Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 HMGCS1 Gene 0 12.24 62.82 31.15 21.39 59.05 61.58 76.16 102.85 65.74 105.84 517.94 105.00 270.57 251.32 195.09 336.59 388.06 436.01 83.22 284.23 183.58 157.85 104.20 2 325110 Transcript 1 1.63 21.57 11.67 4.87 7.34 18.83 17.74 30.91 23.24 28.05 197.33 9.23 64.84 130.73 62.66 179.22 281.31 140.06 23.97 195.05 132.00 64.13 81.63 3 433297 Transcript 1 13.93 66.70 8.22 7.46 171.65 150.37 248.42 105.56 66.03 90.71 374.41 10.95 41.56 225.09 182.21 608.39 456.47 757.68 30.97 405.49 207.57 143.29 141.53 4 ER1a ExonRegion 1 13.25 56.85 14.22 11.89 66.04 130.56 110.37 45.32 35.77 41.60 183.39 2.29 19.78 158.46 134.30 288.77 256.90 294.48 57.68 286.69 124.83 105.67 128.62 5 E1a_E2a KnownJunction 0 3.41 31.84 11.32 3.60 3.99 35.49 27.51 39.23 20.86 33.26 199.89 11.70 59.25 218.02 99.76 325.13 409.63 98.66 12.80 291.59 104.65 104.59 142.47 6 E1a_E3a KnownJunction 1 13.93 66.70 8.22 7.46 171.65 150.37 248.42 105.56 66.03 90.71 374.41 10.95 41.56 225.09 182.21 608.39 456.47 757.68 30.97 405.49 207.57 143.29 141.53 7 I1_AR1 ActiveIntronRegion 0 0.00 2.04 1.75 0.86 1.67 1.38 3.08 2.05 2.43 0.52 13.71 0.00 1.94 5.22 7.46 11.27 25.97 21.89 9.76 13.59 37.08 2.71 10.94 8 I1_SR2 SilentIntronRegion 0 1.76 2.24 5.86 0.95 0.55 0.32 2.63 1.36 4.06 4.22 5.89 1.89 1.14 2.62 11.54 14.01 28.86 27.05 14.09 21.62 37.80 5.26 15.35 9 I1_AR2 ActiveIntronRegion 0 1.83 3.61 8.21 1.63 2.09 0.00 5.07 5.08 4.09 5.22 17.43 2.64 10.47 3.60 11.28 20.98 28.50 29.58 12.46 24.46 37.83 5.90 19.50 10 ER2a ExonRegion 1 1.47 20.37 10.99 4.69 7.07 18.90 21.74 28.71 23.74 24.65 195.32 9.69 66.30 87.59 69.19 161.96 215.23 177.67 23.81 162.13 129.20 45.48 73.32 11 E2a_E3a KnownJunction 1 0.00 12.50 12.68 6.33 10.95 2.10 3.97 24.81 25.12 26.24 196.79 6.30 68.99 86.59 19.04 50.59 219.07 143.84 35.30 131.41 162.17 42.31 29.11 12 E3_Aa NovelBoundary 0 17.04 0.00 3.40 2.96 0.00 0.00 7.91 2.22 0.00 3.60 15.95 13.20 54.87 2.47 10.63 19.05 35.53 19.44 4.05 23.20 24.90 26.70 11.61 13 ER3a ExonRegion 0 11.99 105.64 57.01 32.63 95.37 126.78 140.23 218.96 142.36 233.34 1367.56 250.86 619.05 638.51 423.86 815.61 984.88 1213.24 192.20 756.80 566.69 357.40 281.90 14 E3_Da NovelBoundary 1 26.38 22.17 11.92 21.04 27.84 35.83 24.55 77.42 46.93 73.44 515.45 57.92 355.50 84.41 54.14 425.36 181.58 448.94 92.61 128.86 184.41 258.96 189.59 15 E3a_E4a KnownJunction 0 14.52 105.77 47.63 34.53 134.13 92.62 98.04 189.35 141.17 267.01 1074.75 305.35 424.97 679.91 449.10 756.13 897.71 1542.07 251.30 677.01 579.10 247.57 225.19 16 E3a_E5a NovelJunction 0 0.00 0.00 13.93 1.47 4.33 0.00 0.00 2.26 18.75 2.87 65.28 12.45 12.99 2.12 0.00 31.96 8.60 58.28 14.02 23.20 16.56 3.00 16.65 17 I3 Intron 0 4.62 23.29 4.23 5.82 26.27 13.75 14.80 35.47 21.10 27.50 140.49 83.92 233.89 70.68 55.06 95.65 80.13 45.28 17.37 51.64 44.46 108.83 31.24 18 I3_AR1 ActiveIntronRegion 0 4.64 23.42 4.26 5.85 26.41 13.82 14.88 35.66 21.21 27.65 141.22 84.35 235.09 71.05 55.35 96.15 80.55 45.52 17.47 51.92 44.68 109.38 31.40 19 E4_Aa NovelBoundary 0 15.78 55.58 5.62 15.22 31.15 17.38 25.08 55.16 25.03 45.77 267.70 110.44 198.36 74.46 74.29 93.99 133.24 49.54 4.05 62.64 125.59 114.57 31.93 20 ER4a ExonRegion 0 18.54 132.60 55.06 41.86 121.43 111.34 130.90 201.83 157.12 246.14 1336.81 344.60 638.44 757.01 499.61 938.41 1072.40 1520.26 205.96 806.26 615.17 411.07 269.50 21 E4_Da NovelBoundary 0 7.26 36.77 5.56 9.79 52.80 5.68 20.98 58.33 23.61 42.15 301.13 55.67 143.82 91.82 55.88 93.31 142.87 84.81 17.88 88.84 124.85 121.06 31.67 22 E4a_E5a KnownJunction 0 23.78 151.62 32.05 28.60 148.64 113.97 201.78 171.48 130.50 221.26 1012.31 219.22 515.39 705.58 481.12 777.49 960.92 1191.91 215.44 785.29 449.55 283.51 200.77 23 I4 Intron 0 5.14 16.04 6.10 8.63 17.46 7.52 17.08 33.62 20.67 32.68 107.38 32.82 152.08 47.02 49.32 58.65 61.13 44.43 14.02 62.00 20.07 101.51 24.07 24 I4_AR2 ActiveIntronRegion 0 6.15 19.18 7.29 10.32 20.88 8.99 20.42 40.20 24.72 39.08 128.39 39.24 181.21 54.96 55.63 70.13 73.05 53.11 16.74 74.12 24.00 121.37 28.78 25 E5_Aa NovelBoundary 0 9.04 31.90 7.78 16.88 41.94 13.86 42.75 58.61 29.60 42.63 173.78 49.52 202.58 70.99 70.46 96.13 114.63 66.95 4.80 88.33 63.07 153.08 41.91 26 ER5a ExonRegion 0 32.68 191.48 59.99 55.06 159.51 117.17 195.63 239.08 173.11 277.08 1343.32 242.03 735.85 682.27 466.87 826.22 1004.69 852.65 200.68 693.82 406.60 452.09 209.21 27 E5a_E6a KnownJunction 0 23.78 245.61 40.65 61.33 152.97 121.46 183.45 257.45 200.55 288.20 1426.05 168.05 811.80 617.81 434.51 612.49 989.53 661.39 177.61 699.83 293.01 341.93 154.59 28 I5 Intron 0 1.92 5.67 6.75 1.11 8.27 2.00 11.55 12.48 6.69 12.84 47.53 19.70 81.80 11.27 15.76 28.98 26.99 15.23 7.14 29.13 11.48 47.58 13.52 29 I5_AR1 ActiveIntronRegion 0 2.02 5.91 6.89 1.16 8.53 2.09 11.83 13.04 6.92 13.39 48.36 20.01 83.16 11.54 16.31 30.02 27.69 15.81 7.47 29.45 11.81 48.53 13.93 30 I5_SR1 SilentIntronRegion 0 0.00 0.73 4.19 0.00 2.97 0.20 6.25 1.06 1.99 1.59 32.81 14.43 58.10 6.23 4.67 8.34 13.57 3.49 0.35 24.00 5.02 30.27 5.30 31 E6_Aa NovelBoundary 1 12.74 12.83 8.43 5.46 8.66 0.00 7.38 10.76 11.31 22.56 29.48 17.11 138.30 12.07 9.77 3.42 34.13 16.33 4.61 27.23 5.25 34.84 20.06 32 ER6a ExonRegion 0 31.07 197.29 73.09 70.19 228.65 168.23 238.65 307.81 182.28 310.92 1392.36 284.47 1013.19 595.17 470.96 750.01 926.58 664.21 177.82 702.02 248.32 505.54 220.34 33 E6_Da NovelBoundary 0 0.00 9.01 19.04 3.96 10.87 5.45 3.93 8.95 7.61 2.85 32.75 27.01 55.35 0.00 19.90 3.33 25.99 10.78 9.60 41.67 11.80 37.17 12.29 34 E6a_E7a KnownJunction 0 42.16 186.61 84.15 97.66 205.94 124.47 261.58 397.72 225.61 347.73 1715.22 324.56 1305.43 722.47 607.21 962.06 1122.11 733.68 241.70 777.23 233.46 633.40 319.60 35 E7_Aa NovelBoundary 1 2.96 0.00 12.51 5.43 3.31 0.00 7.86 10.27 7.03 11.39 14.42 50.42 47.07 0.00 9.64 24.35 33.38 11.65 17.13 18.02 0.00 27.98 17.41 36 ER7a ExonRegion 0 36.66 146.77 76.28 61.94 117.06 109.72 159.60 276.16 165.61 268.95 1202.34 215.69 555.92 354.03 341.62 542.98 796.15 532.81 129.67 504.91 199.92 307.93 159.52 37 E7_Da NovelBoundary 0 3.63 12.70 10.73 9.42 7.22 5.00 35.73 31.79 10.19 25.04 90.18 23.86 82.14 17.13 27.32 39.22 41.80 19.19 21.84 49.28 20.82 144.63 28.51 38 E7a_E8a KnownJunction 0 42.90 280.54 112.77 86.00 277.84 201.02 275.75 357.88 199.01 308.00 1580.77 339.56 813.10 631.71 674.95 871.40 974.66 848.34 233.79 731.02 357.44 371.14 236.80 39 E8_Aa NovelBoundary 0 7.26 18.88 15.26 3.33 24.79 2.73 10.78 23.45 17.22 18.45 55.65 12.60 80.51 27.31 38.20 34.26 30.11 89.12 17.60 29.47 19.09 44.88 52.41 40 ER8a ExonRegion 0 25.54 171.01 63.97 58.95 94.53 105.62 129.62 202.13 126.72 189.49 619.07 218.74 517.13 323.81 318.51 590.54 471.29 706.84 131.17 327.78 178.97 213.73 166.57 41 E8_Da NovelBoundary 0 0.00 9.47 14.58 2.06 4.33 0.00 16.25 26.74 15.34 10.72 83.13 0.00 61.03 16.54 46.85 31.87 47.31 105.66 47.81 53.75 80.13 53.33 32.10 42 E8a_E9a KnownJunction 0 32.60 149.84 89.71 52.61 194.23 190.12 176.92 235.03 146.29 206.27 1154.13 261.84 514.41 535.82 619.57 706.82 1058.53 683.03 223.63 546.43 394.14 231.83 138.20 43 E9_Aa NovelBoundary 0 0.00 8.16 20.90 16.25 31.75 7.21 19.21 47.19 5.03 46.18 92.34 17.11 38.15 19.01 23.86 27.86 39.27 22.76 21.08 52.99 39.11 125.28 35.77 44 ER9a ExonRegion 0 11.94 73.60 81.44 52.98 129.07 138.32 138.32 173.72 105.28 144.30 550.95 151.87 313.60 283.69 248.29 551.54 438.99 915.35 158.64 336.88 203.30 184.29 150.33 45 E9_Da NovelBoundary 1 0.00 17.63 21.55 10.35 27.67 0.00 20.76 33.15 15.13 27.26 45.70 12.15 150.31 24.37 19.16 18.20 34.97 16.17 8.75 22.63 23.78 61.05 22.62 46 E9a_E10a KnownJunction 0 34.97 117.08 133.47 67.82 254.67 179.61 186.94 239.71 141.81 196.76 1144.24 266.79 717.49 756.38 750.60 1058.78 860.96 1371.40 286.41 684.87 421.38 494.34 348.71 47 E10_Aa NovelBoundary 0 3.78 8.62 16.03 5.73 11.88 5.22 34.58 32.12 5.15 26.51 48.01 13.80 76.94 17.25 49.32 48.02 45.82 24.33 3.67 61.17 30.39 64.72 27.32 48 ER10a ExonRegion 0 15.28 50.05 76.75 28.92 57.22 63.05 76.18 140.85 89.10 147.17 673.64 123.13 271.02 412.99 361.97 514.01 562.44 785.68 166.77 342.59 324.25 182.43 139.11 49 E10_Da NovelBoundary 0 6.67 9.41 24.01 12.45 12.99 4.88 36.74 22.02 15.42 31.35 52.12 38.56 72.88 34.43 42.03 34.44 44.04 46.39 29.84 31.64 24.28 58.17 20.15 50 E10a_E11a KnownJunction 0 49.64 104.98 74.69 30.23 135.23 138.33 118.27 158.63 74.71 128.96 822.79 86.58 317.84 256.64 250.57 763.56 541.65 828.36 274.36 479.19 371.59 288.78 197.79 51 I10 Intron 0 9.95 6.37 15.90 8.13 15.60 3.83 11.41 19.05 8.17 16.06 45.42 11.95 63.08 18.58 35.26 38.28 39.35 23.29 12.75 26.66 23.00 54.58 23.26 52 I10_SR1 SilentIntronRegion 0 9.96 6.38 15.92 8.14 15.63 3.84 11.43 19.08 8.19 16.09 45.50 11.97 63.18 18.61 35.32 38.35 39.41 23.33 12.77 26.71 23.04 54.67 23.29 53 E11_Aa NovelBoundary 0 3.33 15.46 11.44 15.35 27.59 16.52 28.57 30.89 10.27 22.94 47.85 12.60 53.73 17.48 32.88 73.74 31.98 21.22 22.31 23.27 42.69 79.60 26.72 54 ER11a ExonRegion 0 5.27 11.55 4.86 2.13 10.23 10.83 14.82 12.54 5.91 11.21 44.72 12.34 30.13 31.29 36.47 38.01 40.46 38.35 12.35 26.92 22.97 18.65 12.37