	0	2.74	15.59	2.72	2.03	0.00	5.79	0.00	0.00	5.73	2.50	19.74	0.00	6.82	21.43	31.89	11.19	14.03	7.67	0.00	0.00	8.77	0.00	15.45
17	ER3c	ExonRegion	1	24.87	31.44	18.56	7.84	34.52	58.95	54.28	15.03	15.25	19.65	59.61	6.59	2.81	60.93	57.81	69.19	66.34	44.54	21.40	26.42	31.82	28.17	41.25
18	E3a_E4a	KnownJunction	0	10.08	14.67	5.23	4.73	14.35	10.85	8.30	19.43	19.39	28.63	32.69	13.95	6.82	35.26	26.82	35.38	28.24	35.48	8.38	14.64	33.48	24.06	15.45
19	ER4a	ExonRegion	1	26.84	62.43	54.03	48.06	62.02	66.85	64.71	54.59	54.63	96.00	145.91	60.50	31.02	127.47	100.12	120.70	129.74	96.08	50.42	104.84	67.35	85.89	68.65
20	E4a_E5a	KnownJunction	0	26.97	63.80	51.06	50.98	86.50	61.95	65.05	58.16	34.49	90.77	147.09	112.54	46.75	109.37	85.54	58.19	106.69	11.81	30.68	61.81	39.29	55.42	18.52
21	E4a_E6a	KnownJunction	0	21.71	61.30	27.38	31.53	20.80	18.06	25.04	49.04	47.11	64.31	55.01	26.56	6.33	51.86	26.70	27.43	66.01	45.35	47.06	89.23	8.15	29.82	33.97
22	I4_SR2	SilentIntronRegion	0	2.76	2.32	4.17	1.65	6.10	1.49	4.96	1.26	3.30	3.90	2.20	13.86	5.66	4.95	3.85	2.42	6.45	1.35	0.00	3.12	0.36	4.75	0.00
23	E5_Aa	NovelBoundary	0	13.78	0.00	5.85	7.26	0.00	0.00	6.67	1.81	4.14	2.47	4.42	12.60	6.82	2.47	4.45	3.93	4.39	0.00	0.00	2.94	0.00	10.96	0.00
24	ER5a	ExonRegion	0	39.05	58.21	42.83	43.69	51.50	48.94	54.17	50.66	34.48	88.14	144.84	100.29	48.32	130.29	86.85	96.64	111.44	9.98	44.48	60.43	31.52	90.91	42.06
25	E5_Da	NovelBoundary	0	3.70	0.00	2.72	11.85	11.54	0.00	3.80	0.00	2.98	0.00	17.85	6.30	24.84	12.48	4.45	7.26	9.54	2.57	0.00	3.26	0.00	2.69	0.00
26	E5a_E6a	KnownJunction	0	55.34	74.66	43.38	55.44	42.53	74.50	41.82	63.66	34.81	90.50	155.36	103.08	52.43	151.16	101.00	88.44	118.37	19.69	64.94	75.23	35.09	92.71	26.89
27	I5	Intron	0	11.15	2.89	6.44	4.03	10.31	3.57	7.68	6.47	3.95	6.58	16.53	27.18	12.54	10.16	11.28	10.12	17.40	2.16	2.07	5.35	1.43	10.98	3.69
28	I5_AR1	ActiveIntronRegion	0	3.49	2.52	0.75	1.95	5.52	1.76	2.00	1.77	0.25	0.70	6.64	16.05	5.22	7.54	5.42	3.68	4.99	0.38	0.00	1.75	0.61	5.44	2.83
29	I5_SR1	SilentIntronRegion	1	12.65	2.42	10.49	4.38	8.87	5.23	8.33	6.62	6.53	11.05	20.22	27.70	11.17	9.41	11.44	11.28	22.26	2.49	2.21	5.85	1.96	14.85	5.53
30	I5_AR2	ActiveIntronRegion	0	10.23	0.00	8.58	7.50	7.58	1.83	19.64	12.10	7.41	8.60	16.11	33.91	10.94	10.56	12.09	11.89	32.46	7.39	0.00	4.26	0.00	19.10	0.00
31	I5_SR2	SilentIntronRegion	1	10.58	0.00	8.58	7.04	9.37	1.22	14.12	10.08	7.41	8.03	19.01	33.91	10.94	11.64	16.44	13.87	34.66	7.39	0.00	5.67	0.00	21.53	0.00
32	I5_AR3	ActiveIntronRegion	0	17.03	4.06	6.48	5.61	17.45	3.13	12.35	11.03	4.00	6.24	21.53	37.89	22.21	13.99	17.10	15.09	22.81	3.38	4.08	8.39	1.57	10.91	2.09
33	E6_Aa	NovelBoundary	0	24.08	2.50	4.23	0.00	8.06	2.67	16.12	17.62	4.28	4.92	19.69	36.61	12.34	24.07	4.45	15.30	27.02	7.75	4.42	8.95	8.59	18.37	0.00
34	ER6a	ExonRegion	0	71.70	94.06	81.10	86.47	113.00	85.60	106.74	108.50	75.27	157.09	230.49	173.18	92.90	177.75	139.38	155.98	192.62	81.23	89.99	127.60	42.65	132.81	73.46
35	E6a_E7a	KnownJunction	0	73.72	88.01	118.00	86.40	110.61	134.98	91.51	106.01	86.11	150.70	205.58	206.92	112.98	178.12	129.55	142.61	149.51	76.94	104.85	144.39	26.87	183.27	75.20
36	I6_AR2	ActiveIntronRegion	0	1.29	1.65	13.70	6.20	6.79	1.48	5.88	2.78	1.58	3.57	4.87	1.86	0.00	3.19	1.98	3.48	4.81	3.03	0.52	3.30	0.36	1.28	0.95
37	ER7a	ExonRegion	0	71.17	83.50	109.13	92.22	99.16	109.14	112.42	131.10	75.48	175.26	253.23	197.14	123.74	164.27	204.35	131.22	169.75	61.95	69.60	156.05	27.27	181.67	79.11
38	E7a_E8a	KnownJunction	0	70.53	104.46	116.58	91.40	96.69	102.50	158.63	130.12	107.12	154.70	237.38	274.14	169.47	146.86	255.64	93.22	173.07	48.75	63.06	170.79	25.70	191.11	69.91
39	E8_Aa	NovelBoundary	0	20.45	6.71	12.83	8.76	0.00	2.90	8.04	1.89	6.74	7.06	5.11	12.60	25.00	0.00	5.32	3.59	13.84	4.19	0.00	0.00	0.00	3.06	0.00
40	ER8a	ExonRegion	1	67.81	82.44	101.40	95.90	138.64	80.43	121.64	106.80	72.95	150.15	111.39	238.31	174.80	109.93	135.68	54.74	88.01	40.50	48.50	130.87	11.19	129.90	47.66
41	E8_Da	KnownBoundary	1	64.38	90.58	54.91	81.41	78.95	33.45	55.60	67.77	61.26	103.02	48.06	173.76	100.48	71.81	67.62	49.56	34.69	65.29	94.78	101.50	25.76	74.70	37.73
42	ER8b	ExonRegion	0	56.31	73.84	44.26	40.67	62.67	51.90	67.33	45.37	34.66	74.13	45.20	79.87	57.51	57.49	56.38	58.07	54.53	62.85	61.12	85.18	30.47	33.75	55.63
43	E8_Db	KnownBoundary	0	46.23	117.15	28.56	22.21	109.00	48.32	88.24	41.90	29.14	44.21	44.12	49.37	20.45	53.15	43.02	60.67	38.15	24.13	28.61	66.79	25.39	26.02	7.94
44	ER8c	ExonRegion	0	15.89	36.13	17.73	19.95	30.82	24.50	31.02	22.01	13.62	29.81	13.81	23.22	12.43	15.79	13.63	11.39	11.21	8.75	13.09	21.87	3.77	15.93	8.65
45	IG5_SR2	SilentIntergenicRegion	0	2.70	9.03	4.61	9.78	20.95	13.94	15.80	16.90	11.08	17.51	4.27	9.45	4.92	4.40	4.59	5.67	6.18	8.04	7.07	7.79	3.73	6.61	4.68
46	IG5_AR2	ActiveIntergenicRegion	0	6.42	8.21	3.44	10.16	14.06	8.91	13.37	19.38	11.88	16.39	4.03	11.52	6.83	6.15	6.89	7.47	8.49	4.32	5.84	7.48	2.58	9.98	4.99